BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2411.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777504.1| phenylacetic acid degradation protein [Herba...   186   1e-45
ref|NP_889967.1| phenylacetate-CoA oxygenase subunit PaaB [Borde...   169   2e-40
ref|YP_785903.1| phenylacetate-CoA oxygenase subunit PaaB [Borde...   169   2e-40
ref|NP_881295.1| phenylacetate-CoA oxygenase subunit PaaB [Borde...   169   2e-40
ref|NP_883950.1| phenylacetate-CoA oxygenase subunit PaaB [Borde...   167   3e-40

>ref|YP_003777504.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae
          SmR1]
 gb|ADJ65596.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae
          SmR1]
          Length = 94

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/94 (98%), Positives = 94/94 (100%)

Query: 1  MSKEWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIV 60
          MSKEWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIV
Sbjct: 1  MSKEWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIV 60

Query: 61 SSSPGDKAPLFEPANSKVYRHPTFFPMPAELKNL 94
          SSSPGDKAPLFEP+NSKVYRHPTFFPMPAELKNL
Sbjct: 61 SSSPGDKAPLFEPSNSKVYRHPTFFPMPAELKNL 94


>ref|NP_889967.1| phenylacetate-CoA oxygenase subunit PaaB [Bordetella
          bronchiseptica RB50]
 emb|CAE33926.1| phenylacetic acid degradation protein [Bordetella bronchiseptica
          RB50]
          Length = 94

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/94 (88%), Positives = 90/94 (95%)

Query: 1  MSKEWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIV 60
          MSK+WPLWEVFIRSQHGLAHKHVGSLHAPD EMAIN+ARDVYTRRNEG+ IWVVRAADIV
Sbjct: 1  MSKDWPLWEVFIRSQHGLAHKHVGSLHAPDAEMAINHARDVYTRRNEGLSIWVVRAADIV 60

Query: 61 SSSPGDKAPLFEPANSKVYRHPTFFPMPAELKNL 94
          +SSPGDK PLFEPANSKVYRHPTFFPMP E+K++
Sbjct: 61 ASSPGDKEPLFEPANSKVYRHPTFFPMPDEIKHM 94


>ref|YP_785903.1| phenylacetate-CoA oxygenase subunit PaaB [Bordetella avium 197N]
 emb|CAJ48990.1| phenylacetic acid degradation protein [Bordetella avium 197N]
          Length = 94

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/94 (87%), Positives = 89/94 (94%)

Query: 1  MSKEWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIV 60
          MSKEWPLWEVFIRSQHGLAHKHVGSLHAPD EMAINNARDVYTRRNEG+ IWVVRA+DI 
Sbjct: 1  MSKEWPLWEVFIRSQHGLAHKHVGSLHAPDAEMAINNARDVYTRRNEGLSIWVVRASDIT 60

Query: 61 SSSPGDKAPLFEPANSKVYRHPTFFPMPAELKNL 94
          +SSPGDK PLFEPAN+KVYRHPTFFPMP E+K++
Sbjct: 61 ASSPGDKEPLFEPANNKVYRHPTFFPMPEEIKHM 94


>ref|NP_881295.1| phenylacetate-CoA oxygenase subunit PaaB [Bordetella pertussis
          Tohama I]
 emb|CAE42959.1| phenylacetic acid degradation protein [Bordetella pertussis
          Tohama I]
 gb|AEE67902.1| phenylacetate-CoA oxygenase subunit PaaB [Bordetella pertussis
          CS]
          Length = 94

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/94 (88%), Positives = 90/94 (95%)

Query: 1  MSKEWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIV 60
          MSK+WPLWEVFIRSQHGLAHKHVGSLHAPD EMAIN+ARDVYTRRNEG+ IWVVRAADIV
Sbjct: 1  MSKDWPLWEVFIRSQHGLAHKHVGSLHAPDTEMAINHARDVYTRRNEGLSIWVVRAADIV 60

Query: 61 SSSPGDKAPLFEPANSKVYRHPTFFPMPAELKNL 94
          +SSPGDK PLFEPANSKVYRHPTFFPMP E+K++
Sbjct: 61 ASSPGDKEPLFEPANSKVYRHPTFFPMPDEIKHM 94


>ref|NP_883950.1| phenylacetate-CoA oxygenase subunit PaaB [Bordetella
          parapertussis 12822]
 emb|CAE36975.1| phenylacetic acid degradation protein [Bordetella parapertussis]
          Length = 94

 Score =  167 bits (424), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/94 (87%), Positives = 90/94 (95%)

Query: 1  MSKEWPLWEVFIRSQHGLAHKHVGSLHAPDGEMAINNARDVYTRRNEGVGIWVVRAADIV 60
          MSK+WPLWEVFIRSQHGLAHKHVGSLHAPD EMAIN+ARDVYTRRNEG+ IWVVRA+DIV
Sbjct: 1  MSKDWPLWEVFIRSQHGLAHKHVGSLHAPDAEMAINHARDVYTRRNEGLSIWVVRASDIV 60

Query: 61 SSSPGDKAPLFEPANSKVYRHPTFFPMPAELKNL 94
          +SSPGDK PLFEPANSKVYRHPTFFPMP E+K++
Sbjct: 61 ASSPGDKEPLFEPANSKVYRHPTFFPMPDEIKHM 94