BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2336.p (581 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspiril... 721 0.0 ref|YP_004751779.1| hypothetical protein CFU_1124 [Collimonas fu... 402 e-109 ref|ZP_08504044.1| hypothetical protein METUNv1_01065 [Methylove... 323 6e-86 ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium v... 317 3e-84 ref|YP_552717.1| diguanylate cyclase [Burkholderia xenovorans LB... 307 4e-81 >ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63421.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 416/573 (72%), Positives = 491/573 (85%) Query: 1 MSLNRLFRLISVALLALFLAFAVALVWTEWNTYRSGANSVPALRKLRLALLAMEKISAER 60 MSLNRLFRLIS+ALL LFLAFAV+LVWTEWN+YR+GANSVPALR RLAL+A+EK+SAER Sbjct: 1 MSLNRLFRLISIALLLLFLAFAVSLVWTEWNSYRNGANSVPALRTFRLALVALEKLSAER 60 Query: 61 GPANAVMGAGASLPPELQARLATARAQSDAALSQLRAALEADARLRQSWAMDKVRLVQQG 120 GPANA MGA AS + +L ARA++DAAL+ LR AL++ RLRQSW++DKV+ VQQ Sbjct: 61 GPANAFMGASASQREAVADKLKNARAETDAALAALRQALQSHPRLRQSWSLDKVKTVQQA 120 Query: 121 LGPARANVDRVARLAPQDRSDVLVVSAVSSMVDLMPLMVRVVSDLSNEADRADPLLRDGL 180 L PARA +DR+ R +R++V V+SAV MVD++PLM+RV S+LS+E D ADP LR+GL Sbjct: 121 LEPARAAIDRIGRQPEAERNNVYVLSAVGGMVDMIPLMIRVASELSSEVDHADPELREGL 180 Query: 181 SAVRAVASLREYAGQVGSRFVAPLIAHRQLTQDEVIEIGRLYGRIELLRNFIAGQLGSYS 240 +A+RA ASLREYAGQVGSRF LIAHR+LTQDEVIEIGRLYGRIELLR + Q+ SY Sbjct: 181 AAIRAAASLREYAGQVGSRFTPALIAHRKLTQDEVIEIGRLYGRIELLRGLLNTQMASYV 240 Query: 241 RAPEFAAALERVEKEYFDSGFQFLDFLLQIGLKSGDFGVTPTDLFKFYVPSMASITDLRD 300 + PEFA ALE V+K+YFD+GFQFLDFLLQ G+ SGD+G+T DLF+FYVP M SITDLRD Sbjct: 241 QRPEFARALELVDKQYFDNGFQFLDFLLQTGVASGDYGLTSVDLFRFYVPQMKSITDLRD 300 Query: 301 LLLDDLLEQAERHNTRARNLLILVVSLTLVACLFFQMLVVLIGRRVVRPLVQATDLVSGL 360 LLLDD++EQAERHN RARN L+LV+++T+VACLFFQ+L+VLI RRVV+PLV ATDLVSGL Sbjct: 301 LLLDDMMEQAERHNRRARNYLLLVIAVTVVACLFFQVLMVLIRRRVVQPLVLATDLVSGL 360 Query: 361 VDGKLEQEIPEARHQDEIGAMMRALRVLKQRMRERNSLAKEREALITQLQTSSNTDFLTG 420 V+G+L+QEIP+ R++DEI AMMRAL+VL+QRMRERNSLA+EREALITQLQTSSNTDFLTG Sbjct: 361 VEGRLDQEIPQPRYEDEISAMMRALKVLRQRMRERNSLAREREALITQLQTSSNTDFLTG 420 Query: 421 VLNRRAFYTHADQQLGVAQRYRRAVSVVLFDIDHFKRINDSYGHQAGDAILIGVSQCVAQ 480 VLNRRAF+TH QQ+ VA+RY R ++VVLFDIDHFK+INDSYGHQAGDAIL GV+Q V+Q Sbjct: 421 VLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQAGDAILRGVAQSVSQ 480 Query: 481 LLRKVDVLARYGGEEFIILLPESDLAQAAAVADKLRAALEERVFETEGDRRINVTASFGV 540 LLRKVDVLARYGGEEFIILLPES L QAAA ++KLRAAL FE +G RRI VTASFGV Sbjct: 481 LLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFEIDGGRRIRVTASFGV 540 Query: 541 ATLAGGEALDKLTKRADIALYRAKRLGRNRVEL 573 A GG L+ L K+ADIALYRAK+LGRNRVEL Sbjct: 541 AAENGGPGLEHLIKQADIALYRAKKLGRNRVEL 573 >ref|YP_004751779.1| hypothetical protein CFU_1124 [Collimonas fungivorans Ter331] gb|AEK60956.1| hypothetical protein CFU_1124 [Collimonas fungivorans Ter331] Length = 590 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 253/574 (44%), Positives = 341/574 (59%) Query: 1 MSLNRLFRLISVALLALFLAFAVALVWTEWNTYRSGANSVPALRKLRLALLAMEKISAER 60 MSLNRLF LIS+ L+ LFL +V +EW Y S+PA+R L+LALLA EK++AER Sbjct: 5 MSLNRLFWLISILLMLLFLVLIGRIVSSEWAVYERSTKSMPAIRNLQLALLAEEKLAAER 64 Query: 61 GPANAVMGAGASLPPELQARLATARAQSDAALSQLRAALEADARLRQSWAMDKVRLVQQG 120 GP N+++ + A L AR SD AL+ LR AL+ A + + + V +Q Sbjct: 65 GPGNSLLLQEPDAAAKEFAGLDQARFASDRALASLRRALQMQAVPQLAPVIAHVASTEQA 124 Query: 121 LGPARANVDRVARLAPQDRSDVLVVSAVSSMVDLMPLMVRVVSDLSNEADRADPLLRDGL 180 L R +D + L + R V + + M + L++ A R+DP L DGL Sbjct: 125 LATMRKEMDLLLALPVRQRDVAAVDAVLQMMARADSGFAPAIVALADVAVRSDPQLSDGL 184 Query: 181 SAVRAVASLREYAGQVGSRFVAPLIAHRQLTQDEVIEIGRLYGRIELLRNFIAGQLGSYS 240 +SLR AG++G+ F AP+IAHR LT E+ RL G I L + I QL Y Sbjct: 185 EGALLASSLRNIAGRIGAVFTAPVIAHRPLTSQEIYAFSRLSGEISQLYSGIELQLRPYQ 244 Query: 241 RAPEFAAALERVEKEYFDSGFQFLDFLLQIGLKSGDFGVTPTDLFKFYVPSMASITDLRD 300 P AAL+ V Y +G FL+ L IG SGD+G++ ++ YVP MA+I LRD Sbjct: 245 DNPVLKAALDAVRDRYLGAGLGFLNELFAIGRSSGDYGLSAREMVVRYVPRMAAIPHLRD 304 Query: 301 LLLDDLLEQAERHNTRARNLLILVVSLTLVACLFFQMLVVLIGRRVVRPLVQATDLVSGL 360 L+L ++L+QA R N +A L+ L VA F +L+ +I RV+RP++ ATDL L Sbjct: 305 LVLAEMLQQARRQNRQAAFFLVAATVLGAVALAIFVLLMQVIRLRVLRPILDATDLFVSL 364 Query: 361 VDGKLEQEIPEARHQDEIGAMMRALRVLKQRMRERNSLAKEREALITQLQTSSNTDFLTG 420 D + IP RH DEIG MMR + VLK + L K+RE +I QLQT S+TDFLTG Sbjct: 365 ADERFNTVIPMPRHDDEIGVMMRVIHVLKAHSLAKVRLEKQREEMIAQLQTLSDTDFLTG 424 Query: 421 VLNRRAFYTHADQQLGVAQRYRRAVSVVLFDIDHFKRINDSYGHQAGDAILIGVSQCVAQ 480 +LNRRAF+ +QQ G+AQRYRR ++++L D+DHFK +ND YGHQAGD +L V+ + Sbjct: 425 LLNRRAFFAQGEQQFGIAQRYRRQLTLILMDVDHFKTVNDRYGHQAGDQVLRVVADLCRