BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2409.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777502.1| carbonic anhydrase/acetyltransferase [Herbas...   164   3e-39
ref|YP_001791436.1| phenylacetic acid degradation protein PaaY [...   129   1e-28
ref|YP_003644673.1| phenylacetic acid degradation protein PaaY [...   123   7e-27
emb|CAC10600.1| putative regulatory protein [Azoarcus evansii]        123   1e-26
gb|AAG28963.1| PaaY [Azoarcus evansii]                                123   1e-26

>ref|YP_003777502.1| carbonic anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65594.1| carbonic anhydrases/acetyltransferases, isoleucine patch
           superfamily protein [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 87/102 (85%), Positives = 93/102 (91%)

Query: 1   MNAVVMDEAVVGAQSIVAACAFVRAGMQIPPRTLVAGLPAKVVRDLTEEEMAWKRAGTET 60
           MNAVVMDEAVVG Q+IVAACAFVRAGMQIPPRTL AGLPAKVVR+LT +EMAWK+AGT T
Sbjct: 99  MNAVVMDEAVVGEQAIVAACAFVRAGMQIPPRTLAAGLPAKVVRELTADEMAWKQAGTRT 158

Query: 61  YHDLAKRSLKSLREVSPLAQIEENRPSLAAPFVEPLIAARRA 102
           Y DL  R L SLREVSPL+QIEENRP+LAAPFVEPLIAARRA
Sbjct: 159 YQDLTVRCLASLREVSPLSQIEENRPALAAPFVEPLIAARRA 200


>ref|YP_001791436.1| phenylacetic acid degradation protein PaaY [Leptothrix cholodnii
           SP-6]
 gb|ACB34671.1| phenylacetic acid degradation protein PaaY [Leptothrix cholodnii
           SP-6]
          Length = 208

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/101 (64%), Positives = 82/101 (81%)

Query: 1   MNAVVMDEAVVGAQSIVAACAFVRAGMQIPPRTLVAGLPAKVVRDLTEEEMAWKRAGTET 60
           MNAV+MDEA VG  +IVAACAFVRAG+++PPR+LVAGLPAKV+R L+++E+AWKR GT  
Sbjct: 99  MNAVIMDEAEVGEATIVAACAFVRAGVKLPPRSLVAGLPAKVIRPLSDDEIAWKREGTAV 158

Query: 61  YHDLAKRSLKSLREVSPLAQIEENRPSLAAPFVEPLIAARR 101
           Y DL +R L SL EV PLA++E +RP + AP V+ LIA RR
Sbjct: 159 YQDLTRRCLASLHEVQPLAEVESDRPRVPAPDVKSLIATRR 199


>ref|YP_003644673.1| phenylacetic acid degradation protein PaaY [Thiomonas intermedia
           K12]
 gb|ADG32343.1| phenylacetic acid degradation protein PaaY [Thiomonas intermedia
           K12]
          Length = 205

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 65/101 (64%), Positives = 78/101 (77%)

Query: 1   MNAVVMDEAVVGAQSIVAACAFVRAGMQIPPRTLVAGLPAKVVRDLTEEEMAWKRAGTET 60
           MNAVVMD+A +G Q+IVAACAFV AGM +P R LVAG+PAK+ R+L+ EE+AWK  GT T
Sbjct: 99  MNAVVMDDAEIGVQAIVAACAFVPAGMVVPARMLVAGMPAKLRRELSPEEIAWKLEGTRT 158

Query: 61  YHDLAKRSLKSLREVSPLAQIEENRPSLAAPFVEPLIAARR 101
           Y DLA+R   SLREV PL  ++  RP+L AP VEPLIA RR
Sbjct: 159 YQDLARRCHASLREVQPLTALDAGRPALRAPQVEPLIALRR 199


>emb|CAC10600.1| putative regulatory protein [Azoarcus evansii]
          Length = 201

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/101 (60%), Positives = 75/101 (74%)

Query: 1   MNAVVMDEAVVGAQSIVAACAFVRAGMQIPPRTLVAGLPAKVVRDLTEEEMAWKRAGTET 60
           MNAVVMD AV+G  SIVAAC+FV+AGM+IPP+ LVAG+PAKVVR LT +EM WK  GT  
Sbjct: 99  MNAVVMDRAVIGESSIVAACSFVKAGMEIPPQVLVAGVPAKVVRTLTRQEMDWKVEGTRC 158

Query: 61  YHDLAKRSLKSLREVSPLAQIEENRPSLAAPFVEPLIAARR 101
           YHDLA RSL +L+   PL + E +RP++  P V PL   +R
Sbjct: 159 YHDLAARSLTTLKPCEPLTEAEADRPAMVLPEVVPLFELKR 199


>gb|AAG28963.1| PaaY [Azoarcus evansii]
          Length = 201

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/101 (60%), Positives = 75/101 (74%)

Query: 1   MNAVVMDEAVVGAQSIVAACAFVRAGMQIPPRTLVAGLPAKVVRDLTEEEMAWKRAGTET 60
           MNAVVMD AV+G  SIVAAC+FV+AGM+IPP+ LVAG+PAKVVR LT +EM WK  GT  
Sbjct: 99  MNAVVMDRAVIGESSIVAACSFVKAGMEIPPQVLVAGVPAKVVRTLTRQEMDWKVEGTRC 158

Query: 61  YHDLAKRSLKSLREVSPLAQIEENRPSLAAPFVEPLIAARR 101
           YHDLA RSL +L+   PL + E +RP++  P V PL   +R
Sbjct: 159 YHDLAARSLTTLKPCEPLTEAEADRPAMVLPEVVPLFELKR 199