BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2410.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777503.1| phenylacetic acid degradation protein [Herba... 638 0.0 ref|YP_002008258.1| phenylacetate-CoA oxygenase subunit paaa [Cu... 584 e-165 ref|YP_840882.1| phenylacetate-CoA oxygenase subunit PaaA [Ralst... 582 e-164 ref|YP_004681517.1| phenylacetic acid degradation protein PaaA [... 582 e-164 ref|YP_297937.1| phenylacetate-CoA oxygenase subunit PaaA [Ralst... 577 e-163 >ref|YP_003777503.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65595.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 311/328 (94%), Positives = 320/328 (97%) Query: 1 MYAQLVETGLAKVRSADDMSPEEQAFQARIDAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60 MYAQ+VETGL+KVR DDMSPEE+AFQARI+AGVKIEPKDWMPEAYRKTLVRQISQHAHS Sbjct: 1 MYAQMVETGLSKVRGLDDMSPEERAFQARIEAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAILLAKIQDEAGHGLYLYSAAETLGVSRDALLGDLHSGK 120 EIVGQLPE NWVTRAPTL+RKAIL+AKIQDEAGHGLYLYSAAETLGVSRD LL +LH+G+ Sbjct: 61 EIVGQLPEGNWVTRAPTLQRKAILMAKIQDEAGHGLYLYSAAETLGVSRDDLLDELHAGR 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ 180 AKYSSIFNYP LSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ Sbjct: 121 AKYSSIFNYPALSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ 180 Query: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL 240 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL Sbjct: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL 240 Query: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFGEINWDEFHNVLRGNGPCNRERLAT 300 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFG INWDEFHNVLRGNGPCNRERLAT Sbjct: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFGAINWDEFHNVLRGNGPCNRERLAT 300 Query: 301 RKKAYDDGAWFRDALVAHADKRAARKAA 328 RKKAYDDGAWFRDALVAHADKRA RKAA Sbjct: 301 RKKAYDDGAWFRDALVAHADKRATRKAA 328 >ref|YP_002008258.1| phenylacetate-CoA oxygenase subunit paaa [Cupriavidus taiwanensis LMG 19424] emb|CAQ72204.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 1 [Cupriavidus taiwanensis LMG 19424] Length = 332 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 277/326 (84%), Positives = 305/326 (93%) Query: 1 MYAQLVETGLAKVRSADDMSPEEQAFQARIDAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60 MYAQLVETG ++R+ ++M P+E+AFQAR+D G+KIE KDWMPEAYRKTLVRQISQHAHS Sbjct: 1 MYAQLVETGATRLRAMEEMDPQERAFQARVDDGIKIEAKDWMPEAYRKTLVRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAILLAKIQDEAGHGLYLYSAAETLGVSRDALLGDLHSGK 120 EIVGQLPE NWVTRAPTLERKA+LLAKIQDEAGHGLYLYSAAETLGVSRD +LGDLHSGK Sbjct: 61 EIVGQLPEGNWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVSRDQMLGDLHSGK 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ 180 AKYSSIFNYPTLSWAD+G IGWLVDGSAIINQ+PLCRCSYGPY+RAMVRVCKEESFH RQ Sbjct: 121 AKYSSIFNYPTLSWADIGMIGWLVDGSAIINQVPLCRCSYGPYARAMVRVCKEESFHQRQ 180 Query: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL 240 GYDI+L LC GTPEQKQMAQDALNRWWWPALMMFGPSD +S NSAQSMQWRIKLFSNDEL Sbjct: 181 GYDILLKLCNGTPEQKQMAQDALNRWWWPALMMFGPSDGDSPNSAQSMQWRIKLFSNDEL 240 Query: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFGEINWDEFHNVLRGNGPCNRERLAT 300 RQ+MVDQT+PQ EYLGLT+PDP LKWNEERG YDFGEI+W EF+NV++GNGPCNR+RL T Sbjct: 241 RQKMVDQTVPQAEYLGLTIPDPKLKWNEERGHYDFGEIDWSEFYNVIQGNGPCNRDRLRT 300 Query: 301 RKKAYDDGAWFRDALVAHADKRAARK 326 R KA+DDGAWFRDALVAHADK+A ++ Sbjct: 301 RVKAWDDGAWFRDALVAHADKQAGKQ 326 >ref|YP_840882.1| phenylacetate-CoA oxygenase subunit PaaA [Ralstonia eutropha H16] emb|CAJ96152.1| phenylacetic acid degradation protein A [Ralstonia eutropha H16] Length = 328 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 275/328 (83%), Positives = 306/328 (93%) Query: 1 MYAQLVETGLAKVRSADDMSPEEQAFQARIDAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60 MYAQLVETG ++R+ ++M P+E+ FQAR+DAG+KIE KDWMPEAYRKTLVRQISQHAHS Sbjct: 1 MYAQLVETGATRLRAMEEMEPQEREFQARVDAGIKIEAKDWMPEAYRKTLVRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAILLAKIQDEAGHGLYLYSAAETLGVSRDALLGDLHSGK 