BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2408.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777501.1| transcription regulator protein [Herbaspiril... 395 e-108 ref|YP_998675.1| TetR family transcriptional regulator [Verminep... 251 6e-65 ref|YP_001561602.1| TetR family transcriptional regulator [Delft... 245 3e-63 ref|YP_001561838.1| TetR family transcriptional regulator [Delft... 223 1e-56 ref|YP_004491052.1| regulatory protein TetR [Delftia sp. Cs1-4] ... 223 1e-56 >ref|YP_003777501.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65593.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 196/206 (95%), Positives = 201/206 (97%) Query: 1 MPRKRAAGYDNQRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLM 60 MPRKRAAGYDNQRETI+EQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLM Sbjct: 1 MPRKRAAGYDNQRETIVEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLM 60 Query: 61 HICEDHIDRLCALVDEVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRVLTEDVRFLEPGD 120 HICEDHIDRLCALVDEVAQQ+L PEPRLRLL+QRFVEEYRDAQNEHRVLTEDVRFLEPGD Sbjct: 61 HICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQRFVEEYRDAQNEHRVLTEDVRFLEPGD 120 Query: 121 QKRILTGERKVVKAVAEAMCAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHER 180 QKRIL GERKVVKAVA+AM AVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHER Sbjct: 121 QKRILNGERKVVKAVADAMSAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHER 180 Query: 181 MAVVVSDLLFGGIGAVSLEGTGKKKR 206 MAVVVSDLLFGGIGAV L+G GKKKR Sbjct: 181 MAVVVSDLLFGGIGAVGLDGAGKKKR 206 >ref|YP_998675.1| TetR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM59657.1| transcriptional regulator, TetR family [Verminephrobacter eiseniae EF01-2] Length = 212 Score = 251 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 120/198 (60%), Positives = 149/198 (75%) Query: 1 MPRKRAAGYDNQRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLM 60 M R R+ GYD QR+ I AAALFA+ G+ TSMNEVA ACGLSK +LYHYF DK+ LL+ Sbjct: 1 MARGRSPGYDEQRDMIARHAAALFAQRGYPATSMNEVAQACGLSKPTLYHYFRDKYHLLL 60 Query: 61 HICEDHIDRLCALVDEVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRVLTEDVRFLEPGD 120 HI +DH+ RL ALVD++ Q++L PEPRLR LI+RFV+EY A++ HRVLTEDV+FL+P D Sbjct: 61 HIADDHVSRLQALVDDIGQRQLPPEPRLRALIERFVQEYAQARDAHRVLTEDVKFLQPED 120 Query: 121 QKRILTGERKVVKAVAEAMCAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHER 180 +L ER VV A A A+ +RPE + + + K L MLLFGMINWMF WL+PDGEL HE Sbjct: 121 SALVLNKERAVVAAFANALAQMRPETEAAGLTKALTMLLFGMINWMFTWLRPDGELKHET 180 Query: 181 MAVVVSDLLFGGIGAVSL 198 MA +V+DL FGG+ AV L Sbjct: 181 MAPIVADLFFGGVVAVQL 198 >ref|YP_001561602.1| TetR family transcriptional regulator [Delftia acidovorans SPH-1] ref|YP_004485910.1| TetR family transcriptional regulator [Delftia sp. Cs1-4] gb|ABX33217.1| transcriptional regulator, TetR family [Delftia acidovorans SPH-1] gb|AEF87555.1| transcriptional regulator, TetR family [Delftia sp. Cs1-4] Length = 219 