BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2339.p         (72 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775334.1| Fe-S protein [Herbaspirillum seropedicae SmR...   106   1e-21
ref|ZP_08273646.1| hypothetical protein IMCC9480_1697 [Oxalobact...    96   1e-18
ref|YP_004752539.1| hypothetical protein CFU_1884 [Collimonas fu...    90   1e-16
ref|ZP_08506619.1| hypothetical protein METUNv1_03709 [Methylove...    87   1e-15
ref|YP_784697.1| hypothetical protein BAV0159 [Bordetella avium ...    84   6e-15

>ref|YP_003775334.1| Fe-S protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63426.1| Fe-S protein [Herbaspirillum seropedicae SmR1]
          Length = 100

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/57 (92%), Positives = 55/57 (96%)

Query: 16  ERPDTPCVAVCSTTFDDVCRGCGRTVDEVAQWVFMDKDQREVVWQRILAEGYPRRNY 72
           ERPDTPCVAVCSTTFDDVCRGCGRTVDEVAQWVFMD +QRE VWQRILA+GYPRRNY
Sbjct: 44  ERPDTPCVAVCSTTFDDVCRGCGRTVDEVAQWVFMDVEQRERVWQRILAQGYPRRNY 100


>ref|ZP_08273646.1| hypothetical protein IMCC9480_1697 [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF32879.1| hypothetical protein IMCC9480_1697 [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 62

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 52/56 (92%)

Query: 15 PERPDTPCVAVCSTTFDDVCRGCGRTVDEVAQWVFMDKDQREVVWQRILAEGYPRR 70
          P RPDTPCVAVCSTTFDDVCRGCGRTV EVAQWVF+ + ++E+VW+R++AEGYPRR
Sbjct: 5  PARPDTPCVAVCSTTFDDVCRGCGRTVAEVAQWVFLSELEKEIVWERLIAEGYPRR 60


>ref|YP_004752539.1| hypothetical protein CFU_1884 [Collimonas fungivorans Ter331]
 gb|AEK61716.1| hypothetical protein CFU_1884 [Collimonas fungivorans Ter331]
          Length = 63

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/58 (75%), Positives = 51/58 (87%)

Query: 13 SAPERPDTPCVAVCSTTFDDVCRGCGRTVDEVAQWVFMDKDQREVVWQRILAEGYPRR 70
          S  +RPDTPCVAVCSTTFDDVCRGCGRTV+EVA WVFM ++++  VW+RI AEGYPRR
Sbjct: 4  SPSQRPDTPCVAVCSTTFDDVCRGCGRTVNEVAHWVFMTEEEKTKVWERITAEGYPRR 61


>ref|ZP_08506619.1| hypothetical protein METUNv1_03709 [Methyloversatilis universalis
          FAM5]
 gb|EGK69746.1| hypothetical protein METUNv1_03709 [Methyloversatilis universalis
          FAM5]
          Length = 74

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/63 (69%), Positives = 51/63 (80%), Gaps = 1/63 (1%)

Query: 9  SAVPSAPERPDTPCVAVCSTTFDDVCRGCGRTVDEVAQWVFMDKDQREVVWQRILAEGYP 68
          S +P+A E PDTPCVA+CST FD+VCRGCGRTV EVA WVFM  D++  VW RI AEGYP
Sbjct: 2  SELPTADE-PDTPCVAICSTLFDEVCRGCGRTVMEVANWVFMTPDEKRAVWTRIRAEGYP 60

Query: 69 RRN 71
          RR+
Sbjct: 61 RRD 63


>ref|YP_784697.1| hypothetical protein BAV0159 [Bordetella avium 197N]
 emb|CAJ47765.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 74

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/66 (62%), Positives = 51/66 (77%)

Query: 6  SSQSAVPSAPERPDTPCVAVCSTTFDDVCRGCGRTVDEVAQWVFMDKDQREVVWQRILAE 65
          S++ A P A    D+PCVAVCST FDD+CRGCGRT  EVA WVFM+++++  VW RI A+
Sbjct: 7  SAEPAAPGAFTASDSPCVAVCSTLFDDICRGCGRTAIEVANWVFMNEEEKREVWVRIRAQ 66

Query: 66 GYPRRN 71
          GYPRRN
Sbjct: 67 GYPRRN 72