BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2350.p         (194 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775344.1| flagellar hook-length control protein [Herba...   226   1e-57
ref|ZP_04575984.1| conserved hypothetical protein [Oxalobacter f...    89   4e-16
ref|YP_001353051.1| hypothetical protein mma_1361 [Janthinobacte...    89   5e-16
ref|YP_001100337.1| hypothetical protein HEAR2072 [Herminiimonas...    85   5e-15

>ref|YP_003775344.1| flagellar hook-length control protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63436.1| flagellar hook-length control protein [Herbaspirillum seropedicae
           SmR1]
          Length = 166

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 140/166 (84%), Positives = 152/166 (91%), Gaps = 1/166 (0%)

Query: 30  MSIAVSADIKPSRLLLLVTAFACLCVALTGVVLAFGMPGSLSWVARIALAMACILAAALA 89
           MSIAVSADIKPSRLLLLVT FACLCVALTGV+L   +PGS SW ARIALA+ACI+AA +A
Sbjct: 1   MSIAVSADIKPSRLLLLVTGFACLCVALTGVLLCVWLPGSWSWPARIALALACIIAAGVA 60

Query: 90  LVLVLRDRKVIWLHISGTGQIRVVEHLL-PSARAKPQVMKAGLAQLLAGSTIWPGMLFLR 148
           L+ VLR+RK IWLHISGTGQIRVVEHLL  S+R KPQVM AGLAQLLAGSTIWPGMLFLR
Sbjct: 61  LLTVLRERKTIWLHISGTGQIRVVEHLLAASSRTKPQVMSAGLAQLLAGSTIWPGMLFLR 120

Query: 149 LRLENGKIRTIPILTDSVSEDTFRALSVACRWLISHNTAKARLLEK 194
           LRLE+GK RTIP+L+DSVSEDTFRALSVACRWLISHNTAKAR+LEK
Sbjct: 121 LRLESGKTRTIPVLSDSVSEDTFRALSVACRWLISHNTAKARMLEK 166


>ref|ZP_04575984.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gb|EEO26946.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 166

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 5/159 (3%)

Query: 30  MSIAVSADIKPSRL-LLLVTAFACLCVALTGVVLAFGMPGSLSWVARIALAMACILAAAL 88
           M+IAVSA +KPSR   +LV  FA   + LTGV +  G+ G      RI L  A + A  +
Sbjct: 6   MTIAVSAWVKPSRCQAILVLGFAVFFL-LTGVSMGGGLLGEFVLYGRIWLTPAFLTAGLM 64

Query: 89  ALVLVLRDRKVIWLHISGTGQIRVVEHL---LPSARAKPQVMKAGLAQLLAGSTIWPGML 145
            +   +R RK + + ISG GQIR+ E+      ++  K       +  L+  STIWP ++
Sbjct: 65  LVFGYVRARKTLRIDISGNGQIRLKEYKGNEFDTSEKKNGFNDGNVWTLMENSTIWPWLI 124

Query: 146 FLRLRLENGKIRTIPILTDSVSEDTFRALSVACRWLISH 184
            L L  E+  +  I I  DS+  D F+ L  ACRW+ +H
Sbjct: 125 VLNLESESKNVSRILIFFDSMQPDDFKVLYAACRWIDAH 163


>ref|YP_001353051.1| hypothetical protein mma_1361 [Janthinobacterium sp. Marseille]
 gb|ABR91411.1| Hypothetical protein mma_1361 [Janthinobacterium sp. Marseille]
          Length = 164

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 89/154 (57%), Gaps = 5/154 (3%)

Query: 30  MSIAVSADIKPSRLLLLVTAFACLCVALTGVVLAFGMPGSLSWVARIALAMACILAAALA 89
           MSIAVSA +K SRLL  +    C  + L G +L F   G LS + R  LA+AC  + +  
Sbjct: 1   MSIAVSAVVKQSRLLSGLLLLMCAGLVLIGGLLLFAQVGDLSLMMRSLLAVACFASGSYV 60

Query: 90  LVLVLRDRKVIWLHISGTGQIRVVEHLLPSARAKPQVMKAG-LAQLLAGSTIWPGMLFLR 148
               L+  K+  +HISG+GQIR    LL        +   G L +LL  ST+WPG+L LR
Sbjct: 61  FFQTLKSGKIYKIHISGSGQIR----LLAKPEGGADLADEGELVELLPDSTLWPGLLLLR 116

Query: 149 LRLENGKIRTIPILTDSVSEDTFRALSVACRWLI 182
           L+ E  +   + IL DSVS ++FRAL VACRW++
Sbjct: 117 LQNEGLQTHNVVILPDSVSAESFRALLVACRWIV 150


>ref|YP_001100337.1| hypothetical protein HEAR2072 [Herminiimonas arsenicoxydans]
 emb|CAL62214.1| Hypothetical protein; putative membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 166

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 30  MSIAVSADIKPSRLLLLVTAFACLCVALTGVVLAFGMPGSLSWVARIALAMACILAAALA 89
           MSIAVSA ++PSR L L+     + +     ++A G   +L   ARIAL + CI  A   
Sbjct: 1   MSIAVSAVVQPSRRLFLLVGGMLVILFFIAGLIASGRMETLPIAARIALTVMCIAVALHV 60

Query: 90  LVLVLRDRKVIWLHISGTGQIRVVEHLLPSARAKPQVMKAGLAQLLAGSTIWPGMLFLRL 149
              V+  RK+  +HISGTGQIR+++           V +  +  LL  ST+W G+L L L
Sbjct: 61  FFHVMWRRKIYVIHISGTGQIRILQRQKNGPSGYDSV-EGEVVHLLPVSTLWSGLLLLHL 119

Query: 150 RLENGKIRTIPILTDSVSEDTFRALSVACRWLISHN 185
           + +  +   + IL DSVS  +F+A+ +ACRW++S +
Sbjct: 120 QNDQQQTVVVTILPDSVSPASFKAVLLACRWIVSRH 155