BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2361.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775355.1| pyridoxal phosphate biosynthetic protein [He... 404 e-111 ref|YP_004753516.1| pyridoxine 5'-phosphate synthase [Collimonas... 369 e-100 ref|YP_001100325.1| pyridoxine 5'-phosphate synthase [Herminiimo... 360 1e-97 ref|ZP_02464227.1| pyridoxal phosphate biosynthetic protein PdxJ... 334 7e-90 ref|YP_442268.1| pyridoxine 5'-phosphate synthase [Burkholderia ... 334 8e-90 >ref|YP_003775355.1| pyridoxal phosphate biosynthetic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63447.1| pyridoxal phosphate biosynthetic protein [Herbaspirillum seropedicae SmR1] Length = 257 Score = 404 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 239/256 (93%), Positives = 249/256 (97%) Query: 1 MSFLQPAGPVIDLGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60 MSFLQPAGP I+LGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI Sbjct: 1 MSFLQPAGPAIELGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60 Query: 61 RDEDVKAIRPLLQTRMNLEAAVTKEMIDFACGIQPQDACLVPEKRTEVTTEGGLDVRGHF 120 RD+DVKAIRPLLQTRMNLEAAVT+EMIDFAC I+PQD CLVPEKRTEVTTEGGLDV GHF Sbjct: 61 RDDDVKAIRPLLQTRMNLEAAVTREMIDFACFIRPQDVCLVPEKRTEVTTEGGLDVVGHF 120 Query: 121 ADVQAAIRQLQQESIRVSLFIDPDVEQIQAAAESGAPVIELHTGRYADATSEREQQEELE 180 ADVQAAIRQLQQE IRVSLFID DV+QI+AAAESGAPVIELHTGRYADATSE+EQQEELE Sbjct: 121 ADVQAAIRQLQQEQIRVSLFIDADVQQIKAAAESGAPVIELHTGRYADATSEQEQQEELE 180 Query: 181 RIRIAVQAGVKLGLKVNAGHGLHYTNVQAIAAIPEIAELNIGHAVVAHAVFAGWRNAVSE 240 RIR+AVQ GVKLGLKVNAGHGLHYTNVQAIAAIPEIAELNIGHAVVAHAVFAGWRNAVSE Sbjct: 181 RIRLAVQEGVKLGLKVNAGHGLHYTNVQAIAAIPEIAELNIGHAVVAHAVFAGWRNAVSE 240 Query: 241 MKAIMVKARLDALKAK 256 MKAIM+KARL+ALKAK Sbjct: 241 MKAIMIKARLEALKAK 256 >ref|YP_004753516.1| pyridoxine 5'-phosphate synthase [Collimonas fungivorans Ter331] gb|AEK62693.1| Pyridoxine 5'-phosphate synthase [Collimonas fungivorans Ter331] Length = 253 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 195/251 (77%), Positives = 222/251 (88%) Query: 1 MSFLQPAGPVIDLGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60 MS+L P VIDLG+NIDHVATLRNARGT YPDP++AAL+AEEAGAD ITLHLREDRRHI Sbjct: 1 MSYLNPTSAVIDLGVNIDHVATLRNARGTTYPDPLQAALQAEEAGADVITLHLREDRRHI 60 Query: 61 RDEDVKAIRPLLQTRMNLEAAVTKEMIDFACGIQPQDACLVPEKRTEVTTEGGLDVRGHF 120 +D DV+ IRP L+TRMNLEAAVT+EMIDF+C I+P+D+CLVPE+R E+TTEGGLDV +F Sbjct: 61 KDADVEIIRPQLRTRMNLEAAVTQEMIDFSCKIKPEDSCLVPERRHELTTEGGLDVVKYF 120 Query: 121 ADVQAAIRQLQQESIRVSLFIDPDVEQIQAAAESGAPVIELHTGRYADATSEREQQEELE 180 VQAA+RQLQ E IRVSLFIDP+ +QIQAAAE GAPVIELHTGRYA+A E Q+ ELE Sbjct: 121 TQVQAAVRQLQAEGIRVSLFIDPEADQIQAAAEIGAPVIELHTGRYAEAHDEAGQRSELE 180 Query: 181 RIRIAVQAGVKLGLKVNAGHGLHYTNVQAIAAIPEIAELNIGHAVVAHAVFAGWRNAVSE 240 R++IAVQ GVK GLKVNAGHGLHYTN QAIAAIP+IAELNIGHA+VAHAVF GW+ AVSE Sbjct: 181 RVQIAVQEGVKRGLKVNAGHGLHYTNTQAIAAIPDIAELNIGHAIVAHAVFVGWKAAVSE 240 Query: 241 MKAIMVKARLD 251 MKA+MVKARLD Sbjct: 241 MKALMVKARLD 251 >ref|YP_001100325.1| pyridoxine 5'-phosphate synthase [Herminiimonas arsenicoxydans] emb|CAL62202.1| Pyridoxine 5'-phosphate synthase (PNP synthase) [Herminiimonas arsenicoxydans] Length = 255 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 196/250 (78%), Positives = 216/250 (86%) Query: 1 MSFLQPAGPVIDLGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60 MSFLQP +IDLGINIDHVATLRNARGT YP P++AAL+AEEAGADAITLHLREDRRHI Sbjct: 1 MSFLQPQSSIIDLGINIDHVATLRNARGTVYPYPLQAALQAEEAGADAITLHLREDRRHI 60 Query: 61 RDEDVKAIRPLLQTRMNLEAAVTKEMIDFACGIQPQDACLVPEKRTEVTTEGGLDVRGHF 120 RD DV+ IRP L+TRMNLE+AVT EMIDFAC I+PQD CLVPE+R EVTTEGGLD+ +F Sbjct: 61 RDADVELIRPQLRTRMNLESAVTSEMIDFACRIKPQDVCLVPERREEVTTEGGLDIVKYF 120 Query: 121 ADVQAAIRQLQQESIRVSLFIDPDVEQIQAAAESGAPVIELHTGRYADATSEREQQEELE 180 ++V AAIRQLQ E IRVSLFID DV QIQAAAE+GAPVIELHTGRYADA E QQ EL+ Sbjct: 121 SEVSAAIRQLQGEGIRVSLFIDADVAQIQAAAEAGAPVIELHTGRYADAHDEAGQQMELQ 180 Query: 181 RIRIAVQAGVKLGLKVNAGHGLHYTNVQAIAAIPEIAELNIGHAVVAHAVFAGWRNAVSE 240 R++ V GVK GLKVNAGHGLHYTNVQAIAAI +IAELNIGHA+VAHAVF GW+NAV E Sbjct: 181 RVKQGVHEGVKRGLKVNAGHGLHYTNVQAIAAIQDIAELNIGHAIVAHAVFVGWQNAVRE 240 Query: 241 MKAIMVKARL 250 MKAIM ARL Sbjct: 241 MKAIMTAARL 250 >ref|ZP_02464227.1| pyridoxal phosphate biosynthetic protein PdxJ [Burkholderia thailandensis MSMB43] Length = 257 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 188/253 (74%), Positives = 209/253 (82%) Query: 1 MSFLQPAGPVIDLGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60 MSF I+LG+NIDHVATLRNARGT YPDP+RAAL AE+AGADAITLHLREDRRHI Sbjct: 1 MSFFLTTPTAIELGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLREDRRHI 60 Query: 61 RDEDVKAIRPLLQTRMNLEAAVTKEMIDFACGIQPQDACLVPEKRTEVTTEGGLDVRGHF 120 D DV+ +RPL++TRMNLE AVT EM+D AC I+P DACLVPEKR+E+TTEGGLDV GHF Sbjct: 61 VDADVRTLRPLVKTRMNLECAVTPEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHF 120 Query: 121 ADVQAAIRQLQQESIRVSLFIDPDVEQIQAAAESGAPVIELHTGRYADATSEREQQEELE 180 V+AA +QL +RVSLFIDPD QI+AA E+GAPVIELHTGRYADA EQQ E E Sbjct: 121 DAVRAACKQLADAGVRVSLFIDPDDAQIRAAHETGAPVIELHTGRYADAHDAAEQQREFE 180 Query: 181 RIRIAVQAGVKLGLKVNAGHGLHYTNVQAIAAIPEIAELNIGHAVVAHAVFAGWRNAVSE 240 RI V AG+ LGLKVNAGHGLHYTNVQAIAA+P IAELNIGHA+VAHAVFAGW NAV E Sbjct: 181 RIATGVDAGIALGLKVNAGHGLHYTNVQAIAALPGIAELNIGHAIVAHAVFAGWDNAVRE 240 Query: 241 MKAIMVKARLDAL 253 MKAIMV AR+ AL Sbjct: 241 MKAIMVAARVAAL 253 >ref|YP_442268.1| pyridoxine 5'-phosphate synthase [Burkholderia thailandensis E264] ref|ZP_02387870.1| pyridoxal phosphate biosynthetic protein PdxJ [Burkholderia thailandensis Bt4] ref|ZP_05586723.1| pyridoxine 5'-phosphate synthase [Burkholderia thailandensis E264] gb|ABC39247.1| pyridoxal phosphate biosynthetic protein PdxJ [Burkholderia thailandensis E264] Length = 257 Score = 334 bits (857), Expect = 8e-90, Method: Composition-based stats. Identities = 187/253 (73%), Positives = 209/253 (82%) Query: 1 MSFLQPAGPVIDLGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60 MSF I+LG+NIDHVATLRNARGT YPDP+RAAL AE+AGADAITLHLREDRRHI Sbjct: 1 MSFFLTTPTAIELGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLREDRRHI 60 Query: 61 RDEDVKAIRPLLQTRMNLEAAVTKEMIDFACGIQPQDACLVPEKRTEVTTEGGLDVRGHF 120 D DV+ +RPL++TRMNLE AVT EM+D AC ++P DACLVPEKR+E+TTEGGLDV GHF Sbjct: 61 VDADVRTLRPLVKTRMNLECAVTPEMLDIACEVRPHDACLVPEKRSELTTEGGLDVVGHF 120 Query: 121 ADVQAAIRQLQQESIRVSLFIDPDVEQIQAAAESGAPVIELHTGRYADATSEREQQEELE 180 V+AA +QL +RVSLFIDPD QI+AA E+GAPVIELHTGRYADA EQQ E E Sbjct: 121 DAVRAACKQLADAGVRVSLFIDPDDAQIRAAHETGAPVIELHTGRYADAHDTAEQQREFE 180 Query: 181 RIRIAVQAGVKLGLKVNAGHGLHYTNVQAIAAIPEIAELNIGHAVVAHAVFAGWRNAVSE 240 RI V AG+ LGLKVNAGHGLHYTNVQAIAA+P IAELNIGHA+VAHAVFAGW NAV E Sbjct: 181 RIATGVDAGIALGLKVNAGHGLHYTNVQAIAALPGIAELNIGHAIVAHAVFAGWDNAVRE 240 Query: 241 MKAIMVKARLDAL 253 MKAIMV AR+ AL Sbjct: 241 MKAIMVAARVAAL 253