BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2413.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777506.1| phenylacetic acid degradation protein [Herba... 268 4e-70 gb|EGP44974.1| phenylacetate-CoA oxygenase, PaaJ subunit [Achrom... 209 2e-52 ref|ZP_06686622.1| ring-hydroxylation complex protein 3 [Achromo... 208 5e-52 ref|YP_004681514.1| phenylacetic acid degradation protein PaaD [... 207 9e-52 gb|EFV83485.1| phenylacetic acid degradation protein [Achromobac... 207 1e-51 >ref|YP_003777506.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65598.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] Length = 181 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 132/169 (78%), Positives = 147/169 (86%) Query: 66 EQLQEQIWSWLHLVPDPEIPVISVVDLGIVRAVEVSDADAEAARCTVVITPTYSGCPAMG 125 + L+ +IW WL VPDPEIPV+SVVDLGIVR VE+ A A ARCTVVITPTYSGCPAMG Sbjct: 13 DALKARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDARCTVVITPTYSGCPAMG 72 Query: 126 VIAQDISAALRQHGLAEVAIRTQLAPAWNTDWMSEKGRRNLQQYGIAPPAQQVVDIRGIS 185 VIA+DI+ L++ GLA+VAIR QLAPAW+TDWMSEKGR NL+QYGIAPPAQQV+DIRGI Sbjct: 73 VIAEDITTVLQEKGLAQVAIRIQLAPAWSTDWMSEKGRHNLRQYGIAPPAQQVIDIRGIQ 132 Query: 186 LRRQAAPQVQCPHCGSMQTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 234 L+ AA QV CPHCGS +TVCVSQFGSTSCKALYQCKDCREPFDYFKAH Sbjct: 133 LKHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 >gb|EGP44974.1| phenylacetate-CoA oxygenase, PaaJ subunit [Achromobacter xylosoxidans AXX-A] Length = 168 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 107/165 (64%), Positives = 123/165 (74%), Gaps = 6/165 (3%) Query: 70 EQIWSWLHLVPDPEIPVISVVDLGIVRAVEVSDADAEAARCTVVITPTYSGCPAMGVIAQ 129 EQ+++WL VPDPEIPV+SVVDLG+VR V D DA C VVITPTYSGCPAM I + Sbjct: 10 EQVYAWLQEVPDPEIPVLSVVDLGVVRDV-AWDGDA----CVVVITPTYSGCPAMREITE 64 Query: 130 DISAALRQHGLAEVAIRTQLAPAWNTDWMSEKGRRNLQQYGIAPPAQQVVDIRGISLRRQ 189 DI L +HG+ EV + T+L+PAW TDWMSEKGR L+ YGIA PAQQ +DI GIS RR Sbjct: 65 DIRQVLARHGVGEVRVETRLSPAWTTDWMSEKGRAALKDYGIAAPAQQAIDISGIS-RRN 123 Query: 190 AAPQVQCPHCGSMQTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 234 A P ++CP CGS T VS FGSTSCKALY+C CREPFDYFK H Sbjct: 124 AGPPIECPRCGSRDTRLVSNFGSTSCKALYRCVSCREPFDYFKTH 168 >ref|ZP_06686622.1| ring-hydroxylation complex protein 3 [Achromobacter piechaudii ATCC 43553] gb|EFF76512.1| ring-hydroxylation complex protein 3 [Achromobacter piechaudii ATCC 43553] Length = 169 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 106/165 (64%), Positives = 123/165 (74%), Gaps = 6/165 (3%) Query: 70 EQIWSWLHLVPDPEIPVISVVDLGIVRAVEVSDADAEAARCTVVITPTYSGCPAMGVIAQ 129 +Q+++WLH VPDPEIPV+SVVDLG+VR D E C VVITPTYSGCPAM I Q Sbjct: 11 DQVYAWLHEVPDPEIPVLSVVDLGVVR-----DVTWEGDTCVVVITPTYSGCPAMREITQ 65 Query: 130 DISAALRQHGLAEVAIRTQLAPAWNTDWMSEKGRRNLQQYGIAPPAQQVVDIRGISLRRQ 189 DI L +HG+A+V + T+LAPAW TDWMSEKGR L+ YGIA PA++ +DI GIS RR Sbjct: 66 DIQQTLARHGVADVRVDTRLAPAWTTDWMSEKGREALKGYGIAAPAERAIDISGIS-RRA 124 Query: 190 AAPQVQCPHCGSMQTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 234 AAP + CP CGS T VS FGSTSCKALY+C CREPFDYFK H Sbjct: 125 AAPAIACPRCGSSDTRMVSNFGSTSCKALYRCVSCREPFDYFKTH 169 >ref|YP_004681514.1| phenylacetic acid degradation protein PaaD [Cupriavidus necator N-1] gb|AEI80282.1| phenylacetic acid degradation protein PaaD [Cupriavidus necator N-1] Length = 171 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 108/164 (65%), Positives = 123/164 (75%), Gaps = 5/164 (3%) Query: 71 QIWSWLHLVPDPEIPVISVVDLGIVRAVEVSDADAEAARCTVVITPTYSGCPAMGVIAQD 130 Q+W+WL VPDPEIPVISVVDLGIVR V D DA C V ITPTYSGCPAM VI ++ Sbjct: 13 QVWTWLDTVPDPEIPVISVVDLGIVRDVAWED-DA----CIVTITPTYSGCPAMTVIREE 67 Query: 131 ISAALRQHGLAEVAIRTQLAPAWNTDWMSEKGRRNLQQYGIAPPAQQVVDIRGISLRRQA 190 I L G+A V +RTQLAPAW TDWM+ +G+ +L YGIAPPAQQV+DI GIS + Sbjct: 68 IERTLAAQGIASVRVRTQLAPAWTTDWMTPRGKASLGGYGIAPPAQQVIDISGISRKVAP 127 Query: 191 APQVQCPHCGSMQTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 234 A V CPHCGS T VSQFGST+CKALY+C DC+EPFDYFKAH Sbjct: 128 ALVVACPHCGSRHTRLVSQFGSTACKALYRCGDCKEPFDYFKAH 171 >gb|EFV83485.1| phenylacetic acid degradation protein [Achromobacter xylosoxidans C54] Length = 169 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 106/165 (64%), Positives = 122/165 (73%), Gaps = 6/165 (3%) Query: 70 EQIWSWLHLVPDPEIPVISVVDLGIVRAVEVSDADAEAARCTVVITPTYSGCPAMGVIAQ 129 EQ+++WL VPDPEIPV+SVVDLG+VR V D DA C VVITPTYSGCPAM I + Sbjct: 11 EQVYAWLQEVPDPEIPVLSVVDLGVVRDVS-WDGDA----CVVVITPTYSGCPAMREITE 65 Query: 130 DISAALRQHGLAEVAIRTQLAPAWNTDWMSEKGRRNLQQYGIAPPAQQVVDIRGISLRRQ 189 DI L +HG+ EV + T+L+PAW TDWMSEKGR L+ YGIA PAQQ +DI GIS R Sbjct: 66 DIRQVLARHGIGEVRVETRLSPAWTTDWMSEKGRAALKDYGIAAPAQQAIDISGISW-RS 124 Query: 190 AAPQVQCPHCGSMQTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 234 A P ++CP CGS T VS FGSTSCKALY+C CREPFDYFK H Sbjct: 125 AGPAIECPRCGSRDTRLVSNFGSTSCKALYRCVSCREPFDYFKTH 169