BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2377.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003847992.1| response regulator receiver protein [Gallion...   149   1e-34
ref|ZP_08782556.1| response regulator receiver protein [Methylob...   142   1e-32
ref|YP_523146.1| response regulator receiver domain-containing p...   137   6e-31
ref|YP_003444405.1| response regulator receiver protein [Allochr...   102   2e-20
emb|CAM77865.1| response regulator receiver [Magnetospirillum gr...   100   9e-20

>ref|YP_003847992.1| response regulator receiver protein [Gallionella capsiferriformans
           ES-2]
 gb|ADL56228.1| response regulator receiver protein [Gallionella capsiferriformans
           ES-2]
          Length = 118

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/116 (62%), Positives = 94/116 (81%)

Query: 10  LLIVDDSKVSRMVIKANVLAVHPDWQVMEAGTGEEAIALVEQSVPDYCTMDINMPGMLGT 69
           +LIVDDS++SR++I+  +LA  P W ++EA +G+EA+ +VE  +PD+ +MDINMPGMLGT
Sbjct: 1   MLIVDDSRLSRLMIRTFILAKRPQWLIIEATSGDEALQMVEHDLPDFISMDINMPGMLGT 60

Query: 70  DAAAQILQAHPSVRIAIFSANIQEAVQTRAQQLGALFVAKPVTEKSIGQALLHFRG 125
           DAA QIL  HP +RIAIFSANIQE  QTRA +LGA FV+KPVTEK++ QAL HF G
Sbjct: 61  DAAEQILDKHPEIRIAIFSANIQETQQTRAIELGARFVSKPVTEKTVLQALDHFEG 116


>ref|ZP_08782556.1| response regulator receiver protein [Methylobacter tundripaludum
           SV96]
 gb|EGW20828.1| response regulator receiver protein [Methylobacter tundripaludum
           SV96]
          Length = 127

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/123 (56%), Positives = 89/123 (72%)

Query: 1   MASNDSGKTLLIVDDSKVSRMVIKANVLAVHPDWQVMEAGTGEEAIALVEQSVPDYCTMD 60
           M  + S K LLIVDDSKVSRM+I+ ++L   PDW + EA  GE+AI L +   PDYCTMD
Sbjct: 1   MPVDSSIKKLLIVDDSKVSRMLIRTHILVQRPDWVIFEAVCGEDAIELADNERPDYCTMD 60

Query: 61  INMPGMLGTDAAAQILQAHPSVRIAIFSANIQEAVQTRAQQLGALFVAKPVTEKSIGQAL 120
           INMPG+ GTDAA +IL  +P +++ IFSANIQE  + RA+  G++ VAKPVTEKSI   L
Sbjct: 61  INMPGISGTDAAERILSKYPLMKMVIFSANIQETHKNRARSFGSILVAKPVTEKSIALTL 120

Query: 121 LHF 123
            +F
Sbjct: 121 DYF 123


>ref|YP_523146.1| response regulator receiver domain-containing protein [Rhodoferax
           ferrireducens T118]
 gb|ABD69615.1| response regulator receiver domain protein [Rhodoferax
           ferrireducens T118]
          Length = 153

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 71/120 (59%), Positives = 93/120 (77%)

Query: 6   SGKTLLIVDDSKVSRMVIKANVLAVHPDWQVMEAGTGEEAIALVEQSVPDYCTMDINMPG 65
           S K++LIVDDS+VSR++I++ +LA  P W V EA +G+EA+AL      DYCTMDINMPG
Sbjct: 34  SPKSVLIVDDSRVSRLLIRSLILAQFPHWTVTEAVSGDEALALAAARPFDYCTMDINMPG 93

Query: 66  MLGTDAAAQILQAHPSVRIAIFSANIQEAVQTRAQQLGALFVAKPVTEKSIGQALLHFRG 125
           + GT+A  Q+L+  P+VR+A+FSANIQE+ Q RA QLGA FVAKPVT KS+  AL +F+G
Sbjct: 94  LQGTEATEQLLKMQPTVRVALFSANIQESQQIRATQLGAQFVAKPVTPKSVALALAYFQG 153


>ref|YP_003444405.1| response regulator receiver protein [Allochromatium vinosum DSM
           180]
 gb|ADC63373.1| response regulator receiver protein [Allochromatium vinosum DSM
           180]
          Length = 123

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 79/115 (68%)

Query: 9   TLLIVDDSKVSRMVIKANVLAVHPDWQVMEAGTGEEAIALVEQSVPDYCTMDINMPGMLG 68
           +LLIVDDS++SRM++   +  + PDW++ EA +G EA+ ++E+  P   ++D+NMPGM G
Sbjct: 7   SLLIVDDSRMSRMMLNRLIADLRPDWRITEAASGAEALEMIERDPPTLVSLDVNMPGMSG 66

Query: 69  TDAAAQILQAHPSVRIAIFSANIQEAVQTRAQQLGALFVAKPVTEKSIGQALLHF 123
            + A +I   +P +R+ I +ANIQ+ V+  A++ G  FV+KP+T +S+ + +  F
Sbjct: 67  LETAGRIRLHNPDIRVVICTANIQDYVRQAAEKAGVHFVSKPITPESVARMVAFF 121


>emb|CAM77865.1| response regulator receiver [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 163

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/104 (42%), Positives = 73/104 (70%)

Query: 8   KTLLIVDDSKVSRMVIKANVLAVHPDWQVMEAGTGEEAIALVEQSVPDYCTMDINMPGML 67
           KT+L+VDDS+V+RM+ +  +    P WQV+EA TGEEA+ +  + +PD+  MD+NMPGM 
Sbjct: 46  KTVLLVDDSRVARMMTRKMIETDRPGWQVVEAATGEEALEVYSRVLPDFVIMDVNMPGMG 105

Query: 68  GTDAAAQILQAHPSVRIAIFSANIQEAVQTRAQQLGALFVAKPV 111
           G +A  ++   +P   + + +ANIQ+ V+ +A+++G  F++KPV
Sbjct: 106 GLEATKRLKAVYPQAVVTLLTANIQDPVREQAEEMGVGFMSKPV 149