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 119/200 (59%), Positives = 153/200 (76%) Query: 1 MPRKRAAGYDNQRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLM 60 M R R++GYD+QRE I+ AAALFAR+G+ GTSMNEVA ACGLSK ++YHYF DK+ LL+ Sbjct: 1 MARGRSSGYDDQRELILGHAAALFARSGYPGTSMNEVAQACGLSKPTIYHYFRDKYALLV 60 Query: 61 HICEDHIDRLCALVDEVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRVLTEDVRFLEPGD 120 I + H+ RL +LVDEV L PEPRLR+LI+RFV+EY A++ HRVLTEDVRFL+ D Sbjct: 61 DITDGHMTRLQSLVDEVQSMGLPPEPRLRMLIERFVQEYAHARHAHRVLTEDVRFLQDDD 120 Query: 121 QKRILTGERKVVKAVAEAMCAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHER 180 ++R+L ER VV+ A+A+ +RP+ D + ++K LAMLLFGM+NWMF WL+PDG L HE Sbjct: 121 RQRVLGKERAVVETFAQAVAQLRPDADGAGLSKALAMLLFGMMNWMFTWLRPDGSLDHEA 180 Query: 181 MAVVVSDLLFGGIGAVSLEG 200 MA VV+DL GG+ AV G Sbjct: 181 MAPVVADLFLGGLPAVQTPG 200 >ref|YP_001561838.1| TetR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX33453.1| transcriptional regulator, TetR family [Delftia acidovorans SPH-1] Length = 211 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 121/207 (58%), Positives = 143/207 (69%), Gaps = 2/207 (0%) Query: 1 MPRKR-AAGYDNQRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLL 59 M R R AGYD QRE I+ AA LFA+ G+ GTSMNEVA ACG+SKA+LYHY DKH L Sbjct: 1 MARVRDPAGYDGQREMILSHAAQLFAQRGYAGTSMNEVAAACGVSKATLYHYVLDKHDLA 60 Query: 60 MHICEDHIDRLCALVDEVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRVLTEDVRFLEPG 119 + I E+H+ RL ALV++ Q DPE RL LI+ F +EY AQN HRVLTEDVRFL Sbjct: 61 VRIAEEHVLRLEALVNDTLQAHADPEQRLHALIRGFGQEYAQAQNAHRVLTEDVRFLREE 120 Query: 120 DQKRILTGERKVVKAVAEAMCAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHE 179 DQ+RIL ER+VV A A+ + VR E S + KPLAMLLFGMINW F WLKP G L H+ Sbjct: 121 DQQRILDVERRVVAAFAQTIAQVRGEPADSALGKPLAMLLFGMINWTFTWLKPGGTLDHD 180 Query: 180 RMAVVVSDLLFGGIGAVSLEGTGKKKR 206 + +VS L FGG+ AVS+ GKK R Sbjct: 181 AIGTMVSQLFFGGVRAVSVP-DGKKPR 206 >ref|YP_004491052.1| regulatory protein TetR [Delftia sp. Cs1-4] gb|AEF92697.1| regulatory protein TetR [Delftia sp. Cs1-4] Length = 211 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 118/207 (57%), Positives = 142/207 (68%), Gaps = 1/207 (0%) Query: 1 MPRKR-AAGYDNQRETIIEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLL 59 M R R AGYD QRE I+ AA LFA+ G+ GTSMNEVA ACG+SKA+LYHY DKH L Sbjct: 1 MARVRDPAGYDGQREMILSHAAQLFAQRGYAGTSMNEVAAACGVSKATLYHYVIDKHDLA 60 Query: 60 MHICEDHIDRLCALVDEVAQQELDPEPRLRLLIQRFVEEYRDAQNEHRVLTEDVRFLEPG 119 + I E+H+ RL ALV++ Q DPE RL LI+ F +EY AQN HRVLTEDVRFL Sbjct: 61 VRIAEEHVLRLEALVNDTLQAHADPEQRLHALIRGFGQEYAQAQNAHRVLTEDVRFLREQ 120 Query: 120 DQKRILTGERKVVKAVAEAMCAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHE 179 DQ+RIL ER+VV A A+ + VR E S + KPLAMLLFGMINW F WLKP G L H+ Sbjct: 121 DQQRILDVERRVVAAFAQTIAQVRGEPADSALGKPLAMLLFGMINWTFTWLKPGGTLDHD 180 Query: 180 RMAVVVSDLLFGGIGAVSLEGTGKKKR 206 + +VS L FGG+ AVS+ K ++ Sbjct: 181 AIGTMVSQLFFGGVRAVSVPDAKKPRK 207