BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2401.p (443 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002871626.1| hypothetical protein PFLU2000 [Pseudomonas f... 531 e-149 ref|YP_370523.1| permease for cytosine/purines, uracil, thiamine... 506 e-141 ref|YP_336875.1| hypothetical protein BURPS1710b_A1718 [Burkhold... 497 e-138 ref|ZP_04955364.1| putative membrane protein [Burkholderia pseud... 497 e-138 ref|ZP_02413914.1| hypothetical protein Bpse14_23941 [Burkholder... 497 e-138 >ref|YP_002871626.1| hypothetical protein PFLU2000 [Pseudomonas fluorescens SBW25] emb|CAY48243.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 440 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 302/434 (69%), Positives = 345/434 (79%), Gaps = 1/434 (0%) Query: 1 MAGLSHTQNKETDLSTHSVPASARMGKLSLTMAWWAVCSAIFYIVVGASLALTYGARNAL 60 MA LS + D + H VPA ARMG+LSLTMAWWAVCSA+FYIVVGASLAL+YGARNAL Sbjct: 1 MAALSQSSQTGQDPANHPVPADARMGRLSLTMAWWAVCSAMFYIVVGASLALSYGARNAL 60 Query: 61 IGMVLSVISYGLINACISRYAMRTGLSVALFSRILFGRLGASLATLIFFSTAIYYAVFEG 120 IGMVLSVISYGL+N+ +SR+A+R+GLSVALFSR+LFG GA LATLIFFSTAIYYAVFEG Sbjct: 61 IGMVLSVISYGLVNSVLSRFAIRSGLSVALFSRLLFGSTGACLATLIFFSTAIYYAVFEG 120 Query: 121 SVIAVALHHLYPSLLYPVAALIVVLYSVPLVFGSVQNWLDKFNGVLLPFYLLGLLMALVL 180 SVIAVAL+HLYP L++P+AAL+VVLYSVP++ GSVQ+WLDK NGVLLP YL GLL+A+ L Sbjct: 121 SVIAVALNHLYPQLVFPLAALLVVLYSVPMILGSVQHWLDKLNGVLLPVYLGGLLVAVGL 180 Query: 181 AVSQYGYQPQWLDFGPAVPPADGWWSCFTYYMGVWVLMMFTFDYARFGKPEDATYHGRFN 240 ++S+YGYQPQWLDFGPA P A GWW CF YMG+WVLM+FTFDYARFGKP+DA YHGR+N Sbjct: 181 SISRYGYQPQWLDFGPATPSAFGWWDCFVAYMGIWVLMLFTFDYARFGKPKDAEYHGRWN 240 Query: 241 FGMPFYLVTILLNGAAGIYLASSIPQDGPLSEVSVVMAILKLMGFWGLLFVWVTQTRINT 300 FGMPFY VT LLNGAAGIYL SSIP +G L+EVSVVMAIL+LMG WGLLFVW TQTRINT Sbjct: 241 FGMPFYAVTFLLNGAAGIYLVSSIPHEGALNEVSVVMAILQLMGLWGLLFVWATQTRINT 300 Query: 301 ANYYLATVNMQAFFGNLLGLHASRLVWSVVVGAVVYALMLADVFSYLLKALAYQGVFVVA 360 ANYYLAT+NMQAFF G+ S L+W++ VG +VY LMLADVF+YLLKALAYQG+FVVA Sbjct: 301 ANYYLATMNMQAFFAR-FGIRGSYLMWALTVGVIVYGLMLADVFTYLLKALAYQGIFVVA 359 Query: 361 WVGVALAHILTVPDHAGTGEGSAGINRVGLGAWFCGVVPGFVLMEMTGFWPSLSAPLTFV 420 WVGVALA IL E N GL AWF G LM S SAP T + Sbjct: 360 WVGVALAQILYGRSEVAALERVKAFNSAGLSAWFGATALGLALMFSGPGLSSFSAPSTVI 419 Query: 421 ASMGVYALWQQRGR 434 + + A R R Sbjct: 420 VAFALQAGLSHRSR 433 >ref|YP_370523.1| permease for cytosine/purines, uracil, thiamine, allantoin tranporter [Burkholderia sp. 383] gb|ABB09879.1| Permease for cytosine/purines, uracil, thiamine, allantoin transporter [Burkholderia sp. 383] Length = 451 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 317/450 (70%), Positives = 353/450 (78%), Gaps = 15/450 (3%) Query: 1 MAGLSHTQ-NKETDLSTHSVPASARMGKLSLTMAWWAVCSAIFYIVVGASLALTYGARNA 59 MA L+ + +++ DLST +VP ARM SLTMAWWAVCSA+FYIVVGA+LALTYGARNA Sbjct: 1 MANLAQGRPDEDLDLSTLAVPDHARMPPFSLTMAWWAVCSAVFYIVVGATLALTYGARNA 60 Query: 60 LIGMVLSVISYGLINACISRYAMRTGLSVALFSRILFGRLGASLATLIFFSTAIYYAVFE 119 LIGM LSV+SYGL+N ISRYA+RTGLSVALFSR+LFG GA+LATLIFF+TAIYYAVFE Sbjct: 61 LIGMALSVVSYGLVNTIISRYAIRTGLSVALFSRVLFGSAGAALATLIFFATAIYYAVFE 120 Query: 120 GSVIAVALHHLYPSLLYPVAALIVVLYSVPLVFGSVQNWLDKFNGVLLPFYLLGLLMALV 179 GSVIAVA HH +P L Y AALIVV YSVPLVFGSVQ+WLDKFNGVLLPFYLLGLL A+ Sbjct: 121 GSVIAVAAHHQFPGLDYKWAALIVVCYSVPLVFGSVQHWLDKFNGVLLPFYLLGLLAAVG 180 Query: 180 LAVSQYGYQPQWLDFGP-AVPPADGWWSCFTYYMGVWVLMMFTFDYARFGKPEDATYHGR 238 LA ++YGY WLDFGP PA GWW CF YYMGVWVLMMFTFDYARFG+ EDA YHGR Sbjct: 181 LATAEYGYNAAWLDFGPTGAAPAGGWWHCFVYYMGVWVLMMFTFDYARFGRKEDAGYHGR 240 Query: 239 FNFGMPFYLVTILLNGAAGIYLASSIPQDGPLSEVSVVMAILKLMGFWGLLFVWVTQTRI 298 FNFGMPFYLVT L+NGAAGIYL S+IP G LSEVSVV+A+LKLM WGLLFVWVTQ+RI Sbjct: 241 FNFGMPFYLVTFLVNGAAGIYLVSTIPGLGTLSEVSVVLALLKLMSVWGLLFVWVTQSRI 300 Query: 299 NTANYYLATVNMQAFFGNLLGLHASRLVWSVVVGAVVYALMLADVFSYLLKALAYQGVFV 358 NTANYYLATVNMQAFF L GL A + VW++VVGAVVYALM+AD+FS +L+ALAYQG+FV Sbjct: 301 NTANYYLATVNMQAFFLKLAGLRAPKFVWALVVGAVVYALMMADIFSRILQALAYQGIFV 360 Query: 359 VAWVGVALAHILTVPDHAGTGEGS---------AGINRVGLGAWFCGVVPGFVLMEMTGF 409 VAWVGVALAHIL+ D G G N GL AWF G G L + TGF Sbjct: 361 VAWVGVALAHILS--DRYGQLVGDDVECRDAHVPTFNPGGLAAWFAGAFTGLALNQATGF 418 Query: 410 WPSLSAPLTFVASMGVYALWQQRGRAGKTW 439 SLSAP TFV S VY G A +TW Sbjct: 419 AASLSAPATFVVSWVVYR--ALLGTAKRTW 446 >ref|YP_336875.1| hypothetical protein BURPS1710b_A1718 [Burkholderia pseudomallei 1710b] ref|ZP_02473737.1| hypothetical protein BpseB_23361 [Burkholderia pseudomallei B7210] ref|ZP_02484188.1| hypothetical protein Bpse7_23795 [Burkholderia pseudomallei 7894] ref|ZP_02508499.1| hypothetical protein BpseBC_22853 [Burkholderia pseudomallei BCC215] gb|ABA51243.1| putative membrane protein [Burkholderia pseudomallei 1710b] Length = 451 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 308/424 (72%), Positives = 341/424 (80%), Gaps = 8/424 (1%) Query: 11 ETDLSTHSVPASARMGKLSLTMAWWAVCSAIFYIVVGASLALTYGARNALIGMVLSVISY 70 E DLST ++P +ARM SLTMAWWAVCSA+FYIVVGA+LAL YGARNALIGMVLSV+SY Sbjct: 12 ELDLSTLALPQAARMPAFSLTMAWWAVCSAVFYIVVGATLALDYGARNALIGMVLSVVSY 71 Query: 71 GLINACISRYAMRTGLSVALFSRILFGRLGASLATLIFFSTAIYYAVFEGSVIAVALHHL 130 GL+NA ISRYA+RTGLSVALFSR+LFG GA+LATLIFF+TAIYYAVFEGSVIAVA H L Sbjct: 72 GLVNAAISRYAIRTGLSVALFSRVLFGSAGAALATLIFFATAIYYAVFEGSVIAVAAHGL 131 Query: 131 YPSLLYPVAALIVVLYSVPLVFGSVQNWLDKFNGVLLPFYLLGLLMALVLAVSQYGYQPQ 190 P+L Y AALIVV YSVPLVFGSVQ+WLDKFNGVLLPFYLLGLL A+ LA +YGY Sbjct: 132 MPALDYKWAALIVVCYSVPLVFGSVQHWLDKFNGVLLPFYLLGLLAAVALATHRYGYHAA 191 Query: 191 WLDFGP-AVPPADGWWSCFTYYMGVWVLMMFTFDYARFGKPEDATYHGRFNFGMPFYLVT 249 WLDFGP PA GWW CF YYMGVWVLMMFTFDYARFG+ DA YHGR+NFGMPFYLVT Sbjct: 192 WLDFGPKGGAPAHGWWHCFVYYMGVWVLMMFTFDYARFGREADADYHGRWNFGMPFYLVT 251 Query: 250 ILLNGAAGIYLASSIPQDGPLSEVSVVMAILKLMGFWGLLFVWVTQTRINTANYYLATVN 309 ++NGAAGIYL S+IP G LSEVSVV A+LKLMG WGLLFVWVTQ+RINTANYYLATVN Sbjct: 252 FVVNGAAGIYLVSTIPGLGALSEVSVVTALLKLMGVWGLLFVWVTQSRINTANYYLATVN 311 Query: 310 MQAFFGNLLGLHASRLVWSVVVGAVVYALMLADVFSYLLKALAYQGVFVVAWVGVALAHI 369 MQAFF GL A + VW++VVGAVVYALM+AD+FS LL+ALA+QGVF+VAWVGVALAHI Sbjct: 312 MQAFFQKAAGLRAPKYVWALVVGAVVYALMMADIFSKLLQALAWQGVFIVAWVGVALAHI 371 Query: 370 LTVPDHAGTGEG-------SAGINRVGLGAWFCGVVPGFVLMEMTGFWPSLSAPLTFVAS 422 L+ G G N GL AWF GV G +L TGF SLSAP+TFV S Sbjct: 372 LSTRYEELLGSGIECRDTHVPAFNPGGLSAWFAGVFAGMMLTTATGFAQSLSAPVTFVVS 431 Query: 423 MGVY 426 VY Sbjct: 432 WAVY 435 >ref|ZP_04955364.1| putative membrane protein [Burkholderia pseudomallei 1710a] gb|EET04886.1| putative membrane protein [Burkholderia pseudomallei 1710a] Length = 448 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 308/424 (72%), Positives = 341/424 (80%), Gaps = 8/424 (1%) Query: 11 ETDLSTHSVPASARMGKLSLTMAWWAVCSAIFYIVVGASLALTYGARNALIGMVLSVISY 70 E DLST ++P +ARM SLTMAWWAVCSA+FYIVVGA+LAL YGARNALIGMVLSV+SY Sbjct: 9 ELDLSTLALPQAARMPAFSLTMAWWAVCSAVFYIVVGATLALDYGARNALIGMVLSVVSY 68 Query: 71 GLINACISRYAMRTGLSVALFSRILFGRLGASLATLIFFSTAIYYAVFEGSVIAVALHHL 130 GL+NA ISRYA+RTGLSVALFSR+LFG GA+LATLIFF+TAIYYAVFEGSVIAVA H L Sbjct: 69 GLVNAAISRYAIRTGLSVALFSRVLFGSAGAALATLIFFATAIYYAVFEGSVIAVAAHGL 128 Query: 131 YPSLLYPVAALIVVLYSVPLVFGSVQNWLDKFNGVLLPFYLLGLLMALVLAVSQYGYQPQ 190 P+L Y AALIVV YSVPLVFGSVQ+WLDKFNGVLLPFYLLGLL A+ LA +YGY Sbjct: 129 MPALDYKWAALIVVCYSVPLVFGSVQHWLDKFNGVLLPFYLLGLLAAVALATHRYGYHAA 188 Query: 191 WLDFGP-AVPPADGWWSCFTYYMGVWVLMMFTFDYARFGKPEDATYHGRFNFGMPFYLVT 249 WLDFGP PA GWW CF YYMGVWVLMMFTFDYARFG+ DA YHGR+NFGMPFYLVT Sbjct: 189 WLDFGPKGGAPAHGWWHCFVYYMGVWVLMMFTFDYARFGREADADYHGRWNFGMPFYLVT 248 Query: 250 ILLNGAAGIYLASSIPQDGPLSEVSVVMAILKLMGFWGLLFVWVTQTRINTANYYLATVN 309 ++NGAAGIYL S+IP G LSEVSVV A+LKLMG WGLLFVWVTQ+RINTANYYLATVN Sbjct: 249 FVVNGAAGIYLVSTIPGLGALSEVSVVTALLKLMGVWGLLFVWVTQSRINTANYYLATVN 308 Query: 310 MQAFFGNLLGLHASRLVWSVVVGAVVYALMLADVFSYLLKALAYQGVFVVAWVGVALAHI 369 MQAFF GL A + VW++VVGAVVYALM+AD+FS LL+ALA+QGVF+VAWVGVALAHI Sbjct: 309 MQAFFQKAAGLRAPKYVWALVVGAVVYALMMADIFSKLLQALAWQGVFIVAWVGVALAHI 368 Query: 370 LTVPDHAGTGEG-------SAGINRVGLGAWFCGVVPGFVLMEMTGFWPSLSAPLTFVAS 422 L+ G G N GL AWF GV G +L TGF SLSAP+TFV S Sbjct: 369 LSTRYEELLGSGIECRDTHVPAFNPGGLSAWFAGVFAGMMLTTATGFAQSLSAPVTFVVS 428 Query: 423 MGVY 426 VY Sbjct: 429 WAVY 432 >ref|ZP_02413914.1| hypothetical protein Bpse14_23941 [Burkholderia pseudomallei 14] Length = 451 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 308/424 (72%), Positives = 341/424 (80%), Gaps = 8/424 (1%) Query: 11 ETDLSTHSVPASARMGKLSLTMAWWAVCSAIFYIVVGASLALTYGARNALIGMVLSVISY 70 E DLST ++P +ARM SLTMAWWAVCSA+FYIVVGA+LAL YGARNALIGMVLSV+SY Sbjct: 12 ELDLSTLALPQAARMPAFSLTMAWWAVCSAVFYIVVGATLALDYGARNALIGMVLSVVSY 71 Query: 71 GLINACISRYAMRTGLSVALFSRILFGRLGASLATLIFFSTAIYYAVFEGSVIAVALHHL 130 GL+NA ISRYA+RTGLSVALFSR+LFG GA+LATLIFF+TAIYYAVFEGSVIAVA H L Sbjct: 72 GLVNAAISRYAIRTGLSVALFSRVLFGSAGAALATLIFFATAIYYAVFEGSVIAVAAHGL 131 Query: 131 YPSLLYPVAALIVVLYSVPLVFGSVQNWLDKFNGVLLPFYLLGLLMALVLAVSQYGYQPQ 190 P+L Y AALIVV YSVPLVFGSVQ+WLDKFNGVLLPFYLLGLL A+ LA +YGY Sbjct: 132 MPALDYKWAALIVVCYSVPLVFGSVQHWLDKFNGVLLPFYLLGLLAAVALATHRYGYHAA 191 Query: 191 WLDFGP-AVPPADGWWSCFTYYMGVWVLMMFTFDYARFGKPEDATYHGRFNFGMPFYLVT 249 WLDFGP PA GWW CF YYMGVWVLMMFTFDYARFG+ DA YHGR+NFGMPFYLVT Sbjct: 192 WLDFGPKGGAPAHGWWHCFVYYMGVWVLMMFTFDYARFGREADAGYHGRWNFGMPFYLVT 251 Query: 250 ILLNGAAGIYLASSIPQDGPLSEVSVVMAILKLMGFWGLLFVWVTQTRINTANYYLATVN 309 ++NGAAGIYL S+IP G LSEVSVV A+LKLMG WGLLFVWVTQ+RINTANYYLATVN Sbjct: 252 FVVNGAAGIYLVSTIPGLGALSEVSVVTALLKLMGVWGLLFVWVTQSRINTANYYLATVN 311 Query: 310 MQAFFGNLLGLHASRLVWSVVVGAVVYALMLADVFSYLLKALAYQGVFVVAWVGVALAHI 369 MQAFF GL A + VW++VVGAVVYALM+AD+FS LL+ALA+QGVF+VAWVGVALAHI Sbjct: 312 MQAFFQKAAGLRAPKYVWALVVGAVVYALMMADIFSKLLQALAWQGVFIVAWVGVALAHI 371 Query: 370 LTVPDHAGTGEG-------SAGINRVGLGAWFCGVVPGFVLMEMTGFWPSLSAPLTFVAS 422 L+ G G N GL AWF GV G +L TGF SLSAP+TFV S Sbjct: 372 LSTRYEELIGSGIECRDTHVPAFNPGGLSAWFAGVFAGMMLTTATGFAQSLSAPVTFVVS 431 Query: 423 MGVY 426 VY Sbjct: 432 WAVY 435