BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2369.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775369.1| chemotaxis signal transduction protein [Herb... 559 e-157 ref|YP_003259227.1| response regulator receiver modulated CheW p... 463 e-128 ref|YP_003017031.1| response regulator receiver modulated CheW p... 459 e-127 ref|ZP_03828209.1| putative chemotaxis signal transduction prote... 459 e-127 ref|ZP_03831362.1| putative chemotaxis signal transduction prote... 459 e-127 >ref|YP_003775369.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ63461.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 284/319 (89%), Positives = 302/319 (94%) Query: 24 MDNFQKEIDERTNLTASNKFELLLFRLGADPHGERSELFGINVFKIREIVPMPPVTKAAG 83 MDNFQKEIDERTNLTASNKFELLLFRLG DPHGERSELFGINVFKIREIVPMPPVTKAAG Sbjct: 1 MDNFQKEIDERTNLTASNKFELLLFRLGTDPHGERSELFGINVFKIREIVPMPPVTKAAG 60 Query: 84 THSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 143 T SPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE Sbjct: 61 TQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 120 Query: 144 WSQVLSAETSSGGAFVTSIARLDQDKDTSRLAQVLDVEQILHEIMPSDRNMKMENLEKSA 203 WSQVLSAETSSGGAFVTSIARLD DKDTSRLAQVLDVEQILHEIMP+DR++KME+LEKSA Sbjct: 121 WSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLEKSA 180 Query: 204 GHGMRPGAVAIAADDSKVARSLIEQGLRAMEIPFEMHVTGKDAWDKIQKLAKEARAEGKP 263 HG+RPG VAIAADDSKVARSLIEQGLRAMEIP+EMHVTGK+AW+KIQKLA+EARAEG+P Sbjct: 181 SHGIRPGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREARAEGRP 240 Query: 264 ISDKISFVLTDLEMPEMDGFTLTRNIKREDGLKAIPVVIHSSLSGSANEEHVKNIGADGY 323 ISDKISFVLTDLEMPEMDGFTLTRNIKRED LK+IPV+IHSSLSGSANE+HV+++G D Y Sbjct: 241 ISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSVGGDAY 300 Query: 324 VAKFVIEDLTAALIKALGK 342 VAKF +L A + L K Sbjct: 301 VAKFEANELAATIYGVLDK 319 >ref|YP_003259227.1| response regulator receiver modulated CheW protein [Pectobacterium wasabiae WPP163] gb|ACX87620.1| response regulator receiver modulated CheW protein [Pectobacterium wasabiae WPP163] Length = 321 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 234/319 (73%), Positives = 275/319 (86%), Gaps = 1/319 (0%) Query: 24 MDNFQKEIDERTNLTASNKFELLLFRLGADPHGERSELFGINVFKIREIVPMPPVTKAAG 83 MDNFQKEIDERTNLTA+N+FELLLF+LG P G +SELFGINVFK+REIVPMP +TKAAG Sbjct: 1 MDNFQKEIDERTNLTAANRFELLLFQLGKSPEGGKSELFGINVFKLREIVPMPTLTKAAG 60 Query: 84 THSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 143 SPMLGMVNIRGQII VIDLPAVVG P+TGLNILL+TEYARSTQAFAVESVD+IVRLE Sbjct: 61 MKSPMLGMVNIRGQIIPVIDLPAVVGSAPETGLNILLITEYARSTQAFAVESVDDIVRLE 120 Query: 144 WSQVLSAETSSGGAFVTSIARLDQDKDTSRLAQVLDVEQILHEIMPSDRNMKMENLEKSA 203 WSQVL+AE +++TSIARLD DKD++RLA VLDVEQIL +I+P DR K++N E+ Sbjct: 121 WSQVLAAEAGVSSSYITSIARLDSDKDSNRLALVLDVEQILFDIIPGDRETKLKNAEEKV 180 Query: 204 GHGMRPGAVAIAADDSKVARSLIEQGLRAMEIPFEMHVTGKDAWDKIQKLAKEARAEGKP 263 + PGA+AI A+DSKVARSL+EQGL M IPF MH+TG+DAW+KI+++A+EA++EG+P Sbjct: 181 -YPYTPGAIAIVAEDSKVARSLLEQGLTQMGIPFSMHITGQDAWNKIRQIAQEAQSEGRP 239 Query: 264 ISDKISFVLTDLEMPEMDGFTLTRNIKREDGLKAIPVVIHSSLSGSANEEHVKNIGADGY 323 ISDKIS VLTDLEMPEMDGFTLTRNIKRE+ LK IPVVIHSSLSGSANE+HV+N+GAD Y Sbjct: 240 ISDKISLVLTDLEMPEMDGFTLTRNIKREEYLKNIPVVIHSSLSGSANEDHVRNVGADAY 299 Query: 324 VAKFVIEDLTAALIKALGK 342 VAKF I +L+ A+ L K Sbjct: 300 VAKFEINELSTAIQTVLSK 318 >ref|YP_003017031.1| response regulator receiver modulated CheW protein [Pectobacterium carotovorum subsp. carotovorum PC1] gb|ACT12495.1| response regulator receiver modulated CheW protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 321 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 233/319 (73%), Positives = 275/319 (86%), Gaps = 1/319 (0%) Query: 24 MDNFQKEIDERTNLTASNKFELLLFRLGADPHGERSELFGINVFKIREIVPMPPVTKAAG 83 MDNFQKEIDERTNLT++NKFELLLF+LG P G +SELFGINVFK+REIVPMP +TKAAG Sbjct: 1 MDNFQKEIDERTNLTSANKFELLLFQLGKSPEGGKSELFGINVFKLREIVPMPTLTKAAG 60 Query: 84 THSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 143 SPMLGMVNIRGQII VIDLPAVVG P TGLNILL+TEYARSTQAFAVESVD+IVRLE Sbjct: 61 MKSPMLGMVNIRGQIIPVIDLPAVVGSSPDTGLNILLITEYARSTQAFAVESVDDIVRLE 120 Query: 144 WSQVLSAETSSGGAFVTSIARLDQDKDTSRLAQVLDVEQILHEIMPSDRNMKMENLEKSA 203 WSQVL+AE +++TSIARLD DKD++RLA VLDVEQIL +I+P +R K++N E+ Sbjct: 121 WSQVLAAEAGVSSSYITSIARLDNDKDSNRLALVLDVEQILFDIIPGERETKLKNSEEKI 180 Query: 204 GHGMRPGAVAIAADDSKVARSLIEQGLRAMEIPFEMHVTGKDAWDKIQKLAKEARAEGKP 263 + PGA+AI A+DSKVARSL+EQGL M IPF MH+TG+DAW+KI+++A+EA++EG+P Sbjct: 181 -YPYTPGAIAIVAEDSKVARSLLEQGLTQMGIPFSMHITGQDAWNKIRQIAQEAQSEGRP 239 Query: 264 ISDKISFVLTDLEMPEMDGFTLTRNIKREDGLKAIPVVIHSSLSGSANEEHVKNIGADGY 323 ISDKIS VLTDLEMPEMDGFTLTRNIKRE+ LK IPVVIHSSLSGSANE+HV+N+GAD Y Sbjct: 240 ISDKISLVLTDLEMPEMDGFTLTRNIKREEFLKNIPVVIHSSLSGSANEDHVRNVGADAY 299 Query: 324 VAKFVIEDLTAALIKALGK 342 VAKF I +L++A+ L K Sbjct: 300 VAKFEINELSSAIQTVLNK 318 >ref|ZP_03828209.1| putative chemotaxis signal transduction protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 321 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 233/319 (73%), Positives = 275/319 (86%), Gaps = 1/319 (0%) Query: 24 MDNFQKEIDERTNLTASNKFELLLFRLGADPHGERSELFGINVFKIREIVPMPPVTKAAG 83 MDNFQKEIDERTNLT++NKFELLLF+LG P G +SELFGINVFK+REIVPMP +TKAAG Sbjct: 1 MDNFQKEIDERTNLTSANKFELLLFQLGKSPEGGKSELFGINVFKLREIVPMPTLTKAAG 60 Query: 84 THSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 143 SPMLGMVNIRGQII VIDLPAVVG +TGLNILL+TEYARSTQAFAVESVD+IVRLE Sbjct: 61 MKSPMLGMVNIRGQIIPVIDLPAVVGSSSETGLNILLITEYARSTQAFAVESVDDIVRLE 120 Query: 144 WSQVLSAETSSGGAFVTSIARLDQDKDTSRLAQVLDVEQILHEIMPSDRNMKMENLEKSA 203 WSQVL+AE +++TSIARLD DKD++RLA VLDVEQIL +I+P DR K++N E+ Sbjct: 121 WSQVLAAEAGVSSSYITSIARLDNDKDSNRLALVLDVEQILFDIIPGDRETKLKNAEEKI 180 Query: 204 GHGMRPGAVAIAADDSKVARSLIEQGLRAMEIPFEMHVTGKDAWDKIQKLAKEARAEGKP 263 + PGA+AI A+DSKVARSL+EQGL M IPF MH+TG+DAW+KI+++A+EA++EG+P Sbjct: 181 -YPYTPGAIAIVAEDSKVARSLLEQGLTQMGIPFSMHITGQDAWNKIRQIAQEAQSEGRP 239 Query: 264 ISDKISFVLTDLEMPEMDGFTLTRNIKREDGLKAIPVVIHSSLSGSANEEHVKNIGADGY 323 ISDKIS VLTDLEMPEMDGFTLTRNIKRE+ LK IPVVIHSSLSGSANE+HV+N+GAD Y Sbjct: 240 ISDKISLVLTDLEMPEMDGFTLTRNIKREEYLKNIPVVIHSSLSGSANEDHVRNVGADAY 299 Query: 324 VAKFVIEDLTAALIKALGK 342 VAKF I +L++A+ L K Sbjct: 300 VAKFEINELSSAIQTVLNK 318 >ref|ZP_03831362.1| putative chemotaxis signal transduction protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 323 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 233/319 (73%), Positives = 274/319 (85%), Gaps = 1/319 (0%) Query: 24 MDNFQKEIDERTNLTASNKFELLLFRLGADPHGERSELFGINVFKIREIVPMPPVTKAAG 83 MDNFQKEIDERTNLT++NKFELLLF+LG P G +SELFGINVFK+REIVPMP +TKAAG Sbjct: 1 MDNFQKEIDERTNLTSANKFELLLFQLGKSPEGGKSELFGINVFKLREIVPMPTLTKAAG 60 Query: 84 THSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 143 SPMLGMVNIRGQII VIDLPAVVG +TGLNILL+TEYARSTQAFAVESVD+IVRLE Sbjct: 61 MKSPMLGMVNIRGQIIPVIDLPAVVGSSSETGLNILLITEYARSTQAFAVESVDDIVRLE 120 Query: 144 WSQVLSAETSSGGAFVTSIARLDQDKDTSRLAQVLDVEQILHEIMPSDRNMKMENLEKSA 203 WSQVL+AE +++TSIARLD DKD++RLA VLDVEQIL +I+P DR K++N E+ Sbjct: 121 WSQVLAAEAGVSSSYITSIARLDNDKDSNRLALVLDVEQILFDIIPGDRETKLKNAEEKT 180 Query: 204 GHGMRPGAVAIAADDSKVARSLIEQGLRAMEIPFEMHVTGKDAWDKIQKLAKEARAEGKP 263 + PGA+AI A+DSKVARSL+EQGL M IPF MH+TG+DAW+KI+++A+EA++EG+P Sbjct: 181 -YPYTPGAIAIVAEDSKVARSLLEQGLTQMGIPFSMHITGQDAWNKIRQIAQEAQSEGRP 239 Query: 264 ISDKISFVLTDLEMPEMDGFTLTRNIKREDGLKAIPVVIHSSLSGSANEEHVKNIGADGY 323 ISDKIS VLTDLEMPEMDGFTLTRNIKRE+ LK IPVVIHSSLSGSANE+HV+N+GAD Y Sbjct: 240 ISDKISLVLTDLEMPEMDGFTLTRNIKREEFLKNIPVVIHSSLSGSANEDHVRNVGADAY 299 Query: 324 VAKFVIEDLTAALIKALGK 342 VAKF I +L+ A+ L K Sbjct: 300 VAKFEINELSTAIQTVLNK 318