120 EIVGQLPE NWVTRAPTLERKA+LLAKIQDEAGHGLYLYSAAETLGVSRD +LGDLH+GK Sbjct: 61 EIVGQLPEGNWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVSRDQMLGDLHTGK 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ 180 AKYSSIFNYPTLSWAD+G IGWLVDGSAIINQ+PLCRCS+GPY+RAMVRVCKEESFH RQ Sbjct: 121 AKYSSIFNYPTLSWADIGMIGWLVDGSAIINQVPLCRCSFGPYARAMVRVCKEESFHQRQ 180 Query: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL 240 GYDI+L+LC GTPEQKQMAQDALNRWWWPALMMFGPSD +S NSAQSMQWRIKLFSNDEL Sbjct: 181 GYDILLSLCNGTPEQKQMAQDALNRWWWPALMMFGPSDGDSPNSAQSMQWRIKLFSNDEL 240 Query: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFGEINWDEFHNVLRGNGPCNRERLAT 300 RQ+MVDQT+PQ EYLGL +PDP+LKWNEERG YDFGEI+W EF+NV++GNGPCNRERL T Sbjct: 241 RQKMVDQTVPQAEYLGLAIPDPELKWNEERGHYDFGEIDWSEFYNVIQGNGPCNRERLRT 300 Query: 301 RKKAYDDGAWFRDALVAHADKRAARKAA 328 R KA+++GAWFRDALV HADK+A R AA Sbjct: 301 RVKAWEEGAWFRDALVTHADKQAQRAAA 328 >ref|YP_004681517.1| phenylacetic acid degradation protein PaaA [Cupriavidus necator N-1] gb|AEI80285.1| phenylacetic acid degradation protein PaaA [Cupriavidus necator N-1] Length = 328 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 274/328 (83%), Positives = 306/328 (93%) Query: 1 MYAQLVETGLAKVRSADDMSPEEQAFQARIDAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60 MYAQLVETG ++R+ ++M P+E+ FQAR+DAG+KIE KDWMPEAYRKTLVRQISQHAHS Sbjct: 1 MYAQLVETGATRLRAMEEMEPQEREFQARVDAGIKIEAKDWMPEAYRKTLVRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAILLAKIQDEAGHGLYLYSAAETLGVSRDALLGDLHSGK 120 EIVGQLPE NWVTRAPTLERKA+LLAKIQDEAGHGLYLYSAAETLGVSRD +LGDLH+GK Sbjct: 61 EIVGQLPEGNWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVSRDQMLGDLHTGK 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ 180 AKYSSIFNYPTLSWAD+G IGWLVDGSAIINQ+PLCRCS+GPY+RAMVRVCKEESFH RQ Sbjct: 121 AKYSSIFNYPTLSWADIGMIGWLVDGSAIINQVPLCRCSFGPYARAMVRVCKEESFHQRQ 180 Query: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL 240 GYDI+L+LC GTPEQKQMAQDALNRWWWPALMMFGPSD +S NSAQSMQWRIKLFSNDEL Sbjct: 181 GYDILLSLCNGTPEQKQMAQDALNRWWWPALMMFGPSDGDSPNSAQSMQWRIKLFSNDEL 240 Query: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFGEINWDEFHNVLRGNGPCNRERLAT 300 RQ+MVDQT+PQ EYLGL +PDP+LKWNEERG YDFGEI+W EF+NV++GNGPCNR+RL T Sbjct: 241 RQKMVDQTVPQAEYLGLVIPDPELKWNEERGHYDFGEIDWSEFYNVIQGNGPCNRDRLRT 300 Query: 301 RKKAYDDGAWFRDALVAHADKRAARKAA 328 R KA+++GAWFRDALV HADK+A R AA Sbjct: 301 RVKAWEEGAWFRDALVTHADKQAQRAAA 328 >ref|YP_297937.1| phenylacetate-CoA oxygenase subunit PaaA [Ralstonia eutropha JMP134] gb|AAZ63093.1| Phenylacetate-CoA oxygenase, PaaG subunit [Ralstonia eutropha JMP134] Length = 327 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 274/322 (85%), Positives = 303/322 (94%) Query: 1 MYAQLVETGLAKVRSADDMSPEEQAFQARIDAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60 MYAQLV+TG ++R+ ++M P+E+ FQAR+DAG+KIE KDWMPEAYRKTL+RQISQHAHS Sbjct: 1 MYAQLVDTGATRLRAMEEMDPQEREFQARVDAGIKIEAKDWMPEAYRKTLIRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAILLAKIQDEAGHGLYLYSAAETLGVSRDALLGDLHSGK 120 EI+GQLPE NWVTRAPTLERKA+LLAKIQDEAGHGLYLYSAAETLG SRD LLGDLHSGK Sbjct: 61 EIIGQLPEGNWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGASRDELLGDLHSGK 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ 180 AKYSSIFNYPTLSWAD+GAIGWLVDGSAIINQ+PLCRCS+GPY+RAMVRVCKEESFH RQ Sbjct: 121 AKYSSIFNYPTLSWADIGAIGWLVDGSAIINQVPLCRCSFGPYARAMVRVCKEESFHQRQ 180 Query: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL 240 GYDI+L LC+GT EQKQMAQDALNRWWWPALMMFGPSDA+S NSAQSM+WRIKLFSNDEL Sbjct: 181 GYDILLKLCQGTAEQKQMAQDALNRWWWPALMMFGPSDADSPNSAQSMKWRIKLFSNDEL 240 Query: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFGEINWDEFHNVLRGNGPCNRERLAT 300 RQ+MVDQT+PQ EYLGLT+PDPDLKWNEERG YDFG INWDEF+NVLRGNGPCNR+RL T Sbjct: 241 RQKMVDQTVPQAEYLGLTIPDPDLKWNEERGHYDFGAINWDEFYNVLRGNGPCNRDRLRT 300 Query: 301 RKKAYDDGAWFRDALVAHADKR 322 R KA+DDGAWFR+ALVA ADK+ Sbjct: 301 RVKAWDDGAWFREALVARADKQ 322