BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2386.p         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773828.1| hypothetical protein Hsero_0395 [Herbaspiril...    55   3e-06

>ref|YP_003773828.1| hypothetical protein Hsero_0395 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61920.1| hypothetical protein Hsero_0395 [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 46/72 (63%)

Query: 1  MDKNQKAELERIQKELVDAHNKAAWQMAATIIKASLVKNGMDQPPTPAELADLNATITNL 60
          M K   AEL+RI++EL + +++AAW+ AA I +AS V++G+DQP  P E   L   +  L
Sbjct: 1  MSKPDNAELDRIRRELAEVYHEAAWKAAALITRASAVRDGLDQPLEPDEWESLRLILNRL 60

Query: 61 RSVAEDALELLK 72
           S A  A ++L+
Sbjct: 61 NSAARHAEQVLR 72