BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2376.p         (71 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775376.1| hypothetical protein Hsero_1964 [Herbaspiril...   126   8e-28
ref|YP_004693452.1| hypothetical protein Nit79A3_0146 [Nitrosomo...    89   3e-16
ref|YP_411957.1| hypothetical protein Nmul_A1262 [Nitrosospira m...    88   3e-16
ref|ZP_03698260.1| protein of unknown function DUF466 [Lutiella ...    86   2e-15
ref|YP_003760279.1| hypothetical protein Nwat_1016 [Nitrosococcu...    85   3e-15

>ref|YP_003775376.1| hypothetical protein Hsero_1964 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63468.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 71

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 63/71 (88%), Positives = 67/71 (94%)

Query: 1  MSKPGALAQLMAWRRQVGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEAR 60
          MSKPGALAQL+AWRRQVGRTLNLMVGMPEYD YVAHM+ +HPD  VM+YEEFFRERQEAR
Sbjct: 1  MSKPGALAQLLAWRRQVGRTLNLMVGMPEYDNYVAHMQKSHPDQRVMSYEEFFRERQEAR 60

Query: 61 YGGKGRVGRCC 71
          YGGKGRVGRCC
Sbjct: 61 YGGKGRVGRCC 71


>ref|YP_004693452.1| hypothetical protein Nit79A3_0146 [Nitrosomonas sp. Is79A3]
 gb|AEJ00053.1| protein of unknown function DUF466 [Nitrosomonas sp. Is79A3]
          Length = 66

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/57 (73%), Positives = 48/57 (84%)

Query: 15 RQVGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEARYGGKGRVGRCC 71
          RQ+ ++L LMVG+PEY TYV HMK AHPD  VM+YEEFFRERQEARYG KGR+ RCC
Sbjct: 10 RQLSQSLRLMVGVPEYSTYVDHMKIAHPDRPVMSYEEFFRERQEARYGSKGRLNRCC 66


>ref|YP_411957.1| hypothetical protein Nmul_A1262 [Nitrosospira multiformis ATCC
          25196]
 gb|ABB74565.1| Protein of unknown function DUF466 [Nitrosospira multiformis ATCC
          25196]
          Length = 83

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 51/65 (78%)

Query: 7  LAQLMAWRRQVGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEARYGGKGR 66
          L ++ +  R +G+ + LMVGMPEY TYVAHM  AHPD  VMTYEEFFRERQEARYGG G+
Sbjct: 19 LTRIASGLRYLGQGMRLMVGMPEYSTYVAHMHRAHPDRPVMTYEEFFRERQEARYGGNGK 78

Query: 67 VGRCC 71
          V RCC
Sbjct: 79 VTRCC 83


>ref|ZP_03698260.1| protein of unknown function DUF466 [Lutiella nitroferrum 2002]
 ref|YP_004846757.1| hypothetical protein NH8B_1521 [Pseudogulbenkiania sp. NH8B]
 gb|EEG09002.1| protein of unknown function DUF466 [Lutiella nitroferrum 2002]
 dbj|BAK76343.1| protein of unknown function [Pseudogulbenkiania sp. NH8B]
          Length = 67

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 9  QLMAWRRQVGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEARY-GGKGRV 67
          QL    + +G+  NLMVG+P+YDTYV HM+  HPD   MTYEEFFRERQ+ARY GG G+V
Sbjct: 4  QLGKLGKYLGQAANLMVGLPDYDTYVEHMRTTHPDQTPMTYEEFFRERQDARYGGGSGKV 63

Query: 68 GRCC 71
          GRCC
Sbjct: 64 GRCC 67


>ref|YP_003760279.1| hypothetical protein Nwat_1016 [Nitrosococcus watsonii C-113]
 gb|ADJ27958.1| protein of unknown function DUF466 [Nitrosococcus watsonii C-113]
          Length = 66

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 17 VGRTLNLMVGMPEYDTYVAHMKAAHPDHCVMTYEEFFRERQEARYGGKGRVGRCC 71
          +G+++ LMVGMP+Y  Y+ HM+  HPD  VMTY+EFFRERQEARYGG G++GRCC
Sbjct: 12 LGQSMRLMVGMPDYGAYLTHMREVHPDQPVMTYDEFFRERQEARYGGNGKIGRCC 66