BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2337.p (362 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775330.1| LacI family transcription regulator protein ... 541 e-152 ref|YP_003774580.1| LacI family transcription regulator protein ... 280 2e-73 ref|YP_550225.1| LacI family transcription regulator [Polaromona... 277 2e-72 ref|YP_004415838.1| LacI family transcription regulator [Pusilli... 275 9e-72 ref|YP_001020165.1| LacI family transcription regulator [Methyli... 268 7e-70 >ref|YP_003775330.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63422.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 541 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 284/339 (83%), Positives = 310/339 (91%) Query: 23 MTRKADPAAAPARAITKEDVARAAGVSHITVSRVINTPEKVSPATRERVESFISSMGYIP 82 M+ K +P A P RA+TKEDVARAAGVSHITVSRVIN+PEKVSPATRERVE+FI+SMGYIP Sbjct: 1 MSHKPEPPAMPTRAVTKEDVARAAGVSHITVSRVINSPEKVSPATRERVEAFIASMGYIP 60 Query: 83 NMLAGGLASRRTRIVAAIVPTISHSIFAETVRGLSEQLSLQGYQLLLGQTNYSEDAETGL 142 N+LAGGLASRRTRIVAAIVPTISHSIFAET+RGLSEQL +QGYQLLLGQTNYSE+AETGL Sbjct: 61 NLLAGGLASRRTRIVAAIVPTISHSIFAETLRGLSEQLCMQGYQLLLGQTNYSEEAETGL 120 Query: 143 VEAFIGRRVDGLVLTGVQHSARTRQRLKAAGIPVVETWDMSPQPIDMLVGFDNHAAGRAM 202 VE FIGRRVDGLVLTGVQHS TRQRLKAAGIPVVETWD++ PIDML GFDNHAAGRAM Sbjct: 121 VEVFIGRRVDGLVLTGVQHSPMTRQRLKAAGIPVVETWDLTDTPIDMLAGFDNHAAGRAM 180 Query: 203 GDYLVRKGYRRMAFVGGDDPRGLARFAGMRDALVAQGAPEPVHQVVAMGSFLQAGRETIC 262 GDYL +KGYRRMAFVGGDDPRG+AR AG+R++L GA EPVH V+ MG+FLQAGRE I Sbjct: 181 GDYLYQKGYRRMAFVGGDDPRGMARVAGLRESLRHHGAAEPVHLVMPMGAFLQAGREAIG 240 Query: 263 RLLALQPDIEAAFFSNDVMAAGAALECARRGIAVPKRIALAGFANLEIATEVLPALTTVQ 322 RLL P+++AAFFSNDV+AAGAALECARRGIAVP RIALAGFANLEIATEVLPALTTVQ Sbjct: 241 RLLTQHPEVDAAFFSNDVIAAGAALECARRGIAVPGRIALAGFANLEIATEVLPALTTVQ 300 Query: 323 ISAHQIGVTAAEMLLTRFDGQPVAQAVCDLGYSVLERDS 361 ISAHQIG+TAAEMLLTRFDG P+ QAV DLGYS+LERDS Sbjct: 301 ISAHQIGLTAAEMLLTRFDGDPLDQAVHDLGYSILERDS 339 >ref|YP_003774580.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62672.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 365 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 162/359 (45%), Positives = 223/359 (62%), Gaps = 15/359 (4%) Query: 18 SPAFPMTRKADPAAAPAR---------AITKEDVARAAGVSHITVSRVINTPEKVSPATR 68 S FP D AA R +T DVA+ AGV+ IT SR +NTP VSP Sbjct: 8 SSEFPAASHQDGDAASPRRRGSRKSAGGVTLRDVAQLAGVAPITASRALNTPSAVSPKVL 67 Query: 69 ERVESFISSMGYIPNMLAGGLASRRTRIVAAIVPTISHSIFAETVRGLSEQLSLQGYQLL 128 ++V + GY+PN+LAGGLAS ++R+VA +VPT+ +F E V L+E L+ GYQ++ Sbjct: 68 QKVREAVEKTGYVPNLLAGGLASNKSRLVAVVVPTVIGPVFQEIVHTLTETLAAAGYQVM 127 Query: 129 LGQTNYSEDAETGLVEAFIGRRVDGLVLTGVQHSARTRQRLKAAGIPVVETWDMSPQPID 188 LGQ+ Y E L+EA IGRR DG+VLTG+ SA R+RL A+GIPVVETWD++P PID Sbjct: 128 LGQSGYENSREDALLEAIIGRRPDGVVLTGIMRSAEARKRLLASGIPVVETWDLTPTPID 187 Query: 189 MLVGFDNHAAGRAMGDYLVRKGYRRMAFVGGDDPRGLARFAGMRDALVAQG-----APEP 243 MLVGF + A GR + YL ++G +++A VGG D R R VA G AP P Sbjct: 188 MLVGFSHEAIGREVARYLHQRGRKKVAVVGGRDERSQRRMNAFAQECVALGMHEGRAPLP 247 Query: 244 VHQVVAMGSFLQAGRETICRLLALQPDIEAAFFSNDVMAAGAALECARRGIAVPKRIALA 303 +H V A + Q GR+ + LL QPD++A F S+D++A G +E RGIA+P+++A+ Sbjct: 248 MHHVTAPTTLGQ-GRQGLAELLQAQPDLDAIFCSSDLLALGVMIEAQSRGIAIPEQLAVV 306 Query: 304 GFANLEIATEVLPALTTVQISAHQIGVTAAEMLLTRFDGQPVAQAVCDLGYSVLERDSA 362 GF +LE + ++ P LTTV+I IG AA ++ R G VA+ V D+G+S++ RDSA Sbjct: 307 GFGDLEFSRDLQPRLTTVRIDGTGIGQRAARFIIDRAAGIEVAERVVDVGFSIIARDSA 365 >ref|YP_550225.1| LacI family transcription regulator [Polaromonas sp. JS666] gb|ABE45327.1| transcriptional regulator, LacI family [Polaromonas sp. JS666] Length = 347 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 154/326 (47%), Positives = 216/326 (66%) Query: 36 AITKEDVARAAGVSHITVSRVINTPEKVSPATRERVESFISSMGYIPNMLAGGLASRRTR 95 A+T DVA+ AGV+ IT SR +NTP +VS ++V + GY+PN LAGGLAS R+R Sbjct: 21 AVTLHDVAKLAGVAPITASRALNTPTQVSAEVLKKVTDAVQRTGYVPNRLAGGLASSRSR 80 Query: 96 IVAAIVPTISHSIFAETVRGLSEQLSLQGYQLLLGQTNYSEDAETGLVEAFIGRRVDGLV 155 +VAA+VPT++ +F ETV+ L++ L+ QGYQL+LGQ+ Y + E L+EA IGRR DG+V Sbjct: 81 LVAAVVPTLNGPVFLETVQALTDALAEQGYQLMLGQSGYVDSREDALLEAIIGRRPDGIV 140 Query: 156 LTGVQHSARTRQRLKAAGIPVVETWDMSPQPIDMLVGFDNHAAGRAMGDYLVRKGYRRMA 215 LTG+ HS R+RL AAGIPVVETWD++P P+DMLVGF + GRA+ D+L +G RR+A Sbjct: 141 LTGIMHSPEGRKRLLAAGIPVVETWDLTPTPLDMLVGFSHVDVGRAVVDFLYARGRRRLA 200 Query: 216 FVGGDDPRGLARFAGMRDALVAQGAPEPVHQVVAMGSFLQAGRETICRLLALQPDIEAAF 275 V GDD R R + A A G PE V + ++GR + L+ DI+A F Sbjct: 201 IVAGDDERSTRRHQAFQAAARAAGLPEVRMVTVPAPTTAKSGRSALAELMRDAGDIDAVF 260 Query: 276 FSNDVMAAGAALECARRGIAVPKRIALAGFANLEIATEVLPALTTVQISAHQIGVTAAEM 335 S+D++A G ++ GIAVP ++A+ GF +LE A ++ PALTTV+I IG AA Sbjct: 261 CSSDLLALGVLMQAQASGIAVPGQLAIVGFGDLEFAADLNPALTTVRIDGTAIGRQAARF 320 Query: 336 LLTRFDGQPVAQAVCDLGYSVLERDS 361 ++ R +G+PV V D+G++++ER S Sbjct: 321 IVERAEGRPVEPRVVDIGFTIVERGS 346 >ref|YP_004415838.1| LacI family transcription regulator [Pusillimonas sp. T7-7] gb|AEC19214.1| LacI family transcription regulator [Pusillimonas sp. T7-7] Length = 343 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 145/326 (44%), Positives = 211/326 (64%) Query: 36 AITKEDVARAAGVSHITVSRVINTPEKVSPATRERVESFISSMGYIPNMLAGGLASRRTR 95 AIT +VAR AGVS IT SRV+NTP++V+ TR++V + GY+PN +AGGLAS R+R Sbjct: 16 AITLREVARLAGVSPITASRVMNTPDQVAQETRQKVLDTVQRTGYVPNRMAGGLASSRSR 75 Query: 96 IVAAIVPTISHSIFAETVRGLSEQLSLQGYQLLLGQTNYSEDAETGLVEAFIGRRVDGLV 155 ++AA+VP+ S+F ET+ L+ L GYQL+LGQT+YS E L+EA IGRR DG+ Sbjct: 76 LIAAVVPSTVMSVFMETIESLNSTLFDAGYQLMLGQTDYSSHREELLLEAIIGRRPDGIF 135 Query: 156 LTGVQHSARTRQRLKAAGIPVVETWDMSPQPIDMLVGFDNHAAGRAMGDYLVRKGYRRMA 215 LTG+ + R RL A+GIP+VETWD++P+PIDMLVGF + G + + +RKG RR+ Sbjct: 136 LTGIMPPGKDRTRLLASGIPIVETWDLTPKPIDMLVGFSHLEIGHEVAHFFIRKGRRRLG 195 Query: 216 FVGGDDPRGLARFAGMRDALVAQGAPEPVHQVVAMGSFLQAGRETICRLLALQPDIEAAF 275 V +D R R + G + V +++GRE + ++LA PD++A F Sbjct: 196 IVQANDERANRRSRAFTEVAAQSGLADVTIVDVGASRSIKSGREALGKMLAETPDVDAIF 255 Query: 276 FSNDVMAAGAALECARRGIAVPKRIALAGFANLEIATEVLPALTTVQISAHQIGVTAAEM 335 S+D++A G E R IA+P+RIA+ GF ++ I +++PAL+TV I+ IG AA Sbjct: 256 CSSDLLALGVMTEARTRQIAIPERIAIMGFGDVAIVADMVPALSTVHINGGNIGKLAARC 315 Query: 336 LLTRFDGQPVAQAVCDLGYSVLERDS 361 L+ R D Q V Q + D+G+S++ER++ Sbjct: 316 LIDRADDQAVDQRIIDVGFSIIERET 341 >ref|YP_001020165.1| LacI family transcription regulator [Methylibium petroleiphilum PM1] gb|ABM93930.1| transcriptional regulator, LacI family [Methylibium petroleiphilum PM1] Length = 347 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 166/346 (47%), Positives = 226/346 (65%), Gaps = 11/346 (3%) Query: 27 ADPAAAPARA-----ITKEDVARAAGVSHITVSRVINTPEKVSPATRERVESFISSMGYI 81 A A AP R+ IT DVAR AGVS IT SR +NTP++V+P RV ++ GY+ Sbjct: 3 APDATAPRRSRRGGGITLGDVARLAGVSPITASRALNTPDQVAPDKLARVREAVARTGYV 62 Query: 82 PNMLAGGLASRRTRIVAAIVPTISHSIFAETVRGLSEQLSLQGYQLLLGQTNYSEDAETG 141 PN LAGGLAS R+R+VAA+VPTI+ +F E V+ L+ L+ GYQL+LGQ+ Y+E E Sbjct: 63 PNRLAGGLASARSRLVAAVVPTIAGPVFMEMVQSLTSALADAGYQLMLGQSGYTESREDA 122 Query: 142 LVEAFIGRRVDGLVLTGVQHSARTRQRLKAAGIPVVETWDMSPQPIDMLVGFDNHAAGRA 201 L+EA IGRR DG+VLTG+ HS R+RL A+GIPVVETWD++P PIDMLVGF + A A Sbjct: 123 LLEAIIGRRPDGIVLTGILHSPEGRRRLLASGIPVVETWDLTPTPIDMLVGFSHAEAAAA 182 Query: 202 MGDYLVRKGYRRMAFVGGDDPRGLARFAG-----MRDALVAQGAPEPVHQVVAMGSFLQA 256 + +L KG RR A + DD R L R G +R LV A P +V A + L + Sbjct: 183 VARHLHAKGRRRPALLSADDERALRRNRGFVDEALRLGLVRDAAEIPALRVPAPTT-LGS 241 Query: 257 GRETICRLLALQPDIEAAFFSNDVMAAGAALECARRGIAVPKRIALAGFANLEIATEVLP 316 GR + RLLA +P+++A F S+D++A G +E A RGIAVP+++A+ GF +L A + P Sbjct: 242 GRSGLARLLAERPEVDAVFCSSDMLALGVLVEAAARGIAVPQQLAVVGFGDLGFAADTQP 301 Query: 317 ALTTVQISAHQIGVTAAEMLLTRFDGQPVAQAVCDLGYSVLERDSA 362 AL+TV+I IG AA ++ R DG+ V + + D+G+ V+ER S+ Sbjct: 302 ALSTVRIDGTGIGQRAARFIVDRADGRTVGEKIVDVGFRVIERGSS 347