BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2412.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777505.1| phenylacetic acid degradation protein [Herba... 432 e-119 ref|YP_004681515.1| phenylacetic acid degradation protein PaaC [... 362 4e-98 ref|YP_002008256.1| subunit of multicomponent oxygenase, phenyla... 359 2e-97 ref|YP_840880.1| phenylacetic acid degradation protein C [Ralsto... 356 2e-96 ref|YP_297939.1| phenylacetate-CoA oxygenase subunit PaaI [Ralst... 355 3e-96 >ref|YP_003777505.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65597.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] Length = 250 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 216/250 (86%), Positives = 230/250 (92%) Query: 1 MTHKTDYVRRLGDNVLVLSQRLSEWCGKGPALEEDMALINVSLDLIGQARLWLAYAAELE 60 MT KTDYVRRLGDNVLVLSQRL+EWCGKGPALEEDMALINVSLDLIGQARLWL+YAAELE Sbjct: 1 MTQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELE 60 Query: 61 GAGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCESSDARI 120 G GRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLC+SSDARI Sbjct: 61 GQGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARI 120 Query: 121 AEIAQKCFKEVTYHVRRSTDLMIRLGDGSEESHRRMQEAIDALWMYTGELFTTDADDQAM 180 AEIAQKCFKEVTYHVRRSTDLMIRLGDG+E+SHRRMQ AIDALWMYTGELF DA DQAM Sbjct: 121 AEIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAM 180 Query: 181 QQEGVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGYLLAEMQF 240 Q++GVA A ++ +W QHV ++L EATL+ PPA WMQSGGK G+HTEHLGYLLAEMQF Sbjct: 181 QEQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQF 240 Query: 241 LQRTYPGATW 250 LQR YPGA W Sbjct: 241 LQRAYPGAQW 250 >ref|YP_004681515.1| phenylacetic acid degradation protein PaaC [Cupriavidus necator N-1] gb|AEI80283.1| phenylacetic acid degradation protein PaaC [Cupriavidus necator N-1] Length = 251 Score = 362 bits (928), Expect = 4e-98, Method: Composition-based stats. Identities = 181/248 (72%), Positives = 206/248 (83%), Gaps = 1/248 (0%) Query: 3 HKTDYVRRLGDNVLVLSQRLSEWCGKGPALEEDMALINVSLDLIGQARLWLAYAAELEGA 62 HK +Y+ RLGD+ LVL QRLSEWCG+GPALEED+AL NV+LDLIGQ RLWL YAAE+EGA Sbjct: 5 HKLEYLLRLGDSTLVLGQRLSEWCGRGPALEEDIALTNVALDLIGQTRLWLGYAAEVEGA 64 Query: 63 GRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCESSDARIAE 122 GR DQLA+LRDAHQF NLLL E PNGSYADTLARQFLFD WHYFLL+GL S+DARIAE Sbjct: 65 GRTADQLAYLRDAHQFRNLLLAEQPNGSYADTLARQFLFDTWHYFLLDGLQRSTDARIAE 124 Query: 123 IAQKCFKEVTYHVRRSTDLMIRLGDGSEESHRRMQEAIDALWMYTGELFTTDADDQAMQQ 182 IA K KEVTYHVRRS DL++RLGDGSEESHRRMQ+A D LWM++GELF +DA D A+ Q Sbjct: 125 IAAKSLKEVTYHVRRSADLVVRLGDGSEESHRRMQDAFDDLWMFSGELFESDAGDAALVQ 184 Query: 183 EGVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGYLLAEMQFLQ 242 +GV P P ++ W +HV +L EATLQ PA W QSGG+ G+HTEHLGYLLAEMQFLQ Sbjct: 185 DGVVPDPASLAEPWQRHVAAVLEEATLQL-PAGTWSQSGGRHGRHTEHLGYLLAEMQFLQ 243 Query: 243 RTYPGATW 250 R YPGA+W Sbjct: 244 RAYPGASW 251 >ref|YP_002008256.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 3 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72202.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 3 [Cupriavidus taiwanensis LMG 19424] Length = 250 Score = 359 bits (922), Expect = 2e-97, Method: Composition-based stats. Identities = 182/248 (73%), Positives = 202/248 (81%), Gaps = 1/248 (0%) Query: 3 HKTDYVRRLGDNVLVLSQRLSEWCGKGPALEEDMALINVSLDLIGQARLWLAYAAELEGA 62 HK +Y+ RLGD+ LVL QRLSEWCG+GPALEED+AL NV+LDLIGQ RLWL YAAE+EGA Sbjct: 4 HKLEYLLRLGDSTLVLGQRLSEWCGRGPALEEDIALTNVALDLIGQTRLWLGYAAEVEGA 63 Query: 63 GRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCESSDARIAE 122 GR D LAFLRDAHQF NLLLVE PNGSYADTLARQFLFD WHYF LE L S+DARIAE Sbjct: 64 GRTADHLAFLRDAHQFRNLLLVEQPNGSYADTLARQFLFDTWHYFQLEALQRSTDARIAE 123 Query: 123 IAQKCFKEVTYHVRRSTDLMIRLGDGSEESHRRMQEAIDALWMYTGELFTTDADDQAMQQ 182 IA K KEVTYHVRRS DL++RLGDGSEESHRRMQ+A D LWM+TGELF DA + A+ Sbjct: 124 IAAKSLKEVTYHVRRSADLVVRLGDGSEESHRRMQDAFDDLWMFTGELFEADAAETALAN 183 Query: 183 EGVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGYLLAEMQFLQ 242 EGV PAP + W +HV E+L EATL+ PA W QSGG+ G+HTEHLGYLLAEMQFLQ Sbjct: 184 EGVIPAPGTLAEPWQRHVGEVLEEATLRV-PAGQWAQSGGRHGRHTEHLGYLLAEMQFLQ 242 Query: 243 RTYPGATW 250 R YPGA W Sbjct: 243 RAYPGAQW 250 >ref|YP_840880.1| phenylacetic acid degradation protein C [Ralstonia eutropha H16] emb|CAJ96150.1| phenylacetic acid degradation protein C [Ralstonia eutropha H16] Length = 251 Score = 356 bits (913), Expect = 2e-96, Method: Composition-based stats. Identities = 178/248 (71%), Positives = 204/248 (82%), Gaps = 1/248 (0%) Query: 3 HKTDYVRRLGDNVLVLSQRLSEWCGKGPALEEDMALINVSLDLIGQARLWLAYAAELEGA 62 HK +Y+ RLGD LVL QRLSEWCG+GPALEED+AL NV+LDLIGQ RLWL YAAE+EGA Sbjct: 5 HKLEYLLRLGDATLVLGQRLSEWCGRGPALEEDIALTNVALDLIGQTRLWLGYAAEVEGA 64 Query: 63 GRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCESSDARIAE 122 GRN DQ+A+LRDAHQF N LLVE PNGSYADTLARQFLFD WHYFLL+GL S+DARIAE Sbjct: 65 GRNADQMAYLRDAHQFRNPLLVEQPNGSYADTLARQFLFDTWHYFLLDGLQRSTDARIAE 124 Query: 123 IAQKCFKEVTYHVRRSTDLMIRLGDGSEESHRRMQEAIDALWMYTGELFTTDADDQAMQQ 182 IA K KEVTYHVRRS DL++RLGDGSEESHRRMQ+A + LWM++ ELF +DA D A+ Q Sbjct: 125 IAAKSLKEVTYHVRRSADLVVRLGDGSEESHRRMQDAFNDLWMFSDELFESDAGDAALVQ 184 Query: 183 EGVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGYLLAEMQFLQ 242 G+ P P ++ W +HV +L EATLQ PA W QSGG+ G+HTEHLGYLLAEMQFLQ Sbjct: 185 AGLVPDPASLAEPWQRHVAAVLEEATLQL-PAGTWSQSGGRHGRHTEHLGYLLAEMQFLQ 243 Query: 243 RTYPGATW 250 R YPGA+W Sbjct: 244 RAYPGASW 251 >ref|YP_297939.1| phenylacetate-CoA oxygenase subunit PaaI [Ralstonia eutropha JMP134] gb|AAZ63095.1| Phenylacetate-CoA oxygenase, PaaI subunit [Ralstonia eutropha JMP134] Length = 250 Score = 355 bits (912), Expect = 3e-96, Method: Composition-based stats. Identities = 179/248 (72%), Positives = 206/248 (83%), Gaps = 1/248 (0%) Query: 3 HKTDYVRRLGDNVLVLSQRLSEWCGKGPALEEDMALINVSLDLIGQARLWLAYAAELEGA 62 HK +Y++RLGD LVL QRLSEWCG+GPALEED+AL NV+LDL+GQ RLWL YAAE+EG Sbjct: 4 HKFEYLQRLGDTTLVLGQRLSEWCGRGPALEEDIALTNVALDLVGQTRLWLGYAAEVEGV 63 Query: 63 GRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCESSDARIAE 122 GRN DQLA+LRDAHQF NLLLVE PNGSYADTLARQFLFD WHYFLLE L S+DARIAE Sbjct: 64 GRNADQLAYLRDAHQFRNLLLVEQPNGSYADTLARQFLFDTWHYFLLERLQHSTDARIAE 123 Query: 123 IAQKCFKEVTYHVRRSTDLMIRLGDGSEESHRRMQEAIDALWMYTGELFTTDADDQAMQQ 182 IA K KEVTYHVRRS DL++RLGDG+EESHRRMQ+A D LWM+TGELF +DA + A+ Sbjct: 124 IAAKSLKEVTYHVRRSGDLVVRLGDGTEESHRRMQDAFDDLWMFTGELFESDAAEVALVA 183 Query: 183 EGVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGYLLAEMQFLQ 242 +GVA P ++ W +HV E+L EATL+ PA W Q+GG+QG+HTEHLGYLLAEMQFLQ Sbjct: 184 QGVAVDPASLAESWQRHVGEVLEEATLRI-PAGNWSQTGGRQGRHTEHLGYLLAEMQFLQ 242 Query: 243 RTYPGATW 250 R YPGA W Sbjct: 243 RAYPGARW 250