BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2354.p (493 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775348.1| periplasmic trypsin-like serine protease [He... 789 0.0 ref|YP_001100333.1| putative serine protease [Herminiimonas arse... 626 e-177 ref|YP_004753524.1| serine protease MucD/AlgY associated with si... 621 e-176 ref|YP_001353055.1| periplasmic serine protease [Janthinobacteri... 616 e-174 ref|ZP_08274467.1| HtrA protease/chaperone protein [Oxalobactera... 604 e-171 >ref|YP_003775348.1| periplasmic trypsin-like serine protease [Herbaspirillum seropedicae SmR1] gb|ADJ63440.1| periplasmic trypsin-like serine protease, containing C-terminal PDZ domain protein [Herbaspirillum seropedicae SmR1] Length = 492 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 471/493 (95%), Positives = 481/493 (97%), Gaps = 1/493 (0%) Query: 1 MTPMKNTLAGALLAASVFAAAPAVQAAPPVASPAVAALPDFADIVERTGPAVVNIRTTER 60 MTP+K TLA ALLAASVF AAP AAPPVASPAVAALPDFADIVERTGP VVNIRTTER Sbjct: 1 MTPLKTTLASALLAASVFVAAPVALAAPPVASPAVAALPDFADIVERTGPGVVNIRTTER 60 Query: 61 VRQNAQGQGGGMDDPEMQEFFRRFFGIPIPRQQQPGTPRGNGKQGGQGQQEEVPRGVGSG 120 VRQNAQGQGG +DDPEMQEFFRRFFGIPIPRQQQPGTPRGNGKQGGQGQQEEVPRGVGSG Sbjct: 61 VRQNAQGQGG-VDDPEMQEFFRRFFGIPIPRQQQPGTPRGNGKQGGQGQQEEVPRGVGSG 119 Query: 121 FIISADGFIMTNAHVVDGASEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSNLPRLNM 180 FIISADGFIMTNAHVV+GASEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSNLPRLNM Sbjct: 120 FIISADGFIMTNAHVVEGASEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSNLPRLNM 179 Query: 181 GDSDKIRVGEWVLAIGSPFGLENTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLI 240 GDSDKIRVGEWVLAIGSPFGLENTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLI Sbjct: 180 GDSDKIRVGEWVLAIGSPFGLENTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLI 239 Query: 241 NLKGEVVGINSQIYSRSGGFMGISFAVPIDEALRVADQLKASGRVTRGRIGVQIGEVTKD 300 NLKGEV+GINSQIYSRSGGFMGISFAVPIDEALRVADQLKASGRVTRGRIGVQIGEVTKD Sbjct: 240 NLKGEVIGINSQIYSRSGGFMGISFAVPIDEALRVADQLKASGRVTRGRIGVQIGEVTKD 299 Query: 301 VAESLGLARAQGALVQRVEAGGPADKAGLEAGDIILKYNGAAIERPSDLPRMVGATKPGA 360 VAESLGLARAQGALVQRVEAGGPA+KAGLEAGDIILKYNGAAIERPSDLPRMVG+TKPGA Sbjct: 300 VAESLGLARAQGALVQRVEAGGPAEKAGLEAGDIILKYNGAAIERPSDLPRMVGSTKPGA 359 Query: 361 KATVNIWRKGSARDVSVTVVELEADKPKQAEEKKAKPDNTPNSLGLVVSDLSDAQKKELK 420 KATV+IWRKGSARDVSVTVVELEADKPKQAEEKKAKPDN PNSLGLVVSDLSDAQ+KELK Sbjct: 360 KATVSIWRKGSARDVSVTVVELEADKPKQAEEKKAKPDNAPNSLGLVVSDLSDAQRKELK 419 Query: 421 VDNGVLVENVSGAAAAAGIRPGDVIQRLNEVDVNDSKQFGQLVAKLDAKKRAAVLVRRGD 480 VDNGVLVE VSGAAAAAGIRPGDVIQRLNEVDV D+KQF QLV+KLDAKKRAAVLVRRGD Sbjct: 420 VDNGVLVEAVSGAAAAAGIRPGDVIQRLNEVDVKDAKQFAQLVSKLDAKKRAAVLVRRGD 479 Query: 481 SSQFVPLRPNGGN 493 SSQFVPLRPNGGN Sbjct: 480 SSQFVPLRPNGGN 492 >ref|YP_001100333.1| putative serine protease [Herminiimonas arsenicoxydans] emb|CAL62210.1| Peptidase S1 [Herminiimonas arsenicoxydans] Length = 491 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 340/492 (69%), Positives = 410/492 (83%), Gaps = 5/492 (1%) Query: 1 MTPMKNTLAGALLAASVFAAAPAVQAAPP--VASPAVAALPDFADIVERTGPAVVNIRTT 58 M ++ L+ LL + P P +A+P+VA LPDF D+VE+TG AVVNIRTT Sbjct: 1 MLTVQKKLSVILLGVASAFLVPVTTGLAPSAMAAPSVAGLPDFTDLVEKTGAAVVNIRTT 60 Query: 59 ERVRQNAQGQGGGMDDPEMQEFFRRFFGIPIPRQQQPGTPRGNGKQGGQGQQEEVPRGVG 118 E+ + N QG +D EMQEFFRRFFG+PIP +QQ PRG K + + EEVPRGVG Sbjct: 61 EKAKVN-QGNSTS-EDEEMQEFFRRFFGVPIPPRQQQPAPRGRNKPDAEAE-EEVPRGVG 117 Query: 119 SGFIISADGFIMTNAHVVDGASEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSNLPRL 178 SGFIISADG++MTNAHVVDGA EVYVTLTDKREFKAKI+G+D RTDVA++KIDGSNLPRL Sbjct: 118 SGFIISADGYVMTNAHVVDGADEVYVTLTDKREFKAKIIGADKRTDVALVKIDGSNLPRL 177 Query: 179 NMGDSDKIRVGEWVLAIGSPFGLENTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGP 238 +GDS+KIRVGEWV+AIGSPFGL+NTVTAGIVSAKARDTG+YLPLIQTDVAVNPGNSGGP Sbjct: 178 TVGDSNKIRVGEWVIAIGSPFGLDNTVTAGIVSAKARDTGEYLPLIQTDVAVNPGNSGGP 237 Query: 239 LINLKGEVVGINSQIYSRSGGFMGISFAVPIDEALRVADQLKASGRVTRGRIGVQIGEVT 298 LIN++GEV+GINSQIYSRSGG+MGISFAVP+DEA+RV+DQL+ SG+VTRGRIGVQIGEVT Sbjct: 238 LINMRGEVIGINSQIYSRSGGYMGISFAVPMDEAMRVSDQLRTSGKVTRGRIGVQIGEVT 297 Query: 299 KDVAESLGLARAQGALVQRVEAGGPADKAGLEAGDIILKYNGAAIERPSDLPRMVGATKP 358 KDVAESLGL RAQGALVQRVEAGGPA+KAG+EAGD+ILK+NG A+ER SDLPR+VG+TKP Sbjct: 298 KDVAESLGLTRAQGALVQRVEAGGPAEKAGVEAGDVILKFNGVAVERSSDLPRVVGSTKP 357 Query: 359 GAKATVNIWRKGSARDVSVTVVELEADKPKQAEEKKAKPDNTPNSLGLVVSDLSDAQKKE 418 G ++T+ +WRKG+ RD++V + ELE +K + E KKAKP+ N+LGLVVSDL+ AQ KE Sbjct: 358 GTRSTLTVWRKGAMRDLNVMITELEPEKAAKPEVKKAKPEQVANTLGLVVSDLTPAQVKE 417 Query: 419 LKVDNGVLVENVSGAAAAAGIRPGDVIQRLNEVDVNDSKQFGQLVAKLDAKKRAAVLVRR 478 LK+D GVLVE+ ++A AG+R GD++ RLN D+ D++QF LVAKLD KK A +LVRR Sbjct: 418 LKIDGGVLVESAENSSARAGLRAGDILLRLNNTDIKDARQFNALVAKLDPKKTALLLVRR 477 Query: 479 GDSSQFVPLRPN 490 GDSSQFV ++P+ Sbjct: 478 GDSSQFVTIKPH 489 >ref|YP_004753524.1| serine protease MucD/AlgY associated with sigma factor RpoE [Collimonas fungivorans Ter331] gb|AEK62701.1| Serine protease precursor MucD/AlgY associated with sigma factor RpoE [Collimonas fungivorans Ter331] Length = 502 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 342/471 (72%), Positives = 399/471 (84%), Gaps = 2/471 (0%) Query: 22 PAVQAAPPVASPA-VAALPDFADIVERTGPAVVNIRTTERVRQNA-QGQGGGMDDPEMQE 79 PAV P A A V+ LPDF DIVE+TGPAVVNIRTTE+++ A QG G D EMQ+ Sbjct: 31 PAVMGIGPQAIAAPVSGLPDFTDIVEKTGPAVVNIRTTEKIKGGAGQGDSGDPSDDEMQD 90 Query: 80 FFRRFFGIPIPRQQQPGTPRGNGKQGGQGQQEEVPRGVGSGFIISADGFIMTNAHVVDGA 139 FFRRFFG+PIP +P P G++ QQEEVPRGVGSGF+ISADG++MTNAHV+DGA Sbjct: 91 FFRRFFGVPIPNMPRPQVPGQRGRKADPKQQEEVPRGVGSGFVISADGYVMTNAHVIDGA 150 Query: 140 SEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSNLPRLNMGDSDKIRVGEWVLAIGSPF 199 SEVYVTLTDKREFKAK++G+DTR+DVA+LKIDG+NLPRL MGDSDKI+ GEWVLAIGSPF Sbjct: 151 SEVYVTLTDKREFKAKVIGADTRSDVALLKIDGANLPRLTMGDSDKIKAGEWVLAIGSPF 210 Query: 200 GLENTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLINLKGEVVGINSQIYSRSGG 259 GLENTVTAGI+SAKARDTGDYLPLIQTDVAVNPGNSGGPLIN++GEVVGINSQIYSRSGG Sbjct: 211 GLENTVTAGIISAKARDTGDYLPLIQTDVAVNPGNSGGPLINMRGEVVGINSQIYSRSGG 270 Query: 260 FMGISFAVPIDEALRVADQLKASGRVTRGRIGVQIGEVTKDVAESLGLARAQGALVQRVE 319 FMGISFAVPIDEA+RV+DQLKASG+VTRGRIGVQIGEVTKDVAESLGL +A+GALV RVE Sbjct: 271 FMGISFAVPIDEAMRVSDQLKASGKVTRGRIGVQIGEVTKDVAESLGLPKAEGALVARVE 330 Query: 320 AGGPADKAGLEAGDIILKYNGAAIERPSDLPRMVGATKPGAKATVNIWRKGSARDVSVTV 379 A GPA KAGL+AGDIILK+NG AI++ +DLPR+VG TKPGA+ T+++WRKGS+RD +T+ Sbjct: 331 ADGPAAKAGLQAGDIILKFNGVAIDKANDLPRLVGNTKPGARGTISVWRKGSSRDFPITI 390 Query: 380 VELEADKPKQAEEKKAKPDNTPNSLGLVVSDLSDAQKKELKVDNGVLVENVSGAAAAAGI 439 EL ADK ++ K K + N+LGL VSDLSDA+KKEL VD GVL+E G+AA G+ Sbjct: 391 TELAADKIAADDDVKPKKEQVANALGLTVSDLSDARKKELGVDGGVLIETAEGSAARVGL 450 Query: 440 RPGDVIQRLNEVDVNDSKQFGQLVAKLDAKKRAAVLVRRGDSSQFVPLRPN 490 R GDV+QRLN D+ D+KQF LVAKL+ KK A +LVRRG+SSQFVPLRP+ Sbjct: 451 RAGDVVQRLNNTDIKDAKQFNALVAKLEPKKMAVLLVRRGESSQFVPLRPS 501 >ref|YP_001353055.1| periplasmic serine protease [Janthinobacterium sp. Marseille] gb|ABR89524.1| periplasmic serine protease [Janthinobacterium sp. Marseille] Length = 493 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 336/475 (70%), Positives = 400/475 (84%), Gaps = 3/475 (0%) Query: 15 ASVFAAAPAVQAAPPVASPAVAALPDFADIVERTGPAVVNIRTTERVRQNAQGQGGGMDD 74 AS F AP +A+P+VA LPDF D+VE+TGPAVVNIRTTE+ + Q DD Sbjct: 19 ASAFFIPAVAGVAPSIAAPSVAGLPDFTDLVEKTGPAVVNIRTTEKAK--VQQGNAATDD 76 Query: 75 PEMQEFFRRFFGIPIPRQQQPGTPRGNGKQGGQGQQEEVPRGVGSGFIISADGFIMTNAH 134 EMQEFFRRFFG PIP +QQ PRG GK G + EEVPRGVGSGFIISADG++MTNAH Sbjct: 77 EEMQEFFRRFFGAPIPPRQQQPAPRGRGKAGPDAE-EEVPRGVGSGFIISADGYVMTNAH 135 Query: 135 VVDGASEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSNLPRLNMGDSDKIRVGEWVLA 194 VV+GA EVYVTLTDKRE+KAKI+G+DTRTDVA++KI+GSNLPRL MGDS+KIRVGEWV+A Sbjct: 136 VVNGADEVYVTLTDKREYKAKIIGADTRTDVALVKIEGSNLPRLTMGDSNKIRVGEWVIA 195 Query: 195 IGSPFGLENTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLINLKGEVVGINSQIY 254 IGSPFGL+N+VTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLIN++GEV+GINSQIY Sbjct: 196 IGSPFGLDNSVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLINMRGEVIGINSQIY 255 Query: 255 SRSGGFMGISFAVPIDEALRVADQLKASGRVTRGRIGVQIGEVTKDVAESLGLARAQGAL 314 SRSGG+MGISFAVPIDEA+RV+DQL+A+G+VTRGR+GVQIGEVTKDVAESLGL+R QGAL Sbjct: 256 SRSGGYMGISFAVPIDEAMRVSDQLRATGKVTRGRVGVQIGEVTKDVAESLGLSRPQGAL 315 Query: 315 VQRVEAGGPADKAGLEAGDIILKYNGAAIERPSDLPRMVGATKPGAKATVNIWRKGSARD 374 VQRVE GGPA+K G+EAGD+ILK+NG IER SDLPR+VG+TKPG ++ + +WRKG+ RD Sbjct: 316 VQRVEPGGPAEKGGVEAGDVILKFNGVGIERSSDLPRLVGSTKPGTRSVMTVWRKGAMRD 375 Query: 375 VSVTVVELEADKPKQAEEKKAKPDNTPNSLGLVVSDLSDAQKKELKVDNGVLVENVSGAA 434 +++ V ELEADK + E+KK K + N+LGL+VSDL+ AQ KELK+D G+L+E GAA Sbjct: 376 LNLVVTELEADKVVKKEDKKPKAEQVANALGLIVSDLNAAQLKELKIDGGILIEATEGAA 435 Query: 435 AAAGIRPGDVIQRLNEVDVNDSKQFGQLVAKLDAKKRAAVLVRRGDSSQFVPLRP 489 A AG+R GD+I RLN D+ D++QF LVAKLD KK +LVRRGDSSQFV ++P Sbjct: 436 ARAGLRGGDIILRLNNTDIKDARQFNGLVAKLDTKKTTLLLVRRGDSSQFVTIKP 490 >ref|ZP_08274467.1| HtrA protease/chaperone protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32065.1| HtrA protease/chaperone protein [Oxalobacteraceae bacterium IMCC9480] Length = 494 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 340/482 (70%), Positives = 407/482 (84%), Gaps = 4/482 (0%) Query: 9 AGALLAASVFAAAPAVQAAPPVASPAVAALPDFADIVERTGPAVVNIRTTERVRQNAQGQ 68 A AL AA VF A+ A+ +VA LPDF D+V++ GPAVVNIRTTE+V+ NA G Sbjct: 13 ALALSAALVFVTQAAIALPASAAT-SVAGLPDFTDMVDKVGPAVVNIRTTEKVKSNASG- 70 Query: 69 GGGMDDPEMQEFFRRFFGIPIP-RQQQPGTPRGNGKQGGQGQQEEVPRGVGSGFIISADG 127 G+DD EMQEFF+RFFG+P+P RQQQP P + G EEV RGVGSGFIISADG Sbjct: 71 -AGVDDEEMQEFFKRFFGVPVPPRQQQPDRPSRPKRPGVPQPDEEVSRGVGSGFIISADG 129 Query: 128 FIMTNAHVVDGASEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSNLPRLNMGDSDKIR 187 ++MTNAHVVDGA EVYVTLTDKREFKAKI+G+D RTDVA++KI+G+NLPRL MGDS+K+R Sbjct: 130 YVMTNAHVVDGADEVYVTLTDKREFKAKIIGADKRTDVALVKIEGANLPRLAMGDSNKVR 189 Query: 188 VGEWVLAIGSPFGLENTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLINLKGEVV 247 VGEWV+AIGSPFGL+NTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLIN++GEV+ Sbjct: 190 VGEWVIAIGSPFGLDNTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGGPLINMRGEVI 249 Query: 248 GINSQIYSRSGGFMGISFAVPIDEALRVADQLKASGRVTRGRIGVQIGEVTKDVAESLGL 307 GINSQIYSRSGG+MGISFAVPIDEA+RV+DQLK G+VTRGRIGVQIGE+TKDVAESLGL Sbjct: 250 GINSQIYSRSGGYMGISFAVPIDEAMRVSDQLKQFGKVTRGRIGVQIGELTKDVAESLGL 309 Query: 308 ARAQGALVQRVEAGGPADKAGLEAGDIILKYNGAAIERPSDLPRMVGATKPGAKATVNIW 367 +AQGALVQRVE GGPA+KAG+EAGDIILK+NG I+R SDLPR+VG TKPG+ + +++W Sbjct: 310 TKAQGALVQRVETGGPAEKAGVEAGDIILKFNGVNIDRSSDLPRLVGNTKPGSSSVLSVW 369 Query: 368 RKGSARDVSVTVVELEADKPKQAEEKKAKPDNTPNSLGLVVSDLSDAQKKELKVDNGVLV 427 RKG++RD+ V + E+E++K + E+KK K + N+LGL+VS+LSDAQKKELK+D GV+V Sbjct: 370 RKGASRDLKVVIAEMESEKVAKREDKKPKAEQAANALGLIVSELSDAQKKELKLDGGVVV 429 Query: 428 ENVSGAAAAAGIRPGDVIQRLNEVDVNDSKQFGQLVAKLDAKKRAAVLVRRGDSSQFVPL 487 + GAAA AG+R GDV+ RLN DV D+KQF LVAKLD+KK A +LVRRGD+SQFVP+ Sbjct: 430 DGAEGAAARAGLRAGDVVLRLNNTDVKDAKQFAGLVAKLDSKKLAVILVRRGDASQFVPI 489 Query: 488 RP 489 RP Sbjct: 490 RP 491