BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2358.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum ... 493 e-137 ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiim... 409 e-112 ref|YP_004753519.1| ribonuclease III [Collimonas fungivorans Ter... 407 e-111 ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Mars... 402 e-110 ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134] >g... 310 2e-82 >ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1] gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 291/334 (87%), Positives = 298/334 (89%), Gaps = 15/334 (4%) Query: 6 MDPQLLQQRLGHPFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 65 MDPQLLQQRLGH FKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI Sbjct: 1 MDPQLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 60 Query: 66 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 125 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 126 FLDSGFEAARAVIRSLYVPVLEHVDPKTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 185 FLDSGFEAARAVIRSLYVPVLEHVDP+TLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA Sbjct: 121 FLDSGFEAARAVIRSLYVPVLEHVDPRTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 180 Query: 186 HSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQLALAKTPSASRKPRTRTTQ 245 HSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQLALAKTPSA RKPRTRTTQ Sbjct: 181 HSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQLALAKTPSAGRKPRTRTTQ 240 Query: 246 LKLAGIATIQPDAPDQESAKSPRPEAAVSKPAKEAKPAREHKEQKEQKEQKEQQKDGRSQ 305 LKLAGIATIQPDAP+ ES K RP+A + K AKPA+E K + Sbjct: 241 LKLAGIATIQPDAPEHESGKGNRPDAVQTSAGKPAKPAKEQKS---------------AP 285 Query: 306 NGARHEGKTTGDRTETAAAEPISAASSASQSRTA 339 AR E K TGDR ETAAAEPISAASSA+QSRTA Sbjct: 286 AAARSEAKNTGDRPETAAAEPISAASSATQSRTA 319 >ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans] emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans] Length = 328 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 240/334 (71%), Positives = 270/334 (80%), Gaps = 6/334 (1%) Query: 6 MDPQLLQQRLGHPFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 65 MD LLQ RLGH FKDA L+QQALTHRSHS++HNERLEFLGDS+LNCVVASLLF+RY KI Sbjct: 1 MDVTLLQNRLGHTFKDAVLMQQALTHRSHSSVHNERLEFLGDSILNCVVASLLFDRYSKI 60 Query: 66 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 125 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 126 FLDSGFEAARAVIRSLYVPVLEHVDPKTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 185 FLD+GF AAR VIR+LY+P+L+ VDPKTLGKDAKTLLQE+LQGKKI LPQYNV+ATHGAA Sbjct: 121 FLDAGFNAARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180 Query: 186 HSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQLALAKTPSASRKPRTRTTQ 245 H+QEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQ AL KTP +SRK + RT Q Sbjct: 181 HNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQAALVKTPGSSRKSKPRTAQ 240 Query: 246 LKLAGIATIQPDAPDQESAKSPRPEAAVSKPAKEAKPAREHKEQKEQKEQKEQQKDGRSQ 305 LKLAGIAT+QPDAP P +++ AK AK E K + + Q+++ D + Sbjct: 241 LKLAGIATVQPDAPPLNEV-VPALKSSSKADAKSAKA--EVKAESDLATQQDKPSDAQKS 297 Query: 306 NGARHEGKTTGDRTETAAAEPISAASSASQSRTA 339 A + T D AA + +S+ S S+ A Sbjct: 298 LIAEAHAEQTSDAASDHAA---NKSSTTSHSKIA 328 >ref|YP_004753519.1| ribonuclease III [Collimonas fungivorans Ter331] gb|AEK62696.1| Ribonuclease III [Collimonas fungivorans Ter331] Length = 333 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 216/250 (86%), Positives = 232/250 (92%) Query: 6 MDPQLLQQRLGHPFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 65 MD LLQ RLGH FKDA+LLQQALTHRSHS LHNERLEFLGDS+LNCVVASLLF+RY KI Sbjct: 1 MDLMLLQNRLGHTFKDATLLQQALTHRSHSTLHNERLEFLGDSILNCVVASLLFDRYTKI 60 Query: 66 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 125 DEGDLSR+RANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRVRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 126 FLDSGFEAARAVIRSLYVPVLEHVDPKTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 185 FLD+GF+AAR VIR+LY+P+L+ VDPKTLGKDAKTLLQE+LQGKKI LPQYNV+ATHGAA Sbjct: 121 FLDAGFDAARDVIRALYIPILDTVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180 Query: 186 HSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQLALAKTPSASRKPRTRTTQ 245 H+QEFEIECLVPKLDIQVFG GGSRRAGEQAAAKLALEAVQ A K P+A RK + RT Q Sbjct: 181 HNQEFEIECLVPKLDIQVFGNGGSRRAGEQAAAKLALEAVQKAFVKAPAAPRKAKPRTAQ 240 Query: 246 LKLAGIATIQ 255 LKL+GIATIQ Sbjct: 241 LKLSGIATIQ 250 >ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille] gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille] Length = 322 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 216/250 (86%), Positives = 232/250 (92%) Query: 6 MDPQLLQQRLGHPFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 65 MD LLQ RLGH FKDA LLQQALTHRSH ++HNERLEFLGDS+LNCVVASLLF+RY KI Sbjct: 1 MDLTLLQNRLGHTFKDAVLLQQALTHRSHGSVHNERLEFLGDSILNCVVASLLFDRYSKI 60 Query: 66 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 125 DEGDLSRLRANLVKQQSLYEIAQRLELS FLRLGEGELKSGGFRRPSILADTLEALFGAI Sbjct: 61 DEGDLSRLRANLVKQQSLYEIAQRLELSHFLRLGEGELKSGGFRRPSILADTLEALFGAI 120 Query: 126 FLDSGFEAARAVIRSLYVPVLEHVDPKTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 185 FLD+GF+ AR VIR+LY+P+L+ VDPKTLGKDAKTLLQE+LQGKKI LPQYNV+ATHGAA Sbjct: 121 FLDAGFDTARDVIRALYIPILDSVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA 180 Query: 186 HSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQLALAKTPSASRKPRTRTTQ 245 H+QEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQ A KTP+ASRK + RT Q Sbjct: 181 HNQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQAAFVKTPAASRKAKPRTAQ 240 Query: 246 LKLAGIATIQ 255 LKLAGIAT+Q Sbjct: 241 LKLAGIATVQ 250 >ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134] sp|Q46Z18|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134] Length = 256 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 180/257 (70%), Positives = 208/257 (80%), Gaps = 8/257 (3%) Query: 6 MDPQLLQQRLGHPFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKI 65 M+ LQQRLG+ F LLQQALTHRSHSA HNERLEFLGDSVLNC VA +LF + K+ Sbjct: 1 MNLDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKL 60 Query: 66 DEGDLSRLRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 125 DEGDLSR+RANLVKQQ+LYEIAQ L+LS+ LRLGEGELKSGGFRRPSILAD LEA+ GA+ Sbjct: 61 DEGDLSRVRANLVKQQALYEIAQMLQLSEVLRLGEGELKSGGFRRPSILADALEAIVGAV 120 Query: 126 FLDSGFEAARAVIRSLYVPVLEHVDPKTLGKDAKTLLQEFLQGKKIPLPQYNVIATHGAA 185 FLD+GFEAAR +IR LY+P+LE VDP+TLGKDAKTLLQE+LQG KI LPQYNVIATHGAA Sbjct: 121 FLDAGFEAARTLIRKLYIPILEQVDPRTLGKDAKTLLQEYLQGHKIALPQYNVIATHGAA 180 Query: 186 HSQEFEIECLVPKLDIQVFGTGGSRRAGEQAAAKLALEAVQLALAKTPSASRKPRTRTTQ 245 HSQ+FE+EC+VPKL+++VFGTG SRRA EQAAAKLAL+ VQ + + SR RT T+ Sbjct: 181 HSQQFEVECMVPKLEVRVFGTGASRRAAEQAAAKLALDEVQKLVPQLLKRSRAERTGKTR 240 Query: 246 LKLAGIATIQPDAPDQE 262 QP PD + Sbjct: 241 K--------QPVPPDPQ 249