BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2359.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775353.1| GTP-binding ERA protein [Herbaspirillum sero... 607 e-172 ref|YP_004753518.1| GTP-binding protein [Collimonas fungivorans ... 523 e-146 ref|YP_001353061.1| GTP-binding protein Era [Janthinobacterium s... 510 e-143 ref|YP_001100327.1| GTP-binding protein Era [Herminiimonas arsen... 508 e-142 ref|ZP_08275734.1| GTP-binding protein Era [Oxalobacteraceae bac... 504 e-141 >ref|YP_003775353.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1] gb|ADJ63445.1| GTP-binding ERA protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 303/309 (98%), Positives = 307/309 (99%) Query: 1 MTDSPMADDASAQTPESDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRI 60 MTDSPMADDASAQTP+SDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRI Sbjct: 1 MTDSPMADDASAQTPDSDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRI 60 Query: 61 TGIQTIENTQYVYVDTPGFQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQ 120 TGIQTIENTQYVYVDTPGFQTRHSNALNKTLNRTVTNTLTA+DVILFVIEAGTFGPADKQ Sbjct: 61 TGIQTIENTQYVYVDTPGFQTRHSNALNKTLNRTVTNTLTAADVILFVIEAGTFGPADKQ 120 Query: 121 VLDLLPANVPCILVLNKADRNKDKTTLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEE 180 VLDLLPANVPCILVLNKADRNKDKTTLMPFAR+VASHHDFAAVVPVSAKQRFQLDRLQEE Sbjct: 121 VLDLLPANVPCILVLNKADRNKDKTTLMPFAREVASHHDFAAVVPVSAKQRFQLDRLQEE 180 Query: 181 VRKLLPQNPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLR 240 VRKLLPQNPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLR Sbjct: 181 VRKLLPQNPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLR 240 Query: 241 RIFAAILVERDTHKAMVIGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNE 300 RIFAAILVERD HKAMVIGQKGARLKEISTQ+R DMERLFGGPVYLEIWVKVKSGWADNE Sbjct: 241 RIFAAILVERDNHKAMVIGQKGARLKEISTQSRQDMERLFGGPVYLEIWVKVKSGWADNE 300 Query: 301 AGLRAYGYE 309 AGLRAYGYE Sbjct: 301 AGLRAYGYE 309 >ref|YP_004753518.1| GTP-binding protein [Collimonas fungivorans Ter331] gb|AEK62695.1| GTP-binding protein [Collimonas fungivorans Ter331] Length = 309 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 257/309 (83%), Positives = 282/309 (91%) Query: 1 MTDSPMADDASAQTPESDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRI 60 MTDS + + +D+RCGYIAIVGRPNVGKSTLMN L+GAKVSITSRKAQTTRHRI Sbjct: 1 MTDSTPQASTAISSAATDFRCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRI 60 Query: 61 TGIQTIENTQYVYVDTPGFQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQ 120 TGIQT+ +TQ+VYVDTPGFQTRHSNALNKTLNRTVT TLTA+DVIL++IEAGTFGPAD+Q Sbjct: 61 TGIQTVADTQFVYVDTPGFQTRHSNALNKTLNRTVTTTLTAADVILYIIEAGTFGPADQQ 120 Query: 121 VLDLLPANVPCILVLNKADRNKDKTTLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEE 180 V+ LLPANVPCILV+NK+DR KDK L+PFA+ +A+ DFAAVVPVSAK RFQLD LQ E Sbjct: 121 VMALLPANVPCILVINKSDRVKDKAVLLPFAQKIAAMRDFAAVVPVSAKLRFQLDNLQGE 180 Query: 181 VRKLLPQNPPMFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLR 240 +RK LP NPPMF EDDITDRSEKFLA+EIVREKVFRFVG+ELPYTSTVLIEKFE EGNLR Sbjct: 181 IRKHLPANPPMFGEDDITDRSEKFLAAEIVREKVFRFVGDELPYTSTVLIEKFELEGNLR 240 Query: 241 RIFAAILVERDTHKAMVIGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNE 300 R+FAAILVERDTHK+MVIGQKGARLK+ISTQARLDMERLFGGPVYLEIWVKVKSGWADNE Sbjct: 241 RVFAAILVERDTHKSMVIGQKGARLKDISTQARLDMERLFGGPVYLEIWVKVKSGWADNE 300 Query: 301 AGLRAYGYE 309 AGLRAYGYE Sbjct: 301 AGLRAYGYE 309 >ref|YP_001353061.1| GTP-binding protein Era [Janthinobacterium sp. Marseille] gb|ABR89704.1| GTP-binding protein Era [Janthinobacterium sp. Marseille] Length = 300 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 248/293 (84%), Positives = 273/293 (93%) Query: 17 SDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQYVYVDT 76 S +RCGYIAIVGRPNVGKSTLMN L+GAKVSITSRKAQTTRHRITGIQT+E+ Q+VYVDT Sbjct: 8 SHFRCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVEDAQFVYVDT 67 Query: 77 PGFQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQVLDLLPANVPCILVLN 136 PGFQTRHSNALNKTLNRTVTNTLTA+DVIL+VIEAGTFG AD+QVLDL+P NVPCILV+N Sbjct: 68 PGFQTRHSNALNKTLNRTVTNTLTAADVILYVIEAGTFGQADQQVLDLIPKNVPCILVIN 127 Query: 137 KADRNKDKTTLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPPMFDEDD 196 K+DR KDK L+PFA+ +A+ DF AVVPVSAK RFQL+ LQ E++K LP+ PP+F EDD Sbjct: 128 KSDRVKDKAVLLPFAQQIAAKRDFTAVVPVSAKLRFQLEGLQGEIKKYLPEGPPIFGEDD 187 Query: 197 ITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVERDTHKAM 256 ITDRSEKFLA+EIVREKVFRFVG+ELPYTSTVLIEKFE EGNLRR+FAAILVERDTHK+M Sbjct: 188 ITDRSEKFLAAEIVREKVFRFVGDELPYTSTVLIEKFEVEGNLRRVFAAILVERDTHKSM 247 Query: 257 VIGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 309 VIG KGARLK+ISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE Sbjct: 248 VIGNKGARLKDISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 300 >ref|YP_001100327.1| GTP-binding protein Era [Herminiimonas arsenicoxydans] emb|CAL62204.1| GTP-binding protein Era [Herminiimonas arsenicoxydans] Length = 300 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 248/299 (82%), Positives = 274/299 (91%) Query: 11 SAQTPESDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQ 70 + T S +RCGYIAIVGRPNVGKSTLMN L+GAKVSITSRKAQTTRHRITGIQT+++ Q Sbjct: 2 TESTALSHFRCGYIAIVGRPNVGKSTLMNELIGAKVSITSRKAQTTRHRITGIQTVDDAQ 61 Query: 71 YVYVDTPGFQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQVLDLLPANVP 130 +VYVDTPGFQTRHSNALNKTLNRTVT TLTASDVILFVIEAGTFG AD+QVLDL+P NVP Sbjct: 62 FVYVDTPGFQTRHSNALNKTLNRTVTTTLTASDVILFVIEAGTFGQADQQVLDLIPKNVP 121 Query: 131 CILVLNKADRNKDKTTLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPP 190 CILV+NK+DR KDK L+PFA+ +A+ DF AVVPVSAK RFQL+ LQ E++K LP+NPP Sbjct: 122 CILVINKSDRVKDKAVLLPFAQQIAAKRDFTAVVPVSAKLRFQLENLQGEIKKHLPENPP 181 Query: 191 MFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVER 250 +F EDDITDRSEKFLA+EIVREK+FRFVG+ELPYTSTVLIEKFE EGNLRR+FAAILVER Sbjct: 182 VFGEDDITDRSEKFLAAEIVREKLFRFVGDELPYTSTVLIEKFELEGNLRRVFAAILVER 241 Query: 251 DTHKAMVIGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 309 DTHK+MVIG KG RLK+ISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE Sbjct: 242 DTHKSMVIGNKGERLKDISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 300 >ref|ZP_08275734.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480] gb|EGF30798.1| GTP-binding protein Era [Oxalobacteraceae bacterium IMCC9480] Length = 300 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 243/299 (81%), Positives = 275/299 (91%), Gaps = 2/299 (0%) Query: 11 SAQTPESDYRCGYIAIVGRPNVGKSTLMNVLVGAKVSITSRKAQTTRHRITGIQTIENTQ 70 SA P ++RCGYIAIVGRPNVGKSTLMN L+GAKVSITSRKAQTTRHRITGIQT+E+TQ Sbjct: 4 SALNP--NFRCGYIAIVGRPNVGKSTLMNALIGAKVSITSRKAQTTRHRITGIQTVEDTQ 61 Query: 71 YVYVDTPGFQTRHSNALNKTLNRTVTNTLTASDVILFVIEAGTFGPADKQVLDLLPANVP 130 ++YVDTPGFQT+H+NALNKTLN+TV NTLT++DVILF+IEAGTFGPAD+QVLDL+P VP Sbjct: 62 FIYVDTPGFQTKHANALNKTLNKTVANTLTSADVILFLIEAGTFGPADQQVLDLIPDTVP 121 Query: 131 CILVLNKADRNKDKTTLMPFARDVASHHDFAAVVPVSAKQRFQLDRLQEEVRKLLPQNPP 190 CILV+NK+DR KDK L+PFA+ +A+ HDFAAVVPVSA FQLD LQ+E R+ LP+NPP Sbjct: 122 CILVINKSDRVKDKAVLLPFAQQIAAKHDFAAVVPVSATLGFQLDGLQKETRRFLPENPP 181 Query: 191 MFDEDDITDRSEKFLASEIVREKVFRFVGEELPYTSTVLIEKFEQEGNLRRIFAAILVER 250 F DDITDRSEKFLA+EI+REKVFRFVG+ELPYTSTVLIEKFEQEG+LRR+FAAILVER Sbjct: 182 EFGPDDITDRSEKFLAAEIIREKVFRFVGDELPYTSTVLIEKFEQEGDLRRVFAAILVER 241 Query: 251 DTHKAMVIGQKGARLKEISTQARLDMERLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 309 THK+M+IGQKGARLKEISTQ+RLDM RLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE Sbjct: 242 STHKSMLIGQKGARLKEISTQSRLDMARLFGGPVYLEIWVKVKSGWADNEAGLRAYGYE 300