BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2353.p (348 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775347.1| sigma-E factor regulatory (negative regulato... 474 e-132 ref|XP_002536915.1| Sigma-E factor regulatory protein rseB precu... 472 e-131 ref|YP_001353054.1| sigma-E factor negative regulatory protein R... 379 e-103 ref|YP_004753525.1| sigma factor RpoE negative regulatory protei... 357 1e-96 ref|YP_001100334.1| sigma factor algU regulatory protein mucB [H... 355 9e-96 >ref|YP_003775347.1| sigma-E factor regulatory (negative regulator) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63439.1| sigma-E factor regulatory (negative regulator) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 259/348 (74%), Positives = 288/348 (82%), Gaps = 10/348 (2%) Query: 1 MHLTGRLYGVLCLLATLLGFSLTPSAHAADGVSTTAASEATTSSTLLAQLQKMQSAAQHL 60 M TGRL GV LL L PSAHAA+G +A+ SS L+AQLQKMQS+AQHL Sbjct: 1 MRQTGRLLGV----LCLLPALLLPSAHAAEG------EQASASSLLMAQLQKMQSSAQHL 50 Query: 61 NYSGSFVYQQAAQMRSSRVTHVVAGKSELEKLELLDGKPREFVRDNEDVASYDPDQRIVR 120 NYSG FVYQQAA +RSSRVTHVV GK+ELEKLELLDGKP EF+R N++VASY P R +R Sbjct: 51 NYSGRFVYQQAALIRSSRVTHVVVGKNELEKLELLDGKPAEFIRSNDEVASYLPQSRTIR 110 Query: 121 REKRVTRDTFPAIVDARPEDLARFYRLQSDGDERVAGRNCQVIVLVPRDKLRYGYRFCAD 180 EKRVTRD FPAIVD RP+DL Y L++ DERVAGR+C+V++L PRDKLRYGYRF D Sbjct: 111 MEKRVTRDVFPAIVDVRPQDLGAQYHLRAGSDERVAGRDCRVVMLEPRDKLRYGYRFWTD 170 Query: 181 QATGLLLRGQTLDGRGEVIEQIAFTQIDIGGIDRARVSPTYKDTRGWRIEKAAMVPADLS 240 +ATGLLLR QTLDG+GEVIEQIAFTQI+IGGIDRARV+PTYKDT GW IEKA M P DL Sbjct: 171 KATGLLLRAQTLDGQGEVIEQIAFTQIEIGGIDRARVNPTYKDTHGWHIEKAVMTPIDLP 230 Query: 241 AWQITPPPGFRKIQQVRRVISDSGEAGAAPAQNRPAEREVLQIVFSDGLAAISVFIEPGS 300 WQ+TPPPGFRKIQQVRR+++ S GAAPAQNR AEREV QIVFSDGLAAISVFIEPGS Sbjct: 231 QWQVTPPPGFRKIQQVRRLMAGSAADGAAPAQNRAAEREVSQIVFSDGLAAISVFIEPGS 290 Query: 301 QGREEGTIQQGAMNILGRRQGDYWLTVVGEVPAAAIRQVANSIELKSK 348 GREEG+ QQGAM+ILGR QGDYWLTVVGEVPAAAIRQVA+SIELKSK Sbjct: 291 PGREEGSAQQGAMHILGRPQGDYWLTVVGEVPAAAIRQVADSIELKSK 338 >ref|XP_002536915.1| Sigma-E factor regulatory protein rseB precursor, putative [Ricinus communis] gb|EEF25469.1| Sigma-E factor regulatory protein rseB precursor, putative [Ricinus communis] Length = 338 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 258/348 (74%), Positives = 288/348 (82%), Gaps = 10/348 (2%) Query: 1 MHLTGRLYGVLCLLATLLGFSLTPSAHAADGVSTTAASEATTSSTLLAQLQKMQSAAQHL 60 M TGRL GV LL L PSAHAA+G +A+ SS L+AQLQKMQS+AQHL Sbjct: 1 MRQTGRLLGV----LCLLPALLLPSAHAAEG------EQASASSLLMAQLQKMQSSAQHL 50 Query: 61 NYSGSFVYQQAAQMRSSRVTHVVAGKSELEKLELLDGKPREFVRDNEDVASYDPDQRIVR 120 NYSG FVYQQAA +RSSRVTHVV GK+ELEKLELLDGKP EF+R N++VASY P R +R Sbjct: 51 NYSGRFVYQQAALIRSSRVTHVVVGKNELEKLELLDGKPAEFIRSNDEVASYLPQSRTIR 110 Query: 121 REKRVTRDTFPAIVDARPEDLARFYRLQSDGDERVAGRNCQVIVLVPRDKLRYGYRFCAD 180 EKRVTRD FPAIVD RP+DL Y L++ DERVAGR+C+V++L PRDKLRYGYRF D Sbjct: 111 MEKRVTRDVFPAIVDVRPQDLGAQYHLRAGSDERVAGRDCRVVMLEPRDKLRYGYRFWTD 170 Query: 181 QATGLLLRGQTLDGRGEVIEQIAFTQIDIGGIDRARVSPTYKDTRGWRIEKAAMVPADLS 240 +ATGLLLR QTLDG+GEVIEQIAFTQI+IGGIDRARV+PTYKDT+GW IEKA M P DL Sbjct: 171 KATGLLLRAQTLDGQGEVIEQIAFTQIEIGGIDRARVNPTYKDTQGWHIEKAVMTPIDLP 230 Query: 241 AWQITPPPGFRKIQQVRRVISDSGEAGAAPAQNRPAEREVLQIVFSDGLAAISVFIEPGS 300 WQ+TPPPGFRKIQQVRR+++ S GAAPAQNR AEREV QIVFSDGLAAISVFIEPGS Sbjct: 231 QWQVTPPPGFRKIQQVRRLMAGSAADGAAPAQNRAAEREVSQIVFSDGLAAISVFIEPGS 290 Query: 301 QGREEGTIQQGAMNILGRRQGDYWLTVVGEVPAAAIRQVANSIELKSK 348 GREEG+ QQG M+ILGR QGDYWLTVVGEVPAAAIRQVA+SIELKSK Sbjct: 291 PGREEGSAQQGVMHILGRPQGDYWLTVVGEVPAAAIRQVADSIELKSK 338 >ref|YP_001353054.1| sigma-E factor negative regulatory protein RseB [Janthinobacterium sp. Marseille] gb|ABR89800.1| sigma-E factor negative regulatory protein RseB [Janthinobacterium sp. Marseille] Length = 340 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 180/300 (60%), Positives = 241/300 (80%), Gaps = 2/300 (0%) Query: 50 LQKMQSAAQHLNYSGSFVYQQAAQMRSSRVTHVVAGKSELEKLELLDGKPREFVRDNEDV 109 L+K+QS+AQ LNYSG+FVYQQ +Q+R+SR+TH+ GK+ELEKLE+LDGKPRE++R+NE++ Sbjct: 42 LKKIQSSAQKLNYSGTFVYQQGSQVRTSRITHIFNGKNELEKLEILDGKPREYIRNNEEI 101 Query: 110 ASYDPDQRIVRREKRVTRDTFPAIVDARPEDLARFYRLQSDGDERVAGRNCQVIVLVPRD 169 A Y P+ + +R EKRVT+D FPAI+ A P DLA Y L+ RVAG +CQ I+L P+D Sbjct: 102 ACYVPENKSIRVEKRVTKDVFPAILGASPADLAEHYNLKKGETGRVAGYDCQAIILEPKD 161 Query: 170 KLRYGYRFCADQATGLLLRGQTLDGRGEVIEQIAFTQIDIGGIDRARVSPTYKDTRGWRI 229 KLRYGY+ A+++TGLLL+ QT++ + +V+EQIAFTQ+ IG ID +RV ++ +T+GWR+ Sbjct: 162 KLRYGYKLWAEKSTGLLLKAQTVNEKNDVVEQIAFTQLSIGHIDPSRVKSSFPNTQGWRV 221 Query: 230 EKAAMVPADLSAWQITP-PPGFRKIQQVRRVISDSGEAGAAPAQNRPAEREVLQIVFSDG 288 E A M +LS W + PPGF+KI++++R+I+D+ A AA P +REV QIV+SDG Sbjct: 222 ENAVMSETNLSGWTVKDIPPGFKKIREMKRLITDTAPANAA-ENTPPTQREVSQIVYSDG 280 Query: 289 LAAISVFIEPGSQGREEGTIQQGAMNILGRRQGDYWLTVVGEVPAAAIRQVANSIELKSK 348 LAAISVFIE G+Q R EG++QQGAMNI+G+RQGDYWLTVVGEVPAAAI+QV+NSIE KSK Sbjct: 281 LAAISVFIESGTQSRTEGSMQQGAMNIVGKRQGDYWLTVVGEVPAAAIKQVSNSIEFKSK 340 >ref|YP_004753525.1| sigma factor RpoE negative regulatory protein [Collimonas fungivorans Ter331] gb|AEK62702.1| Sigma factor RpoE negative regulatory protein [Collimonas fungivorans Ter331] Length = 346 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 175/325 (53%), Positives = 244/325 (75%), Gaps = 6/325 (1%) Query: 25 SAHAADGVSTTAASEATTSSTLLAQLQKMQSAAQHLNYSGSFVYQQAAQMRSSRVTHVVA 84 SAHA + A+ A A L+K+QSAAQ LNYSG+F+YQQA Q+R+SR+THV+ Sbjct: 27 SAHA----ESIDAANAADKQEAQALLKKIQSAAQKLNYSGTFIYQQANQIRTSRITHVLE 82 Query: 85 GKSELEKLELLDGKPREFVRDNEDVASYDPDQRIVRREKRVTRDTFPAIVDARPEDLARF 144 G++E+EKLE+LDG+PRE++R NEDV Y P+ R EKRVT+D FPAI+ A P DL + Sbjct: 83 GRNEVEKLEILDGQPREYIRRNEDVTGYMPETRTKIVEKRVTQDGFPAILAALPADLTEY 142 Query: 145 YRLQSDGDERVAGRNCQVIVLVPRDKLRYGYRFCADQATGLLLRGQTLDGRGEVIEQIAF 204 Y ++ RVAG +CQ ++L PRD +RYGY+ A++ +GLLLR QTL+G+ E++EQI+F Sbjct: 143 YNVKLGETGRVAGFDCQAVLLEPRDNMRYGYKLWAEKISGLLLRAQTLNGKNEIVEQISF 202 Query: 205 TQIDIGGIDRARVSPTYKDTRGWRIEKAAMVPADLSAWQITP-PPGFRKIQQVRRVISDS 263 TQI+IG IDR+ + P++ +T W E + + PA+L+ W +T PPGF+K+++++R+++D+ Sbjct: 203 TQINIGNIDRSHLKPSFGNTSSWHTENSLINPANLNEWTVTGMPPGFKKVRELKRMVADA 262 Query: 264 GEAGAAPAQNRPAEREVLQIVFSDGLAAISVFIEPGSQGREEGTIQQGAMNILGRRQGDY 323 A A REV Q++FSDGL AIS+FIEPGSQ R EG++QQGA+NI+G+RQGDY Sbjct: 263 PPAKGAVGM-AAMRREVSQLIFSDGLVAISIFIEPGSQSRTEGSLQQGALNIVGKRQGDY 321 Query: 324 WLTVVGEVPAAAIRQVANSIELKSK 348 WLT+VG+VP AA+RQVANSIELK+K Sbjct: 322 WLTIVGDVPPAAMRQVANSIELKNK 346 >ref|YP_001100334.1| sigma factor algU regulatory protein mucB [Herminiimonas arsenicoxydans] emb|CAL62211.1| Putative negative regulator of sigma E activity [Herminiimonas arsenicoxydans] Length = 338 Score = 355 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 179/347 (51%), Positives = 252/347 (72%), Gaps = 12/347 (3%) Query: 1 MHLTGRLYGVLCLLATLLGFSLTPSAHAADGVSTTAASEATTSSTLLAQLQKMQSAAQHL 60 M T ++ ++ L ++LL F+ +HA V + A + T A L+K+QS+AQ L Sbjct: 1 MQQTLGIFRLVVLFSSLLAFT----SHA-QSVEPSGAQQDTH-----AWLKKIQSSAQKL 50 Query: 61 NYSGSFVYQQAAQMRSSRVTHVVAGKSELEKLELLDGKPREFVRDNEDVASYDPDQRIVR 120 +YSG+FVYQQ +R+SR+TH++ GK+E+EKLE+LDGKPRE++R+NE++ Y P+ + +R Sbjct: 51 SYSGTFVYQQGNHVRTSRITHILNGKNEVEKLEILDGKPREYIRNNEEITCYVPESKSIR 110 Query: 121 REKRVTRDTFPAIVDARPEDLARFYRLQSDGDERVAGRNCQVIVLVPRDKLRYGYRFCAD 180 EKRVT D FPAI+ A P DLA Y+L+ RVAG +CQ I+L P+DKLRYGY+ ++ Sbjct: 111 VEKRVTPDVFPAILRASPGDLAEHYKLKKGETGRVAGFDCQAIILEPKDKLRYGYKLWSE 170 Query: 181 QATGLLLRGQTLDGRGEVIEQIAFTQIDIGGIDRARVSPTYKDTRGWRIEKAAMVPADLS 240 ++TGLLL+ QT++ + +V+EQIAFTQ+ IG +D +RV P++K+T GWR+E M +S Sbjct: 171 KSTGLLLKAQTINEKNDVVEQIAFTQLVIGHVDPSRVKPSFKNTHGWRVENTVMSETKIS 230 Query: 241 AWQI-TPPPGFRKIQQVRRVISDSGEAGAAPAQNRPAEREVLQIVFSDGLAAISVFIEPG 299 W P GF+KI++++R+I+D+ A A P +REV QIV+SDGLAAISVFIE Sbjct: 231 GWSAKNMPAGFKKIREMKRLITDT-PANATAGNAAPTQREVSQIVYSDGLAAISVFIESA 289 Query: 300 SQGREEGTIQQGAMNILGRRQGDYWLTVVGEVPAAAIRQVANSIELK 346 SQ R EG++QQGAMNI+G+R G++WLTVVGEVPA AI+QVANSIE K Sbjct: 290 SQSRTEGSMQQGAMNIVGKRHGEHWLTVVGEVPAEAIKQVANSIEFK 336