BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2352.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775346.1| transmembrane sigma-E factor negative regula... 255 3e-66 ref|XP_002536914.1| conserved hypothetical protein [Ricinus comm... 112 3e-23 ref|YP_004753526.1| sigma factor RpoE negative regulatory protei... 109 3e-22 ref|YP_001100335.1| transmembrane sigmaE factor negative regulat... 108 5e-22 ref|YP_001353053.1| anti sigma-E protein [Janthinobacterium sp. ... 99 5e-19 >ref|YP_003775346.1| transmembrane sigma-E factor negative regulatory transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63438.1| transmembrane sigma-E factor negative regulatory transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 232 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 190/232 (81%), Positives = 201/232 (86%), Gaps = 1/232 (0%) Query: 1 MDTKVTTKEQISALADGELGSEEMTLAFAALRSSKDAQDAWEDYHRIGEVLRSEEMDVSL 60 MDTKVTT+EQ SALADGEL +EEMT+A A LRSSKDAQ AWEDYHRIGEVLRSEEMDV L Sbjct: 1 MDTKVTTREQTSALADGELSAEEMTIALAGLRSSKDAQQAWEDYHRIGEVLRSEEMDVPL 60 Query: 61 SAGFSAKMSALLEAEPTIVAPQPAAAQPVAPVAQPVVATQAGKAANGDHRASRPGRLVRF 120 SAGFSA+MSALLEAEPTIVAPQ A +P V A AANGDHRA+RPGRLVRF Sbjct: 61 SAGFSARMSALLEAEPTIVAPQSTAVEPAPVAQPAVAVQAAKAAANGDHRAARPGRLVRF 120 Query: 121 LMPSAAAAAAAVAAVFVAMP-QQAVVTADAKMAAPVAQVASAPVNVPSAIATVADTNGNS 179 LMPSAAAAAAAVAAVFVAMP QQA+VTADAK APV+QVA APVNVPSAIATV+ TN N Sbjct: 121 LMPSAAAAAAAVAAVFVAMPQQQAMVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANP 180 Query: 180 QNVNQLSSLAQQGEVKRDPRIDDYLFAHQRFSPSYSSAQYTRSAAFSSDADK 231 QNV Q+SSLAQQGEVKRDPRIDDYLFAHQRFSPSYSSAQY RSAAFS+DADK Sbjct: 181 QNVTQVSSLAQQGEVKRDPRIDDYLFAHQRFSPSYSSAQYARSAAFSTDADK 232 >ref|XP_002536914.1| conserved hypothetical protein [Ricinus communis] gb|EEF25468.1| conserved hypothetical protein [Ricinus communis] Length = 111 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 97/111 (87%), Positives = 102/111 (91%), Gaps = 1/111 (0%) Query: 122 MPSAAAAAAAVAAVFVAMPQQ-AVVTADAKMAAPVAQVASAPVNVPSAIATVADTNGNSQ 180 MPSAAAAAAAVAAVFVAMPQQ A+VTADAK APV+QVA APVNVPSAIATV+ TN N Q Sbjct: 1 MPSAAAAAAAVAAVFVAMPQQQAMVTADAKAVAPVSQVAVAPVNVPSAIATVSTTNANPQ 60 Query: 181 NVNQLSSLAQQGEVKRDPRIDDYLFAHQRFSPSYSSAQYTRSAAFSSDADK 231 NV Q+SSLAQQGEVKRDPRIDDYLFAHQRFSPSYSSAQY RSAAFS+DADK Sbjct: 61 NVTQVSSLAQQGEVKRDPRIDDYLFAHQRFSPSYSSAQYARSAAFSTDADK 111 >ref|YP_004753526.1| sigma factor RpoE negative regulatory protein [Collimonas fungivorans Ter331] gb|AEK62703.1| Sigma factor RpoE negative regulatory protein [Collimonas fungivorans Ter331] Length = 207 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 94/231 (40%), Positives = 128/231 (55%), Gaps = 26/231 (11%) Query: 1 MDTKVTTKEQISALADGELGSEEMTLAFAALRSSKDAQDAWEDYHRIGEVLRSEEMDVSL 60 M+TK T+EQISALADGEL + + +A AALR + + +D W+ YH+IG+++RS++M +++ Sbjct: 1 MNTKDITQEQISALADGELSNAYVDMALAALRQA-EGRDTWDVYHQIGDIMRSDDMALTM 59 Query: 61 SAGFSAKMSALLEAEPTIVAPQPAAAQPVAPVAQPVVATQAGKAANGDHRASRPGRLVRF 120 SA FSA+M+A LEAEP I+ A P+A +QP G + R ++ Sbjct: 60 SADFSARMAARLEAEPAII------AAPLAVTSQPSEQIAVGGGQPLHAGGTGVRRSIKR 113 Query: 121 LMPSAAAAAAAVAAVFVAMPQQAVVTADAKMAAPVAQVASAPVNVPSAIATVADTNGNSQ 180 AAAA AA F+ PQ AVV AAP +ASA + T Sbjct: 114 FALPGMAAAAVAAAAFIITPQTAVVGVGGPSAAPQLALASASAVSDDHVVT--------- 164 Query: 181 NVNQLSSLAQQGEVKRDPRIDDYLFAHQRFSPS-YSSAQYTRSAAFSSDAD 230 G V RD R+D+YL AHQRFSPS YS+AQY R A F+ DA+ Sbjct: 165 ---------HSGVVLRDSRMDEYLTAHQRFSPSLYSAAQYARPATFAPDAN 206 >ref|YP_001100335.1| transmembrane sigmaE factor negative regulator protein [Herminiimonas arsenicoxydans] emb|CAL62212.1| putative anti sigma-E protein RseA, N-terminal [Herminiimonas arsenicoxydans] Length = 186 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 120/229 (52%), Gaps = 48/229 (20%) Query: 7 TKEQISALADGELGSEEMTLAFAALRSSKDAQDAWEDYHRIGEVLRSEEMDVSLSAGFSA 66 T+EQISA AD EL + + AALR +D ++AW YH+IG+ LRS+++++ F+A Sbjct: 2 TREQISAFADNELSDGHLEITLAALRQ-QDGREAWTLYHQIGDALRSDDLNLQPDTAFTA 60 Query: 67 KMSALLEAEPTIVAPQPAAAQPVAPVAQPVVATQAGKAANGDHRASRPGRLVRFLMPSAA 126 ++ A LEAEPTI+ P V + G R L RF MP A Sbjct: 61 RIFASLEAEPTIMVP---------------VEKRIG--------GGRESTLKRFAMPGMA 97 Query: 127 AAAAAVAAVFVA---MPQQAVVTADAKMAAPVAQVASAPVNVPSAIATVADTNGNSQNVN 183 AA AVAA MPQ A + A +APV A+ P V A Sbjct: 98 VAAVAVAAFLTVPQMMPQHAPLVASHSASAPVVLAAAGPETVTVA--------------- 142 Query: 184 QLSSLAQQGEVKRDPRIDDYLFAHQRFSPS-YSSAQYTRSAAFSSDADK 231 + +G+V RDPRID+YL AHQRFSPS YS+AQY RSA F+ D+DK Sbjct: 143 -----SHEGDVLRDPRIDEYLLAHQRFSPSVYSTAQYARSATFAVDSDK 186 >ref|YP_001353053.1| anti sigma-E protein [Janthinobacterium sp. Marseille] gb|ABR90577.1| anti sigma-E protein [Janthinobacterium sp. Marseille] Length = 182 Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 117/232 (50%), Gaps = 51/232 (21%) Query: 1 MDTKVTTKEQISALADGELGSEEMTLAFAALRSSKDAQDAWEDYHRIGEVLRSEEMDVSL 60 M+T T+EQISA AD EL + +A AALR ++ +D W YH+IG+ LRS++++ L Sbjct: 1 MNTTNMTREQISAFADNELSDGHVDIALAALRQ-QEGRDTWNMYHQIGDALRSDDLNTQL 59 Query: 61 SAGFSAKMSALLEAEPTIVAPQPAAAQPVAPVAQPVVATQAGKAANGDHRASRPGRLVRF 120 SA F+A+M A L+AE TI+ P D R Sbjct: 60 SADFNARMFARLDAEATIMVP-------------------------ADKRG--------- 85 Query: 121 LMPSAAAAAAAVAAVFVAMPQQAVVTADAKMAAPVAQVASAPVNVPSAIATVADTNGNSQ 180 A A AA+ + A V A + P ++APV +A+A Sbjct: 86 ----AVAKDAALRRFAMPAGMAAAVAVAAFLTVPQMMTSNAPVVTTAAVAP--------- 132 Query: 181 NVNQLSSLAQQGEVKRDPRIDDYLFAHQRFSPS-YSSAQYTRSAAFSSDADK 231 ++ ++ GEV RDPRIDDYL AHQRFSPS YSSAQY R+A F+ D+DK Sbjct: 133 --ETITVASKDGEVLRDPRIDDYLLAHQRFSPSVYSSAQYARAATFAVDSDK 182