BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2393.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777488.1| LysR family transcription regulator protein ... 576 e-162 ref|ZP_07797670.1| putative transcriptional regulator, LysR fami... 416 e-114 ref|YP_788664.1| LysR family transcriptional regulator [Pseudomo... 416 e-114 gb|AAT51159.1| PA0491 [synthetic construct] 416 e-114 gb|EGM15144.1| transcriptional regulator [Pseudomonas aeruginosa... 416 e-114 >ref|YP_003777488.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65580.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 300/305 (98%), Positives = 301/305 (98%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT Sbjct: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPG 120 DSGRHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPG Sbjct: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPG 120 Query: 121 IKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVRRLWLPARHALGER 180 IKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVRRLWLPARH LGER Sbjct: 121 IKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVRRLWLPARHPLGER 180 Query: 181 TVVNLSEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGVAI 240 T VNL+EVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGVAI Sbjct: 181 TAVNLAEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGVAI 240 Query: 241 LSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVTFTPAMEAVREYFRQSFLTPQL 300 LSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGV FTPAMEAVREYFRQSFL PQL Sbjct: 241 LSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVEFTPAMEAVREYFRQSFLAPQL 300 Query: 301 SSGRR 305 SSGRR Sbjct: 301 SSGRR 305 >ref|ZP_07797670.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gb|EFQ42766.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] dbj|BAK92516.1| LysR family transcriptional regulator [Pseudomonas aeruginosa NCGM2.S1] Length = 305 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 210/305 (68%), Positives = 250/305 (81%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 MA+TLRQ+RYF+ATAE GQISQAAIHL+ISQS+VTSAIQELE +LG LF R+ QGM LT Sbjct: 1 MALTLRQVRYFIATAEFGQISQAAIHLNISQSAVTSAIQELEGMLGVALFTRTAQGMNLT 60 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPG 120 DSGRHFLNHAYSI RSVDDA+ SP PD G+L+VAASYTV+GYFLPHHLQRL+Q YP Sbjct: 61 DSGRHFLNHAYSIQRSVDDALNSPQPDTRVDGTLKVAASYTVMGYFLPHHLQRLAQWYPE 120 Query: 121 IKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVRRLWLPARHALGER 180 +++ + E ERA IE+ L++G D+AV+LT NL IA ETLF S RRLWLP+RH LGE+ Sbjct: 121 LELQLFEDERASIERGLLDGRYDIAVLLTGNLTEPGIAAETLFNSERRLWLPSRHPLGEK 180 Query: 181 TVVNLSEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGVAI 240 + L++VA EP+I+LTVDEA ++ALRYW QSG +P +I+ TSS+EAVRSMVANGSGVAI Sbjct: 181 ADLGLADVAGEPYIMLTVDEAGQSALRYWQQSGHRPQVILHTSSVEAVRSMVANGSGVAI 240 Query: 241 LSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVTFTPAMEAVREYFRQSFLTPQL 300 LSDLVYRPWSLEG RIET+ L+D VP+M+VGLAWR+ + M A REYFRQSFL PQ Sbjct: 241 LSDLVYRPWSLEGKRIETLSLVDPVPSMSVGLAWRRDTEASAGMRAFREYFRQSFLAPQQ 300 Query: 301 SSGRR 305 SS RR Sbjct: 301 SSSRR 305 >ref|YP_788664.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gb|ABJ15456.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] dbj|GAA19418.1| probable transcriptional regulator [Pseudomonas aeruginosa NCMG1179] gb|AEO72979.1| putative transcriptional regulator [Pseudomonas aeruginosa M18] Length = 308 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 210/305 (68%), Positives = 250/305 (81%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 MA+TLRQ+RYF+ATAE GQISQAAIHL+ISQS+VTSAIQELE +LG LF R+ QGM LT Sbjct: 4 MALTLRQVRYFIATAEFGQISQAAIHLNISQSAVTSAIQELEGMLGVALFTRTAQGMNLT 63 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPG 120 DSGRHFLNHAYSI RSVDDA+ SP PD G+L+VAASYTV+GYFLPHHLQRL+Q YP Sbjct: 64 DSGRHFLNHAYSIQRSVDDALNSPQPDTRVDGTLKVAASYTVMGYFLPHHLQRLAQWYPE 123 Query: 121 IKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVRRLWLPARHALGER 180 +++ + E ERA IE+ L++G D+AV+LT NL IA ETLF S RRLWLP+RH LGE+ Sbjct: 124 LELQLFEDERASIERGLLDGRYDIAVLLTGNLTEPGIAAETLFNSERRLWLPSRHPLGEK 183 Query: 181 TVVNLSEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGVAI 240 + L++VA EP+I+LTVDEA ++ALRYW QSG +P +I+ TSS+EAVRSMVANGSGVAI Sbjct: 184 ADLGLADVAGEPYIMLTVDEAGQSALRYWQQSGHRPQVILHTSSVEAVRSMVANGSGVAI 243 Query: 241 LSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVTFTPAMEAVREYFRQSFLTPQL 300 LSDLVYRPWSLEG RIET+ L+D VP+M+VGLAWR+ + M A REYFRQSFL PQ Sbjct: 244 LSDLVYRPWSLEGKRIETLSLVDPVPSMSVGLAWRRDTEASAGMRAFREYFRQSFLAPQQ 303 Query: 301 SSGRR 305 SS RR Sbjct: 304 SSSRR 308 >gb|AAT51159.1| PA0491 [synthetic construct] Length = 309 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 210/305 (68%), Positives = 250/305 (81%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 MA+TLRQ+RYF+ATAE GQISQAAIHL+ISQS+VTSAIQELE +LG LF R+ QGM LT Sbjct: 4 MALTLRQVRYFIATAEFGQISQAAIHLNISQSAVTSAIQELEGMLGVALFTRTAQGMNLT 63 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPG 120 DSGRHFLNHAYSI RSVDDA+ SP PD G+L+VAASYTV+GYFLPHHLQRL+Q YP Sbjct: 64 DSGRHFLNHAYSIQRSVDDALNSPQPDTRVEGTLKVAASYTVMGYFLPHHLQRLAQWYPE 123 Query: 121 IKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVRRLWLPARHALGER 180 +++ + E ERA IE+ L++G D+AV+LT NL IA ETLF S RRLWLP+RH LGE+ Sbjct: 124 LELQLFEDERASIERGLLDGRYDIAVLLTGNLTEPGIAAETLFNSERRLWLPSRHPLGEK 183 Query: 181 TVVNLSEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGVAI 240 + L++VA EP+I+LTVDEA ++ALRYW QSG +P +I+ TSS+EAVRSMVANGSGVAI Sbjct: 184 ADLGLADVAGEPYIMLTVDEAGQSALRYWQQSGHRPQVILHTSSVEAVRSMVANGSGVAI 243 Query: 241 LSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVTFTPAMEAVREYFRQSFLTPQL 300 LSDLVYRPWSLEG RIET+ L+D VP+M+VGLAWR+ + M A REYFRQSFL PQ Sbjct: 244 LSDLVYRPWSLEGKRIETLSLVDPVPSMSVGLAWRRDTEASAGMRAFREYFRQSFLAPQQ 303 Query: 301 SSGRR 305 SS RR Sbjct: 304 SSSRR 308 >gb|EGM15144.1| transcriptional regulator [Pseudomonas aeruginosa 152504] gb|EGM16948.1| transcriptional regulator [Pseudomonas aeruginosa 138244] Length = 305 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 210/305 (68%), Positives = 250/305 (81%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 MA+TLRQ+RYF+ATAE GQISQAAIHL+ISQS+VTSAIQELE +LG LF R+ QGM LT Sbjct: 1 MALTLRQVRYFIATAEFGQISQAAIHLNISQSAVTSAIQELEGMLGVALFTRTAQGMNLT 60 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPG 120 DSGRHFLNHAYSI RSVDDA+ SP PD G+L+VAASYTV+GYFLPHHLQRL+Q YP Sbjct: 61 DSGRHFLNHAYSIQRSVDDALNSPQPDTRVEGTLKVAASYTVMGYFLPHHLQRLAQWYPE 120 Query: 121 IKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVRRLWLPARHALGER 180 +++ + E ERA IE+ L++G D+AV+LT NL IA ETLF S RRLWLP+RH LGE+ Sbjct: 121 LELQLFEDERASIERGLLDGRYDIAVLLTGNLTEPGIAAETLFNSERRLWLPSRHPLGEK 180 Query: 181 TVVNLSEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGVAI 240 + L++VA EP+I+LTVDEA ++ALRYW QSG +P +I+ TSS+EAVRSMVANGSGVAI Sbjct: 181 ADLGLADVAGEPYIMLTVDEAGQSALRYWQQSGHRPQVILHTSSVEAVRSMVANGSGVAI 240 Query: 241 LSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVTFTPAMEAVREYFRQSFLTPQL 300 LSDLVYRPWSLEG RIET+ L+D VP+M+VGLAWR+ + M A REYFRQSFL PQ Sbjct: 241 LSDLVYRPWSLEGKRIETLSLVDPVPSMSVGLAWRRDTEASAGMRAFREYFRQSFLAPQQ 300 Query: 301 SSGRR 305 SS RR Sbjct: 301 SSSRR 305