BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2373.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775373.1| LuxR family response regulator protein [Herb... 342 5e-92 ref|YP_004754933.1| two component LuxR family transcriptional re... 302 4e-80 ref|XP_002540217.1| Transcriptional regulatory protein uhpA, put... 293 2e-77 gb|EGP43331.1| response regulator 7 [Achromobacter xylosoxidans ... 229 3e-58 gb|EFV84550.1| DNA-binding response regulator [Achromobacter xyl... 228 5e-58 >ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63465.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 342 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 192/201 (95%), Positives = 194/201 (96%) Query: 58 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGNAEEALAAAARHPIDLTLMDINMRGINGI 117 IMLIDDHPLVRDGLRARLETVPGLEVVAEAG+A+EALAAAA IDLTLMDINMRGINGI Sbjct: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 Query: 118 ELTARFHALHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 177 ELTA FHA HPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI Sbjct: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 133 Query: 178 YYSAALARQLTQPLPVRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNIKR 237 YYSAALARQLTQPLP RELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNIKR Sbjct: 134 YYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNIKR 193 Query: 238 KLNIDGQAELIKFAVESRGAG 258 KLNIDGQAELIKFAVESR AG Sbjct: 194 KLNIDGQAELIKFAVESRSAG 214 >ref|YP_004754933.1| two component LuxR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK64110.1| two component transcriptional regulator, LuxR family [Collimonas fungivorans Ter331] Length = 212 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 156/205 (76%), Positives = 177/205 (86%), Gaps = 5/205 (2%) Query: 55 TTRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGNAEEALAAAARHPIDLTLMDINMR-- 112 TT+IML+DDHPLVRDGLRARLE VPG +VAEAG+A+EAL A IDL LMDIN+R Sbjct: 5 TTKIMLVDDHPLVRDGLRARLEAVPGFAIVAEAGSADEALQRAGEQAIDLVLMDINLRSN 64 Query: 113 ---GINGIELTARFHALHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAI 169 G NGI+LTA+FH PEIAVLILSMHDK EY+MQS+QAGARGYVLKDAP +DIVHAI Sbjct: 65 CNGGCNGIDLTAQFHVSFPEIAVLILSMHDKTEYLMQSVQAGARGYVLKDAPGKDIVHAI 124 Query: 170 ETVRSGGIYYSAALARQLTQPLPVRELLTQREREVLMHIANGESNKQIARELDLSVRTVE 229 ETV SGG+YYSAALA++L +P+ +LLT RER+VL HIANGESNKQIARELDLSVRTVE Sbjct: 125 ETVISGGMYYSAALAQKLARPMTPGQLLTARERQVLQHIANGESNKQIARELDLSVRTVE 184 Query: 230 THRLNIKRKLNIDGQAELIKFAVES 254 THRLNIKRKL+I+GQAELIKFAVE+ Sbjct: 185 THRLNIKRKLDIEGQAELIKFAVEN 209 >ref|XP_002540217.1| Transcriptional regulatory protein uhpA, putative [Ricinus communis] gb|EEF22167.1| Transcriptional regulatory protein uhpA, putative [Ricinus communis] Length = 179 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 166/176 (94%), Positives = 168/176 (95%) Query: 83 VVAEAGNAEEALAAAARHPIDLTLMDINMRGINGIELTARFHALHPEIAVLILSMHDKAE 142 VVAEAG+A+EALAAAA IDLTLMDINMRGINGIELTA FHA HPEIAVLILSMHDKAE Sbjct: 1 VVAEAGHADEALAAAAAQEIDLTLMDINMRGINGIELTALFHARHPEIAVLILSMHDKAE 60 Query: 143 YVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGIYYSAALARQLTQPLPVRELLTQRER 202 YVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGIYYSAALARQLTQPLP RELLTQRER Sbjct: 61 YVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGIYYSAALARQLTQPLPPRELLTQRER 120 Query: 203 EVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVESRGAG 258 EVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVESR G Sbjct: 121 EVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVESRSVG 176 >gb|EGP43331.1| response regulator 7 [Achromobacter xylosoxidans AXX-A] Length = 218 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 134/222 (60%), Positives = 170/222 (76%), Gaps = 14/222 (6%) Query: 44 MSDTAPPIAPATTRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGNAEEALAAAARHPID 103 M+D++ PI R++LIDDHPLVRDGLR RLETVP L+VV EAGNA ALA + Sbjct: 1 MTDSSSPI-----RLLLIDDHPLVRDGLRLRLETVPHLQVVGEAGNAAAALAFLQACLAE 55 Query: 104 ---------LTLMDINMRGINGIELTARFHALHPEIAVLILSMHDKAEYVMQSIQAGARG 154 L LMD+NM G+ G+ELTA+ H +P+IAVL+LSMHD AEY++Q+++AGARG Sbjct: 56 DPQGGTLPQLALMDLNMPGVGGLELTAQLHERYPQIAVLVLSMHDNAEYMVQAVRAGARG 115 Query: 155 YVLKDAPSQDIVHAIETVRSGGIYYSAALARQLTQPLPVRELLTQREREVLMHIANGESN 214 Y+LKD P+Q+I+ AI+ V +G Y+SAA++ +L+Q LLTQRER+VL HIA+G +N Sbjct: 116 YLLKDEPAQEILAAIDAVMTGRTYFSAAVSLRLSQASAPATLLTQRERDVLRHIASGHAN 175 Query: 215 KQIARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVESRG 256 KQIA+ L LSVRTVETHRLNIKRKL IDGQAELIK+AVE+RG Sbjct: 176 KQIAQALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVENRG 217 >gb|EFV84550.1| DNA-binding response regulator [Achromobacter xylosoxidans C54] Length = 218 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 134/222 (60%), Positives = 168/222 (75%), Gaps = 14/222 (6%) Query: 44 MSDTAPPIAPATTRIMLIDDHPLVRDGLRARLETVPGLEVVAEAGNAEEALAAAARHPID 103 M+D PI R++LIDDHPLVRDGLR RLETVP L+VV EAGNA ALA + Sbjct: 1 MTDPGSPI-----RLLLIDDHPLVRDGLRLRLETVPHLQVVGEAGNAAAALAFLQACLAE 55 Query: 104 ---------LTLMDINMRGINGIELTARFHALHPEIAVLILSMHDKAEYVMQSIQAGARG 154 L LMD+NM G+ G+ELTA+ H +P+IAVL+LSMHD AEY++Q+++AGARG Sbjct: 56 DPLGGTLPQLVLMDLNMPGVGGLELTAQLHERYPQIAVLVLSMHDNAEYMVQAVRAGARG 115 Query: 155 YVLKDAPSQDIVHAIETVRSGGIYYSAALARQLTQPLPVRELLTQREREVLMHIANGESN 214 Y+LKD P+Q+I+ AI+ V +G Y+SAA++ +L+Q LLTQRER+VL HIA+G +N Sbjct: 116 YLLKDEPAQEILAAIDAVMTGRTYFSAAVSLRLSQASAPATLLTQRERDVLRHIASGHAN 175 Query: 215 KQIARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVESRG 256 KQIA+ L LSVRTVETHRLNIKRKL IDGQAELIK+AVE+RG Sbjct: 176 KQIAQALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVENRG 217