BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2374.p (463 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775374.1| transmembrane sensor histidine kinase transc... 744 0.0 ref|YP_004754932.1| sensor histidine kinase [Collimonas fungivor... 575 e-162 ref|ZP_08274167.1| Sensor histidine kinase [Oxalobacteraceae bac... 492 e-137 ref|YP_001020224.1| putative transmembrane sensor histidine kina... 450 e-124 ref|YP_297620.1| sensor histidine kinase [Ralstonia eutropha JMP... 441 e-122 >ref|YP_003775374.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63466.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 464 Score = 744 bits (1921), Expect = 0.0, Method: Composition-based stats. Identities = 408/458 (89%), Positives = 430/458 (93%), Gaps = 1/458 (0%) Query: 1 MKLRQKIIFLAIVPLCLAFAAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 MKLRQKIIFLAIVPLCLAF AIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA Sbjct: 1 MKLRQKIIFLAIVPLCLAFTAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 Query: 61 QHALAHLYDTGRTDDAIKEEARRILSDLAFGDDGYFFVYDDQGRSIMHPRQPELVGREMW 120 QHALAHLYDTGRTDDAIKEEAR +L+DL FGDDGYFFVYDD GRSIMHPRQPELVG EMW Sbjct: 61 QHALAHLYDTGRTDDAIKEEARHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEMW 120 Query: 121 DWRDDSGSPTIQHLIERAHQGGGFERYLWRKPSSKTVAPKLGYVIALPRWGWVIGTGIYL 180 +WRD SGS TIQHLIERA QGGG+ERYLWRKPSSKTVAPKLGYVI+LPRWGWVIGTGIYL Sbjct: 121 NWRDASGSFTIQHLIERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIYL 180 Query: 181 DDVEAALAQVDHQNSGYLHQTMLLIAIIALSSALAVGLAGLLLNLSEHRVADAKLRQLAQ 240 DDVEAALAQ+D QNSGYLHQT+LLIA IAL+SALAVGLAGLLLNLSEHRVADAKLRQLAQ Sbjct: 181 DDVEAALAQIDRQNSGYLHQTLLLIASIALASALAVGLAGLLLNLSEHRVADAKLRQLAQ 240 Query: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEASLERLRGTPEQAAAARAGFEKTATQI 300 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEA+L RL GTPEQAA ARAGFEKTATQI Sbjct: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATARAGFEKTATQI 300 Query: 301 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRESS-PQTQIVFEHERQRKDGAALS 359 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWR+++ +IVFE++ Q DGA L Sbjct: 301 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQAQADDGATLP 360 Query: 360 DVVNTVLFRVAQEALTNIARHANASQIRMRLYDGHNLLMLQVQDNGSGFDPGQVDDHSRH 419 DVVNTVLFR+AQEALTNIARHA AS+I++RLY GHNLLMLQVQDNG GFD GQVDDHSRH Sbjct: 361 DVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFDLGQVDDHSRH 420 Query: 420 GIGLRNMRERMEAVGGELGIDSSAAGTSISAIIPRSSL 457 GIGLRNMRER+EAVGGELGIDSS AGTSISA+I R+SL Sbjct: 421 GIGLRNMRERIEAVGGELGIDSSPAGTSISAVIARASL 458 >ref|YP_004754932.1| sensor histidine kinase [Collimonas fungivorans Ter331] gb|AEK64109.1| Sensor histidine kinase [Collimonas fungivorans Ter331] Length = 456 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 303/453 (66%), Positives = 357/453 (78%), Gaps = 4/453 (0%) Query: 1 MKLRQKIIFLAIVPLCLAFAAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 MKLRQKIIFLAIVPL LA AIAL VR+QA+ L QQR ++AAYLASK EL+HYV+LA Sbjct: 1 MKLRQKIIFLAIVPLILALCAIALAVRHQAIALGQQQRTTIQAAYLASKEAELKHYVELA 60 Query: 61 QHALAHLYDTGRTDDAIKEEARRILSDLAFGDDGYFFVYDDQGRSIMHPRQPELVGREMW 120 ++AHLYD+GR D A +EA ILS L++GDDGYFF+YD QG+S+MHPRQPELVGR++W Sbjct: 61 TWSIAHLYDSGRKDQATLDEAMAILSKLSYGDDGYFFIYDMQGKSLMHPRQPELVGRDLW 120 Query: 121 DWRDDSGSPTIQHLIERAHQGGGFERYLWRKPSSKTVAPKLGYVIALPRWGWVIGTGIYL 180 D +D G+ TIQHLIERA GGGFERY W KPSS VA KLGYV+ALP WGW++GTGIY+ Sbjct: 121 DMKDAEGNLTIQHLIERARSGGGFERYQWEKPSSHHVASKLGYVVALPNWGWMLGTGIYM 180 Query: 181 DDVEAALAQVDHQNSGYLHQTMLLIAIIALSSALAVGLAGLLLNLSEHRVADAKLRQLAQ 240 DDV+AAL+++D Q SG + TM IA IA+ SAL VG +GL+LN+SEHRVADAKL+ LAQ Sbjct: 181 DDVDAALSKIDTQVSGNIRNTMWWIAGIAILSALVVGASGLVLNISEHRVADAKLKVLAQ 240 Query: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEASLERLRGTPEQAAAARAGFEKTATQI 300 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEA + +L P+Q AAARA FE+TA Q+ Sbjct: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAGIAKLDNGPQQTAAARATFERTAGQL 300 Query: 301 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRESSPQTQIVFEHERQRKDGAALSD 360 N VL EVRRISHDLRPAILDDLGLAAAL HL EW E + I F+H DG + Sbjct: 301 NDVLGEVRRISHDLRPAILDDLGLAAALSHLTREWLEHA-GIPIDFQHS-GNTDG--MPA 356 Query: 361 VVNTVLFRVAQEALTNIARHANASQIRMRLYDGHNLLMLQVQDNGSGFDPGQVDDHSRHG 420 V NTVLFR+AQEALTNIARH+ A+QI +RL + L V DNG GFD Q+D + +HG Sbjct: 357 VANTVLFRIAQEALTNIARHSQATQIEIRLQGDAQAITLAVHDNGVGFDVDQIDGNPKHG 416 Query: 421 IGLRNMRERMEAVGGELGIDSSAAGTSISAIIP 453 IGLRNM ER+EAVGG+L I SSAAGT++ A +P Sbjct: 417 IGLRNMVERLEAVGGQLKISSSAAGTTVLATVP 449 >ref|ZP_08274167.1| Sensor histidine kinase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32364.1| Sensor histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 451 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 268/453 (59%), Positives = 333/453 (73%), Gaps = 4/453 (0%) Query: 1 MKLRQKIIFLAIVPLCLAFAAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 M LR KI LA+VPL A AIAL V+YQ+ LA QQR +VE+AYL+SK E+RHYV LA Sbjct: 1 MNLRHKIFLLAVVPLIAALCAIALAVQYQSALLAQQQRNSVESAYLSSKEAEMRHYVTLA 60 Query: 61 QHALAHLYDTGRTDDAIKEEARRILSDLAFGDDGYFFVYDDQGRSIMHPRQPELVGREMW 120 ++ +YD+GR D +EA++I+S+L +GDDGYFFVYD QG +++HPRQPELVGR +W Sbjct: 61 TRSIKEIYDSGRQDTQALDEAKQIISNLDYGDDGYFFVYDMQGVNLVHPRQPELVGRNLW 120 Query: 121 DWRDDSGSPTIQHLIERAHQGGGFERYLWRKPSSKTVAPKLGYVIALPRWGWVIGTGIYL 180 + RD G+PTIQ LI RA GGG ERYLW KPS++ V PKLGYVI+LPRWGWVIGTGIYL Sbjct: 121 ELRDIKGNPTIQRLIFRASHGGGLERYLWEKPSTRKVVPKLGYVISLPRWGWVIGTGIYL 180 Query: 181 DDVEAALAQVDHQNSGYLHQTMLLIAIIALSSALAVGLAGLLLNLSEHRVADAKLRQLAQ 240 DDV+A + ++D Q S + TML I IA++S LA+ L GL LN SEHRVADAKLR LAQ Sbjct: 181 DDVDAVVNKIDGQISHNIQSTMLWITGIAIASVLAIALFGLALNFSEHRVADAKLRVLAQ 240 Query: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEASLERLRGTPEQAAAARAGFEKTATQI 300 RVV SQEEERARLSRDLHDGISQWLVSIKLQ+E+ + +L G+ QA +AR F++ ATQ+ Sbjct: 241 RVVHSQEEERARLSRDLHDGISQWLVSIKLQVESGIAKLAGSHAQADSARHSFDRAATQL 300 Query: 301 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRESSPQTQIVFEHERQRKDGAALSD 360 N VL EVRRISHDLRPA+LDDLGLAAALE+L E+ + + I + ++ LS Sbjct: 301 NDVLGEVRRISHDLRPALLDDLGLAAALEYLTREFADHA-GLDISLSVDGPIEN---LSA 356 Query: 361 VVNTVLFRVAQEALTNIARHANASQIRMRLYDGHNLLMLQVQDNGSGFDPGQVDDHSRHG 420 V TVLFR+AQEALTNI RHA+A+ + + L + + + DNG GFD V + + G Sbjct: 357 VRKTVLFRIAQEALTNIERHAHATNVCLTLSGDTATVRMAISDNGKGFDMPLVAESPKRG 416 Query: 421 IGLRNMRERMEAVGGELGIDSSAAGTSISAIIP 453 IGLRNM ER EAV G+L + SSA GT + I+P Sbjct: 417 IGLRNMHERAEAVDGKLILTSSAEGTQLITILP 449 >ref|YP_001020224.1| putative transmembrane sensor histidine kinase transcription regulator protein [Methylibium petroleiphilum PM1] gb|ABM93989.1| putative transmembrane sensor histidine kinase transcription regulator protein [Methylibium petroleiphilum PM1] Length = 456 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 248/457 (54%), Positives = 320/457 (70%), Gaps = 7/457 (1%) Query: 1 MKLRQKIIFLAIVPLCLAFAAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 M+L+ KI+ LA+VPL + IAL VR+Q LA+++R VE+AY++SK TELRHYV+LA Sbjct: 1 MRLKSKIVLLAVVPLLASIVLIALAVRHQERALAARERELVESAYMSSKRTELRHYVELA 60 Query: 61 QHALAHLYDTGRTDDAIKEEARRILSDLAFGDDGYFFVYDDQGRSIMHPRQPELVGREMW 120 + +A LYD+G +A ++ A ++L+ L +G DGYFF+YD QGRS+MHPRQPELVG ++W Sbjct: 61 RSTIAPLYDSGDDSEATRQAAMKLLASLDYGTDGYFFLYDLQGRSLMHPRQPELVGNDLW 120 Query: 121 DWRDDSGSPTIQHLIERAHQGGGFERYLWRKPSSKTVAPKLGYVIALPRWGWVIGTGIYL 180 + RD++G PTIQ LI +A +GGGF YLWRKPS++ PKLGYVIALPRW W++GTG+YL Sbjct: 121 ELRDEAGHPTIQQLIAKASEGGGFIDYLWRKPSTRQTTPKLGYVIALPRWNWMLGTGLYL 180 Query: 181 DDVEAALAQVDHQNSGYLHQTMLLIAIIALSSALAVGLAGLLLNLSEHRVADAKLRQLAQ 240 DDV+A +AQ+DHQ + + T L IA IALS + + GL LNLSEH+ ADAKLRQLAQ Sbjct: 181 DDVQATMAQLDHQVAANIETTFLWIAGIALSGIALITVCGLALNLSEHKEADAKLRQLAQ 240 Query: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEASLERLRGTPEQAAAARAGFEKTATQI 300 +VV+SQE ERA LSR+LHDG SQ LVSIKL IE+++E++ P QAA E+ A ++ Sbjct: 241 QVVQSQESERAHLSRELHDGTSQTLVSIKLLIESAIEQIEREPAQAAVP---LERAAVRL 297 Query: 301 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRESSPQTQIVFEHERQRKDGAALSD 360 L EVRRISH LRPA+LD LGL AALEHL RE + + F R R L D Sbjct: 298 ADALTEVRRISHRLRPAMLDVLGLPAALEHL---GREFGDHSGLAFSM-RMRGPSIELPD 353 Query: 361 VVNTVLFRVAQEALTNIARHANASQIRMRLYDGHNLLMLQVQDNGSGFDPGQVDDHSRHG 420 V TVLFRV QEALTNI +HA A +R+RL + L L + D+G GFD V R G Sbjct: 354 DVKTVLFRVTQEALTNIEKHAAAQSVRIRLAFRPSGLRLAILDDGRGFDLAAVQLDPRRG 413 Query: 421 IGLRNMRERMEAVGGELGIDSSAAGTSISAIIPRSSL 457 IGLRNMRER+ ++GG I S + T + A +P + L Sbjct: 414 IGLRNMRERLASIGGSFRIRSRSGLTELIADVPEAQL 450 >ref|YP_297620.1| sensor histidine kinase [Ralstonia eutropha JMP134] gb|AAZ62776.1| ATP-binding region, ATPase-like:Histidine kinase, dimerization and phosphoacceptor region [Ralstonia eutropha JMP134] Length = 481 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 245/453 (54%), Positives = 315/453 (69%), Gaps = 4/453 (0%) Query: 1 MKLRQKIIFLAIVPLCLAFAAIALVVRYQAVELASQQRAAVEAAYLASKNTELRHYVDLA 60 MKLRQKI+ LA+ PL +A IAL VR+QA +LA +RA VEAAY+ SK TELRHYV+LA Sbjct: 14 MKLRQKILLLAVAPLAVAMLGIALAVRFQATQLARHERALVEAAYIQSKETELRHYVELA 73 Query: 61 QHALAHLYDTGRTDDAIKEEARRILSDLAFGDDGYFFVYDDQGRSIMHPRQPELVGREMW 120 Q A+A + +G TD A ++ A L+ L +G DGYFF+YD QGR++MHPRQPELVG+++W Sbjct: 74 QSAIAPMVRSGHTDAATRQAAMEALARLDYGPDGYFFLYDMQGRNLMHPRQPELVGQDLW 133 Query: 121 DWRDDSGSPTIQHLIERAHQGGGFERYLWRKPSSKTVAPKLGYVIALPRWGWVIGTGIYL 180 RD G+ TIQ LI A GGG RYLW+KPSS+ +APKLGYV+A+P WGW++GTGIYL Sbjct: 134 TLRDPQGALTIQKLIAAAKAGGGSVRYLWKKPSSQQLAPKLGYVVAVPEWGWMLGTGIYL 193 Query: 181 DDVEAALAQVDHQNSGYLHQTMLLIAIIALSSALAVGLAGLLLNLSEHRVADAKLRQLAQ 240 DDVE L Q+D + + +TM I +IA S L V +GL LN+SEHR ADAKLRQLAQ Sbjct: 194 DDVENTLRQLDARAETDIRETMAWIGVIAAVSILLVAASGLALNISEHREADAKLRQLAQ 253 Query: 241 RVVRSQEEERARLSRDLHDGISQWLVSIKLQIEASLERLRGTPEQAAAARAGFEKTATQI 300 RVV+SQEEERARLSR+LHDGISQ LVS+KL +EA+ RLR P + AA ++ Sbjct: 254 RVVQSQEEERARLSRELHDGISQLLVSVKLVLEAAANRLRLAPAEGAAVAPVLGMALNRL 313 Query: 301 NGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRESSPQTQIVFEHERQRKDGAALSD 360 + V EVRR++ +LRPA+LDDLG+ AAL+HL E + S Q +I QR L D Sbjct: 314 DTVFNEVRRVARNLRPALLDDLGIFAALQHLAREMQGGS-QLEITVA---QRGAPRELPD 369 Query: 361 VVNTVLFRVAQEALTNIARHANASQIRMRLYDGHNLLMLQVQDNGSGFDPGQVDDHSRHG 420 T L+R+AQEALTN+ RHA A Q+ + L + L V+D+G GFD ++ + G Sbjct: 370 EQATALYRIAQEALTNVERHAGARQVTVALVFDPDATSLTVRDDGRGFDVARMQLDPQRG 429 Query: 421 IGLRNMRERMEAVGGELGIDSSAAGTSISAIIP 453 IGLRN+RER+ A+GG+ GI S GT + A +P Sbjct: 430 IGLRNLRERIAALGGQFGIVSGIGGTELVATLP 462