BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2407.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777500.1| branched-chain amino acid ABC transporter pe... 657 0.0 ref|YP_004153650.1| extracellular ligand-binding receptor [Vario... 506 e-141 ref|YP_002943147.1| extracellular ligand-binding receptor [Vario... 504 e-140 gb|EGW62798.1| Extracellular ligand-binding receptor [Dechloroso... 496 e-138 ref|YP_931815.1| ABC transporter substrate-binding protein [Azoa... 496 e-138 >ref|YP_003777500.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65592.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 381 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 363/381 (95%), Positives = 371/381 (97%) Query: 14 MQFARPLLALALAGCALVARADINVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNY 73 MQFARPLLALALAGCALVARADINVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNY Sbjct: 1 MQFARPLLALALAGCALVARADINVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNY 60 Query: 74 IVLDDASDTTQAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAAEAQTPMISLAAAARI 133 I+LDDASDTTQAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAA+AQTPMISLAAAARI Sbjct: 61 IILDDASDTTQAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAADAQTPMISLAAAARI 120 Query: 134 VEPMDAKKKWVFKTPQNDIMMSLAIAKDMVARGYQRIAFIGYSNAYGEGWYEEFKKAAGL 193 VEPMDAKKKWVFKTPQNDIMMSLAIA+DMVARGYQRIAFIGYSNAYGEGWYEEFKKAAGL Sbjct: 121 VEPMDAKKKWVFKTPQNDIMMSLAIARDMVARGYQRIAFIGYSNAYGEGWYEEFKKAAGL 180 Query: 194 KKLELVANERFAPNDTSATAQALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIYQ 253 KKLELVANERFAP D+S TAQALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIYQ Sbjct: 181 KKLELVANERFAPTDSSTTAQALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIYQ 240 Query: 254 THGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPAANPIRKVALDYTAKYEAAHGKDSVS 313 THGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPA+NPIRKVALDYT KYEA HGKDSVS Sbjct: 241 THGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPASNPIRKVALDYTTKYEAVHGKDSVS 300 Query: 314 LFGGYAWDAGVLLQAAIPAALKRGKPGTPEFRAALRDALEATKEVTGVHGVYNMSATDHL 373 LFGGYAWDAGVLL+ AIP ALK KPGTPEFRAALRD LEATKEVTGVHGVY MS+TDHL Sbjct: 301 LFGGYAWDAGVLLRWAIPVALKGAKPGTPEFRAALRDVLEATKEVTGVHGVYTMSSTDHL 360 Query: 374 GLDQRASVMVKIVDGAWQYQP 394 GLDQRA+VMVKIVDGAWQYQP Sbjct: 361 GLDQRAAVMVKIVDGAWQYQP 381 >ref|YP_004153650.1| extracellular ligand-binding receptor [Variovorax paradoxus EPS] gb|ADU35539.1| Extracellular ligand-binding receptor [Variovorax paradoxus EPS] Length = 382 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 262/379 (69%), Positives = 321/379 (84%) Query: 16 FARPLLALALAGCALVARADINVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNYIV 75 F +PLL AL A A AD+NVGVTVS TGPAASLGIPEKNTIAL+P TI G K+NYIV Sbjct: 4 FFQPLLIAALCATAAAAWADVNVGVTVSATGPAASLGIPEKNTIALMPKTIGGQKINYIV 63 Query: 76 LDDASDTTQAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAAEAQTPMISLAAAARIVE 135 LDDASDTT AV N R+ ++EN VD+++GS+ +PNS++MI+V +EA+ PMIS+AA+ARI+E Sbjct: 64 LDDASDTTAAVANTRKLIAENKVDIVLGSTTTPNSLAMIDVVSEAKVPMISIAASARIIE 123 Query: 136 PMDAKKKWVFKTPQNDIMMSLAIAKDMVARGYQRIAFIGYSNAYGEGWYEEFKKAAGLKK 195 PMDAKKKWVFKTPQNDIMMSLAIA+ M A G + +A+IG+S+AYGEGW EEF KAA LKK Sbjct: 124 PMDAKKKWVFKTPQNDIMMSLAIAEHMAANGVKTVAYIGFSDAYGEGWSEEFAKAAALKK 183 Query: 196 LELVANERFAPNDTSATAQALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIYQTH 255 + +VANERF+ +DTS T QALK++AAKPDA+L+ SGTPA +PQ+ LKERG+ G++YQTH Sbjct: 184 ITVVANERFSRSDTSVTGQALKIMAAKPDAVLVGGSGTPAALPQKTLKERGYTGKMYQTH 243 Query: 256 GVANADFLRVGGKMLDGTLLPAGPVLVAAQLPAANPIRKVALDYTAKYEAAHGKDSVSLF 315 GVAN+DFLRVGGK ++GT LPAGPVLVAAQLPA NP++K AL Y YEAA+GK +VS F Sbjct: 244 GVANSDFLRVGGKDVEGTFLPAGPVLVAAQLPADNPVKKSALAYVTAYEAANGKGTVSTF 303 Query: 316 GGYAWDAGVLLQAAIPAALKRGKPGTPEFRAALRDALEATKEVTGVHGVYNMSATDHLGL 375 G +AWDAG+L+ +A+P ALK+ +PGTPEFRAALRDALE TK+V+G HGV+NM+ DHLGL Sbjct: 304 GAHAWDAGLLMTSAVPVALKKAQPGTPEFRAALRDALEQTKDVSGAHGVFNMTEKDHLGL 363 Query: 376 DQRASVMVKIVDGAWQYQP 394 DQRA VMVKI +GAW+YQP Sbjct: 364 DQRARVMVKIENGAWKYQP 382 >ref|YP_002943147.1| extracellular ligand-binding receptor [Variovorax paradoxus S110] gb|ACS17881.1| Extracellular ligand-binding receptor [Variovorax paradoxus S110] Length = 382 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 263/379 (69%), Positives = 323/379 (85%) Query: 16 FARPLLALALAGCALVARADINVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNYIV 75 F +PLL AL A A AD+NVGVT+S TGPAASLGIPEKNTIAL+P TI G K+NYIV Sbjct: 4 FFKPLLIAALCATAAAAWADVNVGVTLSATGPAASLGIPEKNTIALMPKTIGGQKINYIV 63 Query: 76 LDDASDTTQAVKNARRFVSENNVDVIVGSSVSPNSISMIEVAAEAQTPMISLAAAARIVE 135 LDDASDTT AV N R+ ++EN VD+++GS+ +PNS++MI+V +EA+TPMIS+AA+ARIVE Sbjct: 64 LDDASDTTAAVANTRKLIAENKVDIVLGSTTTPNSLAMIDVVSEAKTPMISIAASARIVE 123 Query: 136 PMDAKKKWVFKTPQNDIMMSLAIAKDMVARGYQRIAFIGYSNAYGEGWYEEFKKAAGLKK 195 PMDAKK+WVFKTPQNDIMMSLAIA+ M A G + +AFIG+S+AYGEGW +EF KAA LKK Sbjct: 124 PMDAKKQWVFKTPQNDIMMSLAIAEHMAASGVKTVAFIGFSDAYGEGWSQEFAKAAELKK 183 Query: 196 LELVANERFAPNDTSATAQALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIYQTH 255 L++VANER+A DTS T QALK++AAK DA+L+A SGTPA +PQ+ LKERG+ G++YQTH Sbjct: 184 LKIVANERYARTDTSVTGQALKIMAAKADAVLVAGSGTPAALPQKTLKERGYTGKMYQTH 243 Query: 256 GVANADFLRVGGKMLDGTLLPAGPVLVAAQLPAANPIRKVALDYTAKYEAAHGKDSVSLF 315 GVANADFLRVGGK ++GT LPAGPVLVA QLPA++P++K A+ Y YEAA+GK+SVS F Sbjct: 244 GVANADFLRVGGKDVEGTFLPAGPVLVAEQLPASHPVKKSAMAYVTAYEAANGKNSVSTF 303 Query: 316 GGYAWDAGVLLQAAIPAALKRGKPGTPEFRAALRDALEATKEVTGVHGVYNMSATDHLGL 375 G +AWDAG+L+ +A+P ALK+ +PGTPEFRAALRDALE KEV+G HGV+NM+A DHLGL Sbjct: 304 GAHAWDAGLLMTSAVPVALKKAQPGTPEFRAALRDALEQVKEVSGAHGVFNMTANDHLGL 363 Query: 376 DQRASVMVKIVDGAWQYQP 394 DQRA VMVKI +GAW+YQP Sbjct: 364 DQRARVMVKIENGAWKYQP 382 >gb|EGW62798.1| Extracellular ligand-binding receptor [Dechlorosoma suillum PS] Length = 389 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 243/363 (66%), Positives = 304/363 (83%) Query: 32 ARADINVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNYIVLDDASDTTQAVKNARR 91 ARAD+NVG++VS TGPAASLGIPEKN++ALLP +I GHKVNYIVLDDASDTT AVKNAR+ Sbjct: 27 ARADLNVGISVSATGPAASLGIPEKNSVALLPASIGGHKVNYIVLDDASDTTAAVKNARK 86 Query: 92 FVSENNVDVIVGSSVSPNSISMIEVAAEAQTPMISLAAAARIVEPMDAKKKWVFKTPQND 151 ++E+ VDVIVGS+ SPNS++MI+ AE +TPM++LAA++RIVEPMD K++WVFK QND Sbjct: 87 LIAEHRVDVIVGSTTSPNSLAMIDAVAEGETPMLALAASSRIVEPMDEKRRWVFKLAQND 146 Query: 152 IMMSLAIAKDMVARGYQRIAFIGYSNAYGEGWYEEFKKAAGLKKLELVANERFAPNDTSA 211 M+ A+ + M ++ + +A+IG+++AYGEGW+ EF K A +KL LVANERF+ +DTS Sbjct: 147 AHMATALVESMTSQQVRSVAYIGFADAYGEGWFNEFAKIAEARKLRLVANERFSRSDTSV 206 Query: 212 TAQALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIYQTHGVANADFLRVGGKMLD 271 T Q LK++AA+PDA+LI +GTPA +PQ+ L+ERG+KG IYQTHGVAN+DFLRVGGK ++ Sbjct: 207 TGQVLKVLAARPDAVLIGGAGTPAALPQKTLRERGYKGLIYQTHGVANSDFLRVGGKEVE 266 Query: 272 GTLLPAGPVLVAAQLPAANPIRKVALDYTAKYEAAHGKDSVSLFGGYAWDAGVLLQAAIP 331 GTLLPAGPVLVAAQLPA NPIRKVALDY +YEA HGK SVS FG + WDAG+LLQ A+P Sbjct: 267 GTLLPAGPVLVAAQLPADNPIRKVALDYVGRYEAVHGKGSVSTFGAHVWDAGLLLQHAVP 326 Query: 332 AALKRGKPGTPEFRAALRDALEATKEVTGVHGVYNMSATDHLGLDQRASVMVKIVDGAWQ 391 ALK+ +PG+PEFR ALR+ALE T++V G HGVYNM TDHLG DQRA VMV+I +GAW+ Sbjct: 327 LALKKAQPGSPEFRKALREALENTRDVVGCHGVYNMGPTDHLGFDQRARVMVRIDNGAWK 386 Query: 392 YQP 394 QP Sbjct: 387 LQP 389 >ref|YP_931815.1| ABC transporter substrate-binding protein [Azoarcus sp. BH72] emb|CAL92928.1| probable ABC transporter substrate binding protein [Azoarcus sp. BH72] Length = 381 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 249/357 (69%), Positives = 297/357 (83%) Query: 35 DINVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNYIVLDDASDTTQAVKNARRFVS 94 D+NVGV VS TGPAASLGIPEKNTIAL+P TI G KVNYIVLDDASDTT AVKN R+ +S Sbjct: 22 DLNVGVVVSATGPAASLGIPEKNTIALMPATIGGEKVNYIVLDDASDTTTAVKNIRKLLS 81 Query: 95 ENNVDVIVGSSVSPNSISMIEVAAEAQTPMISLAAAARIVEPMDAKKKWVFKTPQNDIMM 154 E+ VDV+VGS+++PNS++MI+V AEA TPMIS+AA+ARIVEP+D KK+WVFKTPQND M Sbjct: 82 EDKVDVVVGSTITPNSLAMIDVTAEAATPMISMAASARIVEPIDDKKRWVFKTPQNDAQM 141 Query: 155 SLAIAKDMVARGYQRIAFIGYSNAYGEGWYEEFKKAAGLKKLELVANERFAPNDTSATAQ 214 S AI + M + G + +AFIG+++AYGEGWYE+FK A +KL++VANERF DTS T Q Sbjct: 142 STAIIEHMTSNGVKTVAFIGFADAYGEGWYEQFKSVAEARKLQIVANERFNRTDTSVTGQ 201 Query: 215 ALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIYQTHGVANADFLRVGGKMLDGTL 274 LK++AAKPDA+LIA SGTP+ +PQ+ LKERG+ G+ YQTHGVAN DFLRV GK +GT Sbjct: 202 VLKVMAAKPDAVLIAGSGTPSALPQKTLKERGYAGKYYQTHGVANNDFLRVCGKDCEGTF 261 Query: 275 LPAGPVLVAAQLPAANPIRKVALDYTAKYEAAHGKDSVSLFGGYAWDAGVLLQAAIPAAL 334 LPAGPVLVAAQLP +NP++K AL+Y KYEAAHGK SVS FG +AWDAGVLLQAA+P AL Sbjct: 262 LPAGPVLVAAQLPDSNPVKKAALEYINKYEAAHGKGSVSTFGAHAWDAGVLLQAAVPVAL 321 Query: 335 KRGKPGTPEFRAALRDALEATKEVTGVHGVYNMSATDHLGLDQRASVMVKIVDGAWQ 391 K+ KPGT EFRAALRDALE KE G HG++NMSATDHLG DQRA VMV+I +G W+ Sbjct: 322 KKAKPGTKEFRAALRDALEGVKETAGAHGIFNMSATDHLGFDQRARVMVQIQNGGWK 378