BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2338.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775332.1| CBS-domain-containing membrane protein [Herb... 660 0.0 ref|YP_001353277.1| signal transduction protein [Janthinobacteri... 446 e-123 ref|YP_001099993.1| hypothetical protein HEAR1711 [Herminiimonas... 427 e-117 ref|YP_004754136.1| CBS domain containing membrane protein [Coll... 405 e-111 ref|YP_004040550.1| cbs domain-containing membrane protein [Meth... 399 e-109 >ref|YP_003775332.1| CBS-domain-containing membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63424.1| CBS-domain-containing membrane protein [Herbaspirillum seropedicae SmR1] Length = 400 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 354/404 (87%), Positives = 371/404 (91%), Gaps = 6/404 (1%) Query: 1 MPDSILLWLKSFIPAKTNVDRFERMRACAGSLFGILLVGLTSYALLPHEARTIWLIAPMG 60 MPDSI LW KSFIPAK NVDRFERMR+CAGSLFGILLVG+ SYA+LPH+A TIWLIAPMG Sbjct: 3 MPDSISLWFKSFIPAKANVDRFERMRSCAGSLFGILLVGMVSYAVLPHKAGTIWLIAPMG 62 Query: 61 ASAVLLFAVPSSPLAQPWSILGGNLCAALIGVSCAKLVQEPALAAALAIALAIGGMFLLR 120 ASAVLLFAVPSSPLAQPWSI+GGNLCAALIGV+CAKLV EPALAAALAIALAIG MF LR Sbjct: 63 ASAVLLFAVPSSPLAQPWSIIGGNLCAALIGVTCAKLVPEPALAAALAIALAIGAMFYLR 122 Query: 121 CIHPPSGAVALTAVLGGPVVHDMGYAFVLSPVLLNSALLLAAALFYNNATGRRYPHAQHS 180 CIHPPSGAVALTAVLGGP V MGY FVLSPVLLNS LLLA ALF+NNA+GRRYPHAQ S Sbjct: 123 CIHPPSGAVALTAVLGGPAVQAMGYGFVLSPVLLNSVLLLATALFFNNASGRRYPHAQQS 182 Query: 181 AAPHPHQTRDELPITRLGFSHEDLDAVLKDFNQVLDIGRDDLEEIFLQTEMRAYHRRFGQ 240 AAPHPH TRDELPITRLGFSHEDLD VLK +NQVLDIGRDDLEEIFLQTEMRAYHRRFGQ Sbjct: 183 AAPHPHHTRDELPITRLGFSHEDLDEVLKRYNQVLDIGRDDLEEIFLQTEMRAYHRRFGQ 242 Query: 241 TLCAAVMSRDVVAVEFATGLDEAWRLLQEHQLRALPVLDRGRHVIGIVSRTDFLEHAGVE 300 TLCA+VMSRDVVAVEFATGLDEAWRLLQ H+LRALPV+DRGRHVIGI+SR+DFLEHAGVE Sbjct: 243 TLCASVMSRDVVAVEFATGLDEAWRLLQAHRLRALPVIDRGRHVIGIISRSDFLEHAGVE 302 Query: 301 VHTGLAAQLRRLLHRVPFTHSDKPEVVGQIMSRPVITAQVDTPVLELVPRMADGLHQIPV 360 VHTGL AQLR LLHRVP HSDKPEVVGQIMSRPV+TAQVDTP+LELVPRMADGLHQIPV Sbjct: 303 VHTGLTAQLRALLHRVPLLHSDKPEVVGQIMSRPVVTAQVDTPLLELVPRMADGLHQIPV 362 Query: 361 VQADGKLVGMLTQSDMIAALYEKNLVAARAVAATGAVSSLRSAA 404 VQADGKL GMLTQSDMIAALYEKNL AAR + SLRSAA Sbjct: 363 VQADGKLAGMLTQSDMIAALYEKNLAAAR------SGPSLRSAA 400 >ref|YP_001353277.1| signal transduction protein [Janthinobacterium sp. Marseille] gb|ABR88350.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 394 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 237/381 (62%), Positives = 291/381 (76%), Gaps = 2/381 (0%) Query: 9 LKSFIPAKTNVDRFERMRACAGSLFGILLVGLTSYALLPHEARTIWLIAPMGASAVLLFA 68 L P VDR+E+MRACAG+LFG++L GL SY +L + WLIAPMGAS+VLLFA Sbjct: 9 LTRIFPTPGTVDRYEKMRACAGALFGLVLTGLCSYFILGKDIHAAWLIAPMGASSVLLFA 68 Query: 69 VPSSPLAQPWSILGGNLCAALIGVSCAKLVQEPALAAALAIALAIGGMFLLRCIHPPSGA 128 VP+SPLAQPWSI+GGN+ AA+IGV+CAK++ EP LAA +A ALAIG MF RCIHPPSGA Sbjct: 69 VPASPLAQPWSIMGGNILAAIIGVTCAKMIDEPILAAGVAAALAIGAMFAARCIHPPSGA 128 Query: 129 VALTAVLGGPVVHDMGYAFVLSPVLLNSALLLAAALFYNNATGRRYPHAQHSA-APHPHQ 187 VALTAVLGGP VH MGY+FV+ PV LNSALLL ALFYNNATGRRYPH + H Sbjct: 129 VALTAVLGGPAVHAMGYSFVIIPVALNSALLLITALFYNNATGRRYPHRPLPPDTANKHN 188 Query: 188 TRDELPITRLGFSHEDLDAVLKDFNQVLDIGRDDLEEIFLQTEMRAYHRRFGQTLCAAVM 247 T D P R+G + DLDAVL +NQVLDI RDDLE I LQTEM+AY RR G+T+CAAVM Sbjct: 189 TSDAAPTERIGIAPADLDAVLTRYNQVLDISRDDLEAIMLQTEMQAYRRRLGETVCAAVM 248 Query: 248 SRDVVAVEFATGLDEAWRLLQEHQLRALPVLDRGRHVIGIVSRTDFLEHAGVEVHTGLAA 307 S+DVV EF T L +AW LL++H L ALPV+DRGRHVIGIV++ DFL+HA +E H GLA Sbjct: 249 SKDVVTAEFGTTLADAWTLLKQHDLTALPVIDRGRHVIGIVTKADFLKHAEIEPHDGLAE 308 Query: 308 QLRRLLHRVPFTHSDKPEVVGQIMSRPVITAQVDTPVLELVPRMADG-LHQIPVVQADGK 366 +L+ L+ +H++K EVVGQIM+ V+TA + +L+LVP M+D LHQ+PV+ G+ Sbjct: 309 RLKHLITPSMLSHTEKHEVVGQIMTTEVMTADANQSILDLVPLMSDSELHQVPVIDERGR 368 Query: 367 LVGMLTQSDMIAALYEKNLVA 387 LVGM++Q+DMIAALYE +L + Sbjct: 369 LVGMISQTDMIAALYEHSLTS 389 >ref|YP_001099993.1| hypothetical protein HEAR1711 [Herminiimonas arsenicoxydans] emb|CAL61868.1| Putative HPP family protein with CBS domain [Herminiimonas arsenicoxydans] Length = 390 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 235/386 (60%), Positives = 284/386 (73%), Gaps = 1/386 (0%) Query: 4 SILLWLKSFIPAKTNVDRFERMRACAGSLFGILLVGLTSYALLPHEARTIWLIAPMGASA 63 S L L +PA VDR+E+MRACAG+LFGI+L L SY +L + WLIAPMGAS+ Sbjct: 4 SKLKLLLRIVPASGLVDRYEKMRACAGALFGIVLTALCSYFILGKDINAAWLIAPMGASS 63 Query: 64 VLLFAVPSSPLAQPWSILGGNLCAALIGVSCAKLVQEPALAAALAIALAIGGMFLLRCIH 123 VLLFAVP+SPLAQPWSI+GGN+ AA+IGV+CAK V EP LAA LA +LAIG MF RCIH Sbjct: 64 VLLFAVPASPLAQPWSIMGGNIIAAIIGVTCAKFVGEPILAAGLAASLAIGAMFTFRCIH 123 Query: 124 PPSGAVALTAVLGGPVVHDMGYAFVLSPVLLNSALLLAAALFYNNATGRRYPHAQHSAAP 183 PPSGAVALTAVLGGP VH MGY+FVL PV LNS LLL ALF+NNATGRRYPH Sbjct: 124 PPSGAVALTAVLGGPAVHAMGYSFVLIPVALNSLLLLLTALFFNNATGRRYPHIVQPDRG 183 Query: 184 HPHQTRDELPITRLGFSHEDLDAVLKDFNQVLDIGRDDLEEIFLQTEMRAYHRRFGQTLC 243 + H T+D P R G + EDLD VL +NQVLDI RDDLE I LQTEM+AY RR T C Sbjct: 184 NKHNTKDVAPTERTGITPEDLDVVLARYNQVLDISRDDLESIMLQTEMQAYRRRLDGTKC 243 Query: 244 AAVMSRDVVAVEFATGLDEAWRLLQEHQLRALPVLDRGRHVIGIVSRTDFLEHAGVEVHT 303 A +MS+DV+ VEF T L EAWR + H L ALPV+DRGR VIGIV++ DFL+HA VE H Sbjct: 244 ADIMSKDVIYVEFGTELAEAWRQFKSHDLTALPVIDRGRRVIGIVTKADFLKHAEVEAHE 303 Query: 304 GLAAQLRRLLHRVPFTHSDKPEVVGQIMSRPVITAQVDTPVLELVPRMADG-LHQIPVVQ 362 GL +L L+ +H++K EVVGQIM++ V TA + ++ELVP M+D +HQ+PV+ Sbjct: 304 GLGRKLANLIRPSLLSHTEKHEVVGQIMTKEVYTANANQSIVELVPLMSDSEVHQMPVID 363 Query: 363 ADGKLVGMLTQSDMIAALYEKNLVAA 388 D +LVGM+TQ+DMIAAL+E ++ A Sbjct: 364 DDNRLVGMITQTDMIAALFEHSMAEA 389 >ref|YP_004754136.1| CBS domain containing membrane protein [Collimonas fungivorans Ter331] gb|AEK63313.1| CBS domain containing membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 218/383 (56%), Positives = 283/383 (73%), Gaps = 1/383 (0%) Query: 3 DSILLWLKSFIPAKTNVDRFERMRACAGSLFGILLVGLTSYALLPHEARTIWLIAPMGAS 62 D I LWL FIP V+ ER+RAC G+L GILL GL S+ L A LIAPMGAS Sbjct: 2 DQIRLWLSGFIPGPMMVNSTERLRACCGALLGILLTGLVSHWALGPTAALPLLIAPMGAS 61 Query: 63 AVLLFAVPSSPLAQPWSILGGNLCAALIGVSCAKLVQEPALAAALAIALAIGGMFLLRCI 122 AVLLF VP+SPLAQPWSI+GGNL AA+IGV+CA+ + +P A ++A++ AIG MF LRC+ Sbjct: 62 AVLLFGVPASPLAQPWSIIGGNLVAAVIGVACARWIPDPLFATSIAVSAAIGAMFALRCL 121 Query: 123 HPPSGAVALTAVLGGPVVHDMGYAFVLSPVLLNSALLLAAALFYNNATGRRYPHAQHSAA 182 HPPSGAVALTAVLGGP V +G+ FVL+PVLLNS LLL AL +NNAT RRYPH H+ Sbjct: 122 HPPSGAVALTAVLGGPAVTGLGFHFVLAPVLLNSVLLLLVALLFNNATRRRYPHVAHADP 181 Query: 183 PHPHQTRDELPITRLGFSHEDLDAVLKDFNQVLDIGRDDLEEIFLQTEMRAYHRRFGQTL 242 HQT+D+ R+GF+ DLD VL+ +NQVLD+ RDDLE + LQTE+ AY RRFG Sbjct: 182 GKLHQTKDQPSGRRVGFTQADLDYVLQQYNQVLDVSRDDLENLILQTELHAYQRRFGAIT 241 Query: 243 CAAVMSRDVVAVEFATGLDEAWRLLQEHQLRALPVLDRGRHVIGIVSRTDFLEHAGVEVH 302 CA +MSRDVV+VE+ T L++AW LL +H+++ALPV++ R +IGI+++TDF+ A ++V+ Sbjct: 242 CADIMSRDVVSVEYGTSLEDAWALLLKHRIKALPVINSARRLIGIITQTDFMRQANLQVY 301 Query: 303 TGLAAQLRRLLHRVPFTHSDKPEVVGQIMSRPVITAQVDTPVLELVPRMAD-GLHQIPVV 361 TG +L++ + R THSDKPEVVGQIM+ V +A+ D ++ELV ++D G+H IP+V Sbjct: 302 TGFDQKLKQFIRRTTSTHSDKPEVVGQIMTSAVQSAEADAHIVELVQPLSDSGIHHIPIV 361 Query: 362 QADGKLVGMLTQSDMIAALYEKN 384 +LVGM+TQSDM+AALY N Sbjct: 362 DGQRRLVGMVTQSDMVAALYRGN 384 >ref|YP_004040550.1| cbs domain-containing membrane protein [Methylovorus sp. MP688] gb|ADQ85314.1| CBS domain containing membrane protein [Methylovorus sp. MP688] Length = 397 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 211/385 (54%), Positives = 281/385 (72%), Gaps = 3/385 (0%) Query: 3 DSILLWLKSFIPAKTNVDRFERMRACAGSLFGILLVGLTSYALLPHEARTIWLIAPMGAS 62 ++++ +++ F P V ER+RAC G+L GIL+ S ALL A +L+AP+GAS Sbjct: 8 NALMQFMRRFRPQTNIVSHSERLRACGGALLGILITASVS-ALLVDNASLPFLMAPIGAS 66 Query: 63 AVLLFAVPSSPLAQPWSILGGNLCAALIGVSCAKLVQEPALAAALAIALAIGGMFLLRCI 122 AVLL+A P+SPLAQPWSI+GGN+ +A+ GV CA + P LAAA AI LAIG MF +RC+ Sbjct: 67 AVLLYAAPASPLAQPWSIMGGNMLSAIAGVLCASWISSPLLAAAAAIFLAIGLMFAMRCL 126 Query: 123 HPPSGAVALTAVLGGPVVHDMGYAFVLSPVLLNSALLLAAALFYNNATGRRYPHAQHSAA 182 HPP GAVALTAV+GGP +H +G+ +VL PV LNS LLL AL YNNAT R YPHAQ Sbjct: 127 HPPGGAVALTAVIGGPAIHQLGWGYVLMPVGLNSLLLLVVALIYNNATRRPYPHAQQLEP 186 Query: 183 PHP-HQTRDELPITRLGFSHEDLDAVLKDFNQVLDIGRDDLEEIFLQTEMRAYHRRFGQT 241 H+T+D P+ R+GF+H D+DAVLKD+NQVLDI RDDLE +FLQTEM AY RRFG+ Sbjct: 187 ERSLHETQDIPPLARMGFTHADMDAVLKDYNQVLDISRDDLESLFLQTEMHAYRRRFGEI 246 Query: 242 LCAAVMSRDVVAVEFATGLDEAWRLLQEHQLRALPVLDRGRHVIGIVSRTDFLEHAGVEV 301 C +MSR ++ VEF T L+EAW+LL H L+ALPVLD+ R V GI+++ DF+ A + Sbjct: 247 RCQDIMSRSLITVEFGTTLEEAWQLLLRHHLKALPVLDKARRVSGIITQGDFMRQADLAG 306 Query: 302 HTGLAAQLRRLLHRVPFTHSDKPEVVGQIMSRPVITAQVDTPVLELVPRMAD-GLHQIPV 360 + G+A++L++++ R+PFTH+DKPEVVGQIM+ VITA D ++EL+P +++ LH IPV Sbjct: 307 YQGIASKLKQVVQRIPFTHTDKPEVVGQIMTNRVITASTDMHIVELIPLVSEHNLHHIPV 366 Query: 361 VQADGKLVGMLTQSDMIAALYEKNL 385 V + +L GM++QSD+IA LY L Sbjct: 367 VDQERRLAGMISQSDLIAGLYRGRL 391