BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2351.p (166 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775345.1| RNA polymerase sigma-E factor (sigma-24) tra... 296 1e-78 ref|YP_001353052.1| RNA polymerase sigma factor RpoE [Janthinoba... 282 1e-74 ref|ZP_08272632.1| RNA polymerase sigma factor RpoE [Oxalobacter... 280 6e-74 ref|YP_001100336.1| RNA polymerase sigma factor RpoE [Herminiimo... 280 7e-74 ref|YP_004753527.1| RNA polymerase sigma factor [Collimonas fung... 277 3e-73 >ref|YP_003775345.1| RNA polymerase sigma-E factor (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63437.1| RNA polymerase sigma-E factor (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 166/166 (100%), Positives = 166/166 (100%) Query: 1 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRR 60 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRR Sbjct: 35 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRR 94 Query: 61 APTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEELRTAITLREI 120 APTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEELRTAITLREI Sbjct: 95 APTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEELRTAITLREI 154 Query: 121 EGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 166 EGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW Sbjct: 155 EGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 200 >ref|YP_001353052.1| RNA polymerase sigma factor RpoE [Janthinobacterium sp. Marseille] gb|ABR88960.1| RNA polymerase sigma-70 factor, ECF subfamily [Janthinobacterium sp. Marseille] Length = 200 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 153/166 (92%), Positives = 159/166 (95%) Query: 1 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRR 60 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVT GRR Sbjct: 35 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTQGRR 94 Query: 61 APTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEELRTAITLREI 120 APTSTEAD EEAETFDD DHLRDINTPES+LATKQIAQT+N+AME LPEELR AITLREI Sbjct: 95 APTSTEADVEEAETFDDGDHLRDINTPESLLATKQIAQTLNLAMEELPEELRMAITLREI 154 Query: 121 EGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 166 EGLSYDEIA++M CPIGTVRSRIFRAREAI+EKLRPLLDTA DKRW Sbjct: 155 EGLSYDEIAESMGCPIGTVRSRIFRAREAISEKLRPLLDTALDKRW 200 >ref|ZP_08272632.1| RNA polymerase sigma factor RpoE [Oxalobacteraceae bacterium IMCC9480] gb|EGF33884.1| RNA polymerase sigma factor RpoE [Oxalobacteraceae bacterium IMCC9480] Length = 200 Score = 280 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 153/166 (92%), Positives = 160/166 (96%) Query: 1 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRR 60 MRLVSRLVRD AEAEDVVQEAFIKAYRALPQFRGD+AFYTWLYRIGINTAKN+LVT GRR Sbjct: 35 MRLVSRLVRDHAEAEDVVQEAFIKAYRALPQFRGDAAFYTWLYRIGINTAKNFLVTQGRR 94 Query: 61 APTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEELRTAITLREI 120 APTST+ADAEEAETF+DADHLRDINTPESMLATKQIA+TVNVAM ALPEELRTAITLREI Sbjct: 95 APTSTDADAEEAETFEDADHLRDINTPESMLATKQIAETVNVAMGALPEELRTAITLREI 154 Query: 121 EGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 166 EGLSYDEIADAM CPIGTVRSRIFRAREAIA++LRPLL TA DKRW Sbjct: 155 EGLSYDEIADAMGCPIGTVRSRIFRAREAIADRLRPLLGTAIDKRW 200 >ref|YP_001100336.1| RNA polymerase sigma factor RpoE [Herminiimonas arsenicoxydans] emb|CAL62213.1| RNA polymerase sigma-E factor (Sigma-24) [Herminiimonas arsenicoxydans] Length = 200 Score = 280 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 152/166 (91%), Positives = 158/166 (95%) Query: 1 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRR 60 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVT GRR Sbjct: 35 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTQGRR 94 Query: 61 APTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEELRTAITLREI 120 APTSTEAD EEAETFDD +HLRDINTPES+LATKQIAQT+N+AME LPEELR AITLREI Sbjct: 95 APTSTEADIEEAETFDDGEHLRDINTPESLLATKQIAQTLNLAMEELPEELRMAITLREI 154 Query: 121 EGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 166 EGLSYDEIA +M CPIGTVRSRIFRAREAI+EKLRPLLDTA DKRW Sbjct: 155 EGLSYDEIAVSMGCPIGTVRSRIFRAREAISEKLRPLLDTALDKRW 200 >ref|YP_004753527.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] gb|AEK62704.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] Length = 200 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 153/166 (92%), Positives = 159/166 (95%) Query: 1 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTMGRR 60 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVT GRR Sbjct: 35 MRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAKNYLVTQGRR 94 Query: 61 APTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEELRTAITLREI 120 APTSTEA++EEAETFDD + LRDINTPES+LATKQIAQTVN AMEALP ELRTAITLREI Sbjct: 95 APTSTEANSEEAETFDDGEQLRDINTPESLLATKQIAQTVNTAMEALPAELRTAITLREI 154 Query: 121 EGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 166 EGLSYDEIA+AM CPIGTVRSRIFRAREAIA+KLRPLLDTA DKRW Sbjct: 155 EGLSYDEIAEAMGCPIGTVRSRIFRAREAIADKLRPLLDTAIDKRW 200