BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2385.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775381.1| lipoprotein protein [Herbaspirillum seropedi... 263 8e-69 ref|YP_004752346.1| hypothetical protein CFU_1691 [Collimonas fu... 182 3e-44 ref|YP_004701045.1| hypothetical protein PPS_1590 [Pseudomonas p... 180 1e-43 ref|YP_001667778.1| hypothetical protein PputGB1_1537 [Pseudomon... 180 1e-43 gb|ADR61257.1| Hypothetical protein, conserved [Pseudomonas puti... 177 8e-43 >ref|YP_003775381.1| lipoprotein protein [Herbaspirillum seropedicae SmR1] gb|ADJ63473.1| lipoprotein protein [Herbaspirillum seropedicae SmR1] Length = 185 Score = 263 bits (673), Expect = 8e-69, Method: Composition-based stats. Identities = 146/185 (78%), Positives = 156/185 (84%), Gaps = 1/185 (0%) Query: 1 MPRPRFSVPFFVITAATLGLTACTTGKTAFYHQEEFNDTSAFSRSFPGSEKAVCEAARRA 60 M PR V +L L AC T K AFYHQEEF+DTSAFSRSFPGSEKAVCEAARRA Sbjct: 1 MLHPRLPVSLCFAATLSLTLAACGT-KAAFYHQEEFSDTSAFSRSFPGSEKAVCEAARRA 59 Query: 61 LLGQGYVISKSTDNTLDGNKSFQPASDKHMEIAFHVVCASNGNGKSSTMFASATQDGYGI 120 LLGQGY+I+K+TDNT+DGNKSFQPASDKHMEIAFHVVCASNGNGKSSTMF SATQDGYGI Sbjct: 60 LLGQGYIITKATDNTMDGNKSFQPASDKHMEIAFHVVCASNGNGKSSTMFVSATQDGYGI 119 Query: 121 KKSNSSASLGVSVLGSVSMPFGSSDDSLVRVASETIRSAHFYDRFFGAVERYLAPGEDDA 180 KKSNSSASLGVSVLGSVSMPF +SDDS+VRV+SETIRS+ FYDRFFGA ERYL DD Sbjct: 120 KKSNSSASLGVSVLGSVSMPFAASDDSMVRVSSETIRSSDFYDRFFGAAERYLLVDVDDD 179 Query: 181 AKAGK 185 GK Sbjct: 180 TAPGK 184 >ref|YP_004752346.1| hypothetical protein CFU_1691 [Collimonas fungivorans Ter331] gb|AEK61523.1| hypothetical protein CFU_1691 [Collimonas fungivorans Ter331] Length = 260 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 94/153 (61%), Positives = 115/153 (75%), Gaps = 1/153 (0%) Query: 23 CTTGKTAFYHQEEFNDTSAFSRSFPGSEKAVCEAARRALLGQGYVISKSTDNTLDGNKSF 82 C+T K Y EEF++TS FS F S CEAARR LL QGY+I ++ D+ +DG+K F Sbjct: 82 CSTAKPKVYQGEEFSETSTFSHDFAKSSADTCEAARRTLLSQGYIIKQAKDDLVDGHKHF 141 Query: 83 QPASDKHMEIAFHVVCASNG-NGKSSTMFASATQDGYGIKKSNSSASLGVSVLGSVSMPF 141 QP SD H+EI FHVVCA+N GKSST+F SATQD Y +KK+N+SAS+G+SVLGSVSMP Sbjct: 142 QPESDVHVEIEFHVVCAANDKQGKSSTLFVSATQDRYALKKTNNSASVGLSVLGSVSMPI 201 Query: 142 GSSDDSLVRVASETIRSAHFYDRFFGAVERYLA 174 GS+ DSLV+VASETI + FYDRFFG +E YL Sbjct: 202 GSTSDSLVKVASETIPAGQFYDRFFGLIEHYLG 234 >ref|YP_004701045.1| hypothetical protein PPS_1590 [Pseudomonas putida S16] gb|AEJ12165.1| conserved hypothetical protein [Pseudomonas putida S16] Length = 279 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 99/180 (55%), Positives = 129/180 (71%), Gaps = 3/180 (1%) Query: 19 GLTACTTGKTAFYHQEEFNDTSAFSRSFPGSEKAVCEAARRALLGQGYVISKSTDNTLDG 78 G+T C++ K A Y E F+D+ FSRSFP S+ CEAARRALL QGY+I+ S N + G Sbjct: 18 GVTGCSSKKAAVYEHENFDDSGTFSRSFPVSDAGSCEAARRALLSQGYIITSSGANQVVG 77 Query: 79 NKSFQPASDKHMEIAFHVVCASN-GNGKSSTMFASATQDGYGIKKSNSSASLGVSVLGSV 137 NKSFQ S+ H++I+F+V CA + + + STMFA+A QD Y +KKSN+SASLGV VLGSV Sbjct: 78 NKSFQQNSENHLQISFNVTCAPDVSDEQRSTMFANALQDRYALKKSNTSASLGVGVLGSV 137 Query: 138 SMPFGSSDDSLVRVASETIRSAHFYDRFFGAVERYLAPGEDDAAKAGKTELDGPLPQPQK 197 SMP GSSDDS+V+VASET+ +A FYDR+F VE YL + +A K E++ P P +K Sbjct: 138 SMPIGSSDDSMVKVASETVTAAQFYDRYFALVESYLP--KPKPKQANKAEVEAPAPNVEK 195 >ref|YP_001667778.1| hypothetical protein PputGB1_1537 [Pseudomonas putida GB-1] gb|ABY97442.1| conserved hypothetical protein [Pseudomonas putida GB-1] Length = 270 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 99/180 (55%), Positives = 129/180 (71%), Gaps = 5/180 (2%) Query: 19 GLTACTTGKTAFYHQEEFNDTSAFSRSFPGSEKAVCEAARRALLGQGYVISKSTDNTLDG 78 G+T C++ K A Y E F+D+ FSRSFP S+ CEAARRALL QGY+I+ S N + G Sbjct: 18 GVTGCSSKKAAVYEHENFDDSGTFSRSFPVSDAGSCEAARRALLSQGYIITSSGANQVVG 77 Query: 79 NKSFQPASDKHMEIAFHVVCASN-GNGKSSTMFASATQDGYGIKKSNSSASLGVSVLGSV 137 NKSFQ S+ H++I+F+V CA + + + STMFA+A QD Y +KKSN+SASLGV VLGSV Sbjct: 78 NKSFQQNSENHLQISFNVTCAPDVSDEQRSTMFANALQDRYALKKSNTSASLGVGVLGSV 137 Query: 138 SMPFGSSDDSLVRVASETIRSAHFYDRFFGAVERYLAPGEDDAAKAGKTELDGPLPQPQK 197 SMP GSSDDS+V+VASET+ +A FYDR+F VE YL K K ++D P+P+ +K Sbjct: 138 SMPIGSSDDSMVKVASETVTAAQFYDRYFALVESYLP----KPKKVEKAKVDAPVPKVEK 193 >gb|ADR61257.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 294 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 99/180 (55%), Positives = 129/180 (71%), Gaps = 5/180 (2%) Query: 19 GLTACTTGKTAFYHQEEFNDTSAFSRSFPGSEKAVCEAARRALLGQGYVISKSTDNTLDG 78 G+T C++ K A Y E F+D+ FSRSFP S+ CEAARRALL QGY+I+ S N + G Sbjct: 18 GVTGCSSKKAAVYEHENFDDSGTFSRSFPVSDAGSCEAARRALLSQGYIITSSGANQVAG 77 Query: 79 NKSFQPASDKHMEIAFHVVCASN-GNGKSSTMFASATQDGYGIKKSNSSASLGVSVLGSV 137 NKSFQ S+ H++I+F+V CA + + + STMFA+A QD Y +KKSN+SASLGV VLGSV Sbjct: 78 NKSFQQNSENHLQISFNVTCAPDVSDDQHSTMFANALQDRYALKKSNTSASLGVGVLGSV 137 Query: 138 SMPFGSSDDSLVRVASETIRSAHFYDRFFGAVERYLAPGEDDAAKAGKTELDGPLPQPQK 197 SMP GSSDDSLV+VASET+ +A FYDR+F VE YL K K +++ P+P+ +K Sbjct: 138 SMPIGSSDDSLVKVASETVTAAQFYDRYFALVESYLP----KPKKVSKAKVEEPVPKVEK 193