BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2360.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775354.1| DNA repair protein [Herbaspirillum seropedic... 498 e-139 ref|YP_001353062.1| DNA repair protein RecO [Janthinobacterium s... 380 e-103 ref|YP_001100326.1| DNA repair protein RecO [Herminiimonas arsen... 368 e-100 ref|YP_004753517.1| DNA recombination and repair protein [Collim... 360 1e-97 ref|ZP_08275733.1| DNA recombination and repair protein RecO [Ox... 353 2e-95 >ref|YP_003775354.1| DNA repair protein [Herbaspirillum seropedicae SmR1] gb|ADJ63446.1| DNA repair protein [Herbaspirillum seropedicae SmR1] Length = 286 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 263/288 (91%), Positives = 268/288 (93%), Gaps = 2/288 (0%) Query: 1 MTTMLNEPQLDAQLDGQAADPAVTPSVPQAPAKAPARKPATPRARSRAVPEKEHKVLAQP 60 MTTML E QLD+Q D A PQAPAK PARK A PRARSRAVPEKEHKVLAQP Sbjct: 1 MTTMLTESQLDSQADPANA--VAPAVAPQAPAKTPARKTAAPRARSRAVPEKEHKVLAQP 58 Query: 61 GFVLHSYPYKETSLIIDVFSRDHGRIALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEV 120 GFVLHSYPYKETSLIIDVFSRDHGR+ALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEV Sbjct: 59 GFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEV 118 Query: 121 RTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENA 180 RTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENA Sbjct: 119 RTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENA 178 Query: 181 PIVLRQFERILLKQTGVAGNWSHCVASGKAVQPDGIYVVDPEQGTRPERISDRAPKVSGK 240 PIVLRQFERILLKQTGVAGNWSHCV SGK V+PD IYVVDPEQGTRPER+SDRAPKVSGK Sbjct: 179 PIVLRQFERILLKQTGVAGNWSHCVVSGKTVRPDLIYVVDPEQGTRPERLSDRAPKVSGK 238 Query: 241 TLLDMEREDYSDPTTQLQSKFLMRYLLSHHLGGAQLNTRQILIDLMQL 288 TLLDMEREDYSDPTTQLQSKFLMRYLL+HHLGGAQLNTRQILIDLMQL Sbjct: 239 TLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 286 >ref|YP_001353062.1| DNA repair protein RecO [Janthinobacterium sp. Marseille] gb|ABR88659.1| RecO DNA repair protein [Janthinobacterium sp. Marseille] Length = 287 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 195/255 (76%), Positives = 218/255 (85%), Gaps = 3/255 (1%) Query: 34 APARKPATPRARSRAVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRIALVAKGA 93 A + K A RAR+ PEKE ++ QPGFVLHSYPYKETSLI+DVFSRDHGRIALVAKGA Sbjct: 36 AKSSKAAPRRART---PEKEFRIADQPGFVLHSYPYKETSLIVDVFSRDHGRIALVAKGA 92 Query: 94 KRPHSKLRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKL 153 KRPHSKLRG LQTFQPLS+ WSGK+EVRTLT AEWVGGLLPLEKSALLCGFYLNELLVKL Sbjct: 93 KRPHSKLRGVLQTFQPLSVGWSGKAEVRTLTAAEWVGGLLPLEKSALLCGFYLNELLVKL 152 Query: 154 LAREDAHPALFDHYVATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASGKAVQP 213 LAR+D HPALFDHYV+ LN+LAH E APIVLR+FER LLK+TGVA +W C ASGKA+ Sbjct: 153 LARDDPHPALFDHYVSALNQLAHDEPAPIVLRKFERALLKETGVASDWRVCTASGKAIVL 212 Query: 214 DGIYVVDPEQGTRPERISDRAPKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLSHHLGG 273 + IYV+DPE+G RP R +D P+VSGKTLLDME EDY+D TQ QSKFLMR+LL+HHL G Sbjct: 213 EQIYVLDPERGPRPARPADVWPRVSGKTLLDMENEDYTDTQTQTQSKFLMRFLLAHHLNG 272 Query: 274 AQLNTRQILIDLMQL 288 A LNTRQILIDL+QL Sbjct: 273 APLNTRQILIDLLQL 287 >ref|YP_001100326.1| DNA repair protein RecO [Herminiimonas arsenicoxydans] emb|CAL62203.1| DNA repair protein recO (Recombination protein O) [Herminiimonas arsenicoxydans] Length = 284 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 192/282 (68%), Positives = 222/282 (78%), Gaps = 14/282 (4%) Query: 7 EPQLDAQLDGQAADPAVTPSVPQAPAKAPARKPATPRARSRAVPEKEHKVLAQPGFVLHS 66 + QL + D AVTP AK R+P T EK+ ++ QPGFVLHS Sbjct: 17 DEQLASSGDAGLVQTAVTP------AKTTTRRPRTL--------EKDSRIAEQPGFVLHS 62 Query: 67 YPYKETSLIIDVFSRDHGRIALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRTLTDA 126 YPYKETSLI+DVF+RDHGRIALVAKGAKRPHSKLRG LQTFQPLS+SWSGK+EVRTLT A Sbjct: 63 YPYKETSLIVDVFTRDHGRIALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKAEVRTLTSA 122 Query: 127 EWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPIVLRQ 186 EWVGGLLPLEKSALLCGFYLNELLVKLLAR+D+HPALF+HYV+ LN+LAH E A IVLR+ Sbjct: 123 EWVGGLLPLEKSALLCGFYLNELLVKLLARDDSHPALFNHYVSALNQLAHDEPAAIVLRK 182 Query: 187 FERILLKQTGVAGNWSHCVASGKAVQPDGIYVVDPEQGTRPERISDRAPKVSGKTLLDME 246 FER LLK++GV+G+W C A+ + YVVDPE+G RP R +D P V+GKTLLDME Sbjct: 183 FERALLKESGVSGDWKICTATRNPLLGGINYVVDPERGPRPARPADTWPHVAGKTLLDME 242 Query: 247 REDYSDPTTQLQSKFLMRYLLSHHLGGAQLNTRQILIDLMQL 288 +EDYSD TQ+QSKFLMR+LL+HHL GA LNTRQILIDL+QL Sbjct: 243 KEDYSDAATQMQSKFLMRFLLAHHLNGAPLNTRQILIDLLQL 284 >ref|YP_004753517.1| DNA recombination and repair protein [Collimonas fungivorans Ter331] gb|AEK62694.1| DNA recombination and repair protein [Collimonas fungivorans Ter331] Length = 284 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 192/273 (70%), Positives = 217/273 (79%), Gaps = 3/273 (1%) Query: 16 GQAADPAVTPSVPQAPAKAPARKPATPRARSRAVPEKEHKVLAQPGFVLHSYPYKETSLI 75 G+ A P+ A + P+ R+R + + +V QPGFVLHSYP++ETSLI Sbjct: 15 GETAMPSSAAEEQLIAVIGGAAAASPPKRRARPL---DTRVTGQPGFVLHSYPHRETSLI 71 Query: 76 IDVFSRDHGRIALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGLLPL 135 IDVFSRD+GRIALVAKGAKRP SKLRG LQTFQPLSLSWSGKSE+RTL AEWVGGLLPL Sbjct: 72 IDVFSRDYGRIALVAKGAKRPLSKLRGVLQTFQPLSLSWSGKSEIRTLIAAEWVGGLLPL 131 Query: 136 EKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPIVLRQFERILLKQT 195 EKSALLCGFYLNELLVKL+AR+D H ALFDHYV TLN+LAH E APIVLRQFER LLKQT Sbjct: 132 EKSALLCGFYLNELLVKLVARDDPHAALFDHYVTTLNQLAHQEPAPIVLRQFERALLKQT 191 Query: 196 GVAGNWSHCVASGKAVQPDGIYVVDPEQGTRPERISDRAPKVSGKTLLDMEREDYSDPTT 255 GVAG+++ C +S + V P YVVDPE+G R R +D P+VSGKTLLDMEREDYSD T Sbjct: 192 GVAGDFTRCTSSRQPVDPVENYVVDPERGPRIARAADSWPRVSGKTLLDMEREDYSDVVT 251 Query: 256 QLQSKFLMRYLLSHHLGGAQLNTRQILIDLMQL 288 Q QSK LMR+LL+HHLGGA LNTRQILIDLMQL Sbjct: 252 QAQSKVLMRFLLAHHLGGAPLNTRQILIDLMQL 284 >ref|ZP_08275733.1| DNA recombination and repair protein RecO [Oxalobacteraceae bacterium IMCC9480] gb|EGF30797.1| DNA recombination and repair protein RecO [Oxalobacteraceae bacterium IMCC9480] Length = 264 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 180/241 (74%), Positives = 202/241 (83%) Query: 48 AVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRIALVAKGAKRPHSKLRGALQTF 107 A PEK ++ QPGFVLHSYP+KETSLIIDVF+R+HGRIALVAKGAKRPHS LRG LQTF Sbjct: 24 ASPEKPVRIAGQPGFVLHSYPHKETSLIIDVFTREHGRIALVAKGAKRPHSALRGVLQTF 83 Query: 108 QPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHY 167 QPLSLSW+GKSE+RTLT AEWVGGLLPLEKSALLCGFYLNELLVKL+AR+D HP LFDHY Sbjct: 84 QPLSLSWTGKSEIRTLTAAEWVGGLLPLEKSALLCGFYLNELLVKLIARDDPHPGLFDHY 143 Query: 168 VATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASGKAVQPDGIYVVDPEQGTRP 227 V+ LN+LAHGE A IVLR+FE L+KQTGVA + S C + + V P YVVDPE+G R Sbjct: 144 VSALNQLAHGEAATIVLRKFELSLMKQTGVAADLSLCSGTREPVVPTSSYVVDPERGVRL 203 Query: 228 ERISDRAPKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLSHHLGGAQLNTRQILIDLMQ 287 R SD P+VSG+TLLDMEREDY+ TTQ QSKFLMR+LL+H LGG LNTRQILIDL Q Sbjct: 204 ARPSDIWPRVSGQTLLDMEREDYAGTTTQSQSKFLMRFLLAHQLGGVPLNTRQILIDLTQ 263 Query: 288 L 288 L Sbjct: 264 L 264