BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2389.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775383.1| endoribonuclease L-PSP protein [Herbaspirill...   217   4e-55
ref|YP_004752269.1| putative translation initiation inhibitor, y...   196   1e-48
ref|ZP_04945878.1| hypothetical protein BDAG_01794 [Burkholderia...   176   1e-42
ref|YP_003605574.1| Endoribonuclease L-PSP [Burkholderia sp. CCG...   175   2e-42
ref|ZP_06845900.1| Endoribonuclease L-PSP [Burkholderia sp. Ch1-...   175   2e-42

>ref|YP_003775383.1| endoribonuclease L-PSP protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63475.1| endoribonuclease L-PSP protein [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score =  217 bits (553), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 112/116 (96%), Positives = 113/116 (97%)

Query: 1   MSVQRLHVGKRLSEVAIHNGTVYLAGQIAEDATQNILGQTREVLGHIDRLLAEAGSDKTK 60
           MSVQRLHVG RLSEVAIHNGTVYLAGQIAED TQNI GQTREVLGHIDRLLAEAGSDK+K
Sbjct: 1   MSVQRLHVGNRLSEVAIHNGTVYLAGQIAEDTTQNIEGQTREVLGHIDRLLAEAGSDKSK 60

Query: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK 116
           ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK
Sbjct: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK 116


>ref|YP_004752269.1| putative translation initiation inhibitor, yjgF family [Collimonas
           fungivorans Ter331]
 gb|AEK61446.1| Putative translation initiation inhibitor, yjgF family [Collimonas
           fungivorans Ter331]
          Length = 116

 Score =  196 bits (497), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 96/116 (82%), Positives = 106/116 (91%)

Query: 1   MSVQRLHVGKRLSEVAIHNGTVYLAGQIAEDATQNILGQTREVLGHIDRLLAEAGSDKTK 60
           M++QRLHVGKRLSEVAIHNGT+YLAGQ+AED TQNI GQTRE LGHIDRLL EAGSDK  
Sbjct: 1   MTIQRLHVGKRLSEVAIHNGTIYLAGQLAEDTTQNIEGQTRESLGHIDRLLVEAGSDKHH 60

Query: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK 116
           ILSCQI+L+DVKDF GMNAVWD WV+  NAPPRATVEAKLARPE+L+EII+VAAQK
Sbjct: 61  ILSCQIYLADVKDFDGMNAVWDSWVSASNAPPRATVEAKLARPEILIEIIVVAAQK 116


>ref|ZP_04945878.1| hypothetical protein BDAG_01794 [Burkholderia dolosa AUO158]
 gb|EAY69049.1| hypothetical protein BDAG_01794 [Burkholderia dolosa AUO158]
          Length = 117

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 89/116 (76%), Positives = 99/116 (85%)

Query: 1   MSVQRLHVGKRLSEVAIHNGTVYLAGQIAEDATQNILGQTREVLGHIDRLLAEAGSDKTK 60
           M+V R HVG RLSE AIHNGTVYL+GQIAED TQ+I GQTREVLGHIDRLLAEA SDK  
Sbjct: 1   MAVIRHHVGPRLSETAIHNGTVYLSGQIAEDTTQDIKGQTREVLGHIDRLLAEANSDKAH 60

Query: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK 116
           +LS QI+LSD+ +F GMN VWD WVAPGN PPRATVEAKLA P LLVEI++VAAQ+
Sbjct: 61  LLSVQIYLSDLANFEGMNEVWDAWVAPGNTPPRATVEAKLADPALLVEIVVVAAQR 116


>ref|YP_003605574.1| Endoribonuclease L-PSP [Burkholderia sp. CCGE1002]
 gb|ADG16063.1| Endoribonuclease L-PSP [Burkholderia sp. CCGE1002]
          Length = 117

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 87/116 (75%), Positives = 102/116 (87%)

Query: 1   MSVQRLHVGKRLSEVAIHNGTVYLAGQIAEDATQNILGQTREVLGHIDRLLAEAGSDKTK 60
           M+V R HVGKRLSE+A+HNGTVYLAGQIAED  Q+I GQTREVLGHIDRLLAEA SDK+ 
Sbjct: 1   MAVIRYHVGKRLSEMAVHNGTVYLAGQIAEDDDQDITGQTREVLGHIDRLLAEADSDKSL 60

Query: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK 116
           +LS QI++SD+  FAGMNAVWDEWVA G+ PPRATVEAKLA P+ LVEI+++AAQ+
Sbjct: 61  LLSVQIYISDMAHFAGMNAVWDEWVAQGDTPPRATVEAKLANPKCLVEIVVIAAQR 116


>ref|ZP_06845900.1| Endoribonuclease L-PSP [Burkholderia sp. Ch1-1]
 gb|EFG66478.1| Endoribonuclease L-PSP [Burkholderia sp. Ch1-1]
          Length = 117

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/116 (74%), Positives = 100/116 (86%)

Query: 1   MSVQRLHVGKRLSEVAIHNGTVYLAGQIAEDATQNILGQTREVLGHIDRLLAEAGSDKTK 60
           M+V R HVGKRLSE+A+HNGTVYLAGQIAEDA Q+I GQTREVL HIDRLL E  SDK+ 
Sbjct: 1   MAVIRHHVGKRLSEIAVHNGTVYLAGQIAEDADQDITGQTREVLAHIDRLLGEVNSDKSH 60

Query: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK 116
           +LS QIF+SD+  FAGMNAVWDEW+APG  PPRATVEAKLA P+ LVE+++VAAQ+
Sbjct: 61  LLSVQIFISDMAHFAGMNAVWDEWIAPGATPPRATVEAKLANPKCLVEVVVVAAQR 116