BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2418.p (403 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773694.1| GGDEF domain-containing protein [Herbaspiril... 497 e-138 ref|YP_969122.1| diguanylate cyclase [Acidovorax citrulli AAC00-... 430 e-118 ref|ZP_03544680.1| diguanylate cyclase [Comamonas testosteroni K... 429 e-118 ref|YP_001267390.1| diguanylate cyclase [Pseudomonas putida F1] ... 425 e-117 ref|YP_003279121.1| diguanylate cyclase [Comamonas testosteroni ... 425 e-117 >ref|YP_003773694.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ61786.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 329/382 (86%), Positives = 351/382 (91%) Query: 16 MALDPSTLLILTIALAAAASLYLAIEWNSVRERSLLLWSSGFAIITVGSFLALLRSRGYL 75 MALDPSTLLILTIALAAAASLYL +EW+ VRERSLLLWSSGFAIITVGSFLALLRSRGYL Sbjct: 1 MALDPSTLLILTIALAAAASLYLTVEWSVVRERSLLLWSSGFAIITVGSFLALLRSRGYL 60 Query: 76 LVGIWFANGLLIAAHACFLAGVAWFTRTRISRAWWLIALLWLLMLLLPAHAWWSRVMLGL 135 LVGIWFANGLLIAAHACFLAGVA F RTRISRAWWLIALLWLLMLLLP HAWWSRVMLGL Sbjct: 61 LVGIWFANGLLIAAHACFLAGVAGFMRTRISRAWWLIALLWLLMLLLPTHAWWSRVMLGL 120 Query: 136 QSLMIAALTLQASALLRPHGASLSVGAVQLRFVLLIHGLFYVAKAVSALALGAFVDLAAF 195 QSLMIA LTL+AS+LLRPHGASLSVGAVQLR+VLLIHGLFY+AKAVSALALGA VDLAAF Sbjct: 121 QSLMIAVLTLRASSLLRPHGASLSVGAVQLRYVLLIHGLFYLAKAVSALALGAVVDLAAF 180 Query: 196 GGVLIQVSLVEGSMAVMLIALSMTGTERHRREERIEQLAARDPLTALYNRRALDKRAPAL 255 GG LIQ+SLVEGSMAVMLIALSMTGTERHRREERI QLAARDPLT L NRRAL RAPAL Sbjct: 181 GGTLIQISLVEGSMAVMLIALSMTGTERHRREERIGQLAARDPLTGLLNRRALQARAPAL 240 Query: 256 LAQASPATPGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPADALAARLGGDE 315 +AQAS A PGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLP DALAARLGGDE Sbjct: 241 IAQASQAHPGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPDDALAARLGGDE 300 Query: 316 FVILLQDVREEQVAHLGEQLRMAFSHVARKGVATPEAVSLSVGVSLYTKPALALESLMAL 375 F ILL D R+ QVAH+GEQLR AF HV + VATPEAVSLSVGVSL++ AL L LMA Sbjct: 301 FAILLPDGRQAQVAHIGEQLRQAFVHVTQTAVATPEAVSLSVGVSLFSTAALDLAGLMAR 360 Query: 376 ADAALYDAKRAGRDRLIVSPAH 397 ADAALY+AKRAGR++++++P++ Sbjct: 361 ADAALYEAKRAGRNQIVITPSN 382 >ref|YP_969122.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gb|ABM31348.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 432 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 256/380 (67%), Positives = 298/380 (78%), Gaps = 2/380 (0%) Query: 16 MALDPSTLLILTIALAAAASLYLAIEWNSVRERSLLLWSSGFAIITVGSFLALLRSRGYL 75 M LDP TLL++T ALA A++LYLA EW+SVRERSLLLWS+GFA+I VGS LALLR+ G+L Sbjct: 43 MVLDPFTLLVITAALATASTLYLASEWSSVRERSLLLWSAGFAVIAVGSALALLRASGFL 102 Query: 76 LVGIWFANGLLIAAHACFLAGVAWFTRTRISRAW-WLIALLWLLMLLLPAHAWWSRVMLG 134 VGIWF+NGLLI AHA FL GVA F RTR+ RA WL+A +WL ML LP WWS+ MLG Sbjct: 103 FVGIWFSNGLLIVAHALFLGGVAAFRRTRLPRAGRWLLAAVWLAMLWLPEGPWWSKTMLG 162 Query: 135 LQSLMIAALTLQASALLRPHGA-SLSVGAVQLRFVLLIHGLFYVAKAVSALALGAFVDLA 193 +QSL+IAA+TL+A LLRP G +LSVGA QLRFVL HGLFY+AKA SA+AL A + LA Sbjct: 163 VQSLLIAAVTLRAGLLLRPQGGGALSVGAAQLRFVLWAHGLFYLAKAASAVALDASIHLA 222 Query: 194 AFGGVLIQVSLVEGSMAVMLIALSMTGTERHRREERIEQLAARDPLTALYNRRALDKRAP 253 +F GV+IQVSLVEG MA+ML+A+SMTGTERHRREER+ Q+AARDPLTAL NRRAL RAP Sbjct: 223 SFRGVVIQVSLVEGVMAIMLLAMSMTGTERHRREERMAQIAARDPLTALDNRRALYLRAP 282 Query: 254 ALLAQASPATPGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPADALAARLGG 313 ALL QASPA+PGALLL+DIDNFKQVNDLHGH AGD+LL LS L+R LP ALAARLGG Sbjct: 283 ALLRQASPASPGALLLMDIDNFKQVNDLHGHDAGDRLLITLSDLIRSTLPIGALAARLGG 342 Query: 314 DEFVILLQDVREEQVAHLGEQLRMAFSHVARKGVATPEAVSLSVGVSLYTKPALALESLM 373 DEFVILL+D LG +LR AFS A ATPE VSLS+G +L+ +P L + Sbjct: 343 DEFVILLRDASPSAAQALGRELREAFSEQASTMFATPEPVSLSIGATLFDQPDAELSHWL 402 Query: 374 ALADAALYDAKRAGRDRLIV 393 AD ALY +KR GRDR+ V Sbjct: 403 KRADEALYASKRQGRDRMEV 422 >ref|ZP_03544680.1| diguanylate cyclase [Comamonas testosteroni KF-1] gb|EED68966.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 387 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 255/380 (67%), Positives = 302/380 (79%) Query: 16 MALDPSTLLILTIALAAAASLYLAIEWNSVRERSLLLWSSGFAIITVGSFLALLRSRGYL 75 MALDP TLL+LT A+AAA++LYLA EW+SVRERSLLLWS+GFAII VG LALLRSRGY+ Sbjct: 1 MALDPFTLLVLTSAMAAASALYLAAEWSSVRERSLLLWSAGFAIIAVGCVLALLRSRGYV 60 Query: 76 LVGIWFANGLLIAAHACFLAGVAWFTRTRISRAWWLIALLWLLMLLLPAHAWWSRVMLGL 135 L GIWF NG+LIAAH FLAGVA FTR R+ RAWWL+A++WL ML LP WWSR MLG+ Sbjct: 61 LFGIWFPNGMLIAAHWLFLAGVAGFTRVRLPRAWWLLAVIWLAMLFLPEGPWWSRAMLGI 120 Query: 136 QSLMIAALTLQASALLRPHGASLSVGAVQLRFVLLIHGLFYVAKAVSALALGAFVDLAAF 195 QSL+IA +TL+A LLRP G +L+VGA QLRFVLL HGLFY+AKA S + L FV+LA F Sbjct: 121 QSLLIAIITLRAGLLLRPQGGALNVGAAQLRFVLLAHGLFYLAKAASPVVLDTFVNLAGF 180 Query: 196 GGVLIQVSLVEGSMAVMLIALSMTGTERHRREERIEQLAARDPLTALYNRRALDKRAPAL 255 G +I VSLVEG+MA+ML+A+SM GTERHRREERI Q+AARDPLTAL NRRAL RAP L Sbjct: 181 RGTVILVSLVEGAMAIMLLAMSMIGTERHRREERIAQIAARDPLTALDNRRALYLRAPQL 240 Query: 256 LAQASPATPGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPADALAARLGGDE 315 L QASPA+PGALLLIDID+FKQVNDLHGH AGD+LL +L+ L+R LP +LAARLGGDE Sbjct: 241 LKQASPASPGALLLIDIDHFKQVNDLHGHDAGDRLLVSLADLIRGALPHGSLAARLGGDE 300 Query: 316 FVILLQDVREEQVAHLGEQLRMAFSHVARKGVATPEAVSLSVGVSLYTKPALALESLMAL 375 FVILL+ + LG+ LR AF+ AR ATPE VSLS+G SL+ +P + L + Sbjct: 301 FVILLRGISGAAAQALGQDLREAFAQQARTMFATPEPVSLSIGASLFDQPGMELSHWLKR 360 Query: 376 ADAALYDAKRAGRDRLIVSP 395 AD ALY +KR GRDR+ ++P Sbjct: 361 ADDALYASKRKGRDRMELTP 380 >ref|YP_001267390.1| diguanylate cyclase [Pseudomonas putida F1] gb|ABQ78206.1| diguanylate cyclase [Pseudomonas putida F1] Length = 419 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 247/383 (64%), Positives = 293/383 (76%) Query: 9 SRATQHLMALDPSTLLILTIALAAAASLYLAIEWNSVRERSLLLWSSGFAIITVGSFLAL 68 +R MALDP T+L +T+ALAAAA+LYLAIEW SVRE SLL WS+GFA ITVGS LAL Sbjct: 25 TRQANAYMALDPPTMLTITVALAAAAALYLAIEWRSVREPSLLYWSAGFATITVGSTLAL 84 Query: 69 LRSRGYLLVGIWFANGLLIAAHACFLAGVAWFTRTRISRAWWLIALLWLLMLLLPAHAWW 128 LR G L +GIWFANGLL+ AH FL GV FT+ R+SRAW +I L+W +LLLP W Sbjct: 85 LRGIGLLFIGIWFANGLLVVAHVFFLIGVLRFTQERLSRAWLMIVLVWFALLLLPVGPQW 144 Query: 129 SRVMLGLQSLMIAALTLQASALLRPHGASLSVGAVQLRFVLLIHGLFYVAKAVSALALGA 188 S+VML + SL++A+LTL+AS LLRPHG SLSVGAVQLR+VLLIHGLFYVAKA A+ G Sbjct: 145 SKVMLMVNSLLVASLTLKASFLLRPHGKSLSVGAVQLRYVLLIHGLFYVAKAAIAITPGT 204 Query: 189 FVDLAAFGGVLIQVSLVEGSMAVMLIALSMTGTERHRREERIEQLAARDPLTALYNRRAL 248 +DLA FGG++IQVSLVEG+MA+MLIALSMTGT R+RREERI +LAARDPLTALYNRRAL Sbjct: 205 LIDLATFGGLIIQVSLVEGAMAIMLIALSMTGTVRYRREERIARLAARDPLTALYNRRAL 264 Query: 249 DKRAPALLAQASPATPGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPADALA 308 + RA SPA PGALLLIDIDNFK VNDLHGH AGD+LL ALS ++R LP +LA Sbjct: 265 EVRAGHFFKDVSPAQPGALLLIDIDNFKLVNDLHGHIAGDRLLIALSEMIRTALPERSLA 324 Query: 309 ARLGGDEFVILLQDVREEQVAHLGEQLRMAFSHVARKGVATPEAVSLSVGVSLYTKPALA 368 ARLGGDEFVILL E+V LG LR F A K V TP+AV+LS+G +++ +P + Sbjct: 325 ARLGGDEFVILLSGASSERVMELGSGLREQFQQYADKTVPTPQAVTLSIGANVFDQPPAS 384 Query: 369 LESLMALADAALYDAKRAGRDRL 391 L +L+ D ALY +KR GRD + Sbjct: 385 LAALIEQGDVALYQSKRGGRDSI 407 >ref|YP_003279121.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gb|ACY33825.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 387 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 258/380 (67%), Positives = 302/380 (79%) Query: 16 MALDPSTLLILTIALAAAASLYLAIEWNSVRERSLLLWSSGFAIITVGSFLALLRSRGYL 75 M LDP TLL+L+ A+AAA++LYLA EW+SVRERSL LWS+GFAII VGS LALLRS GY+ Sbjct: 1 MVLDPFTLLVLSAAMAAASALYLAAEWSSVRERSLRLWSAGFAIIAVGSVLALLRSSGYV 60 Query: 76 LVGIWFANGLLIAAHACFLAGVAWFTRTRISRAWWLIALLWLLMLLLPAHAWWSRVMLGL 135 L GIWF NGLLIAAH FLAGVA FTRTR+ R WWL+A++WL ML LP WWS+ MLG+ Sbjct: 61 LFGIWFPNGLLIAAHWLFLAGVAGFTRTRLPRTWWLLAVVWLAMLFLPDGPWWSKTMLGI 120 Query: 136 QSLMIAALTLQASALLRPHGASLSVGAVQLRFVLLIHGLFYVAKAVSALALGAFVDLAAF 195 QSLMIA +TL+A LLRPHGA+LSVGA QLRFVLL HGLFY+AKA S +A AFV+LA+F Sbjct: 121 QSLMIAVITLRAGLLLRPHGAALSVGAAQLRFVLLAHGLFYLAKAASTVAPDAFVNLASF 180 Query: 196 GGVLIQVSLVEGSMAVMLIALSMTGTERHRREERIEQLAARDPLTALYNRRALDKRAPAL 255 G +I VSLVEG MA+ML+A+SMTGTERHRREERI Q+AARDPLTAL NRRAL RAP L Sbjct: 181 RGAVILVSLVEGVMAIMLLAMSMTGTERHRREERIAQIAARDPLTALDNRRALYLRAPEL 240 Query: 256 LAQASPATPGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPADALAARLGGDE 315 L QASPA+PGALLLIDID+FKQVNDLHGH AGD+LL LS L+R +LP A AARLGGDE Sbjct: 241 LRQASPASPGALLLIDIDHFKQVNDLHGHDAGDRLLVTLSDLIRGLLPHGAQAARLGGDE 300 Query: 316 FVILLQDVREEQVAHLGEQLRMAFSHVARKGVATPEAVSLSVGVSLYTKPALALESLMAL 375 FVILL+ V LG+ LR +F+ AR ATPE VSLS+G +L+ +P L + Sbjct: 301 FVILLRSVSGAVAQELGQNLRESFAQQARAMFATPEPVSLSIGATLFDQPETELSHWLKR 360 Query: 376 ADAALYDAKRAGRDRLIVSP 395 AD ALY +KR GRDR+ ++P Sbjct: 361 ADEALYASKRKGRDRMELAP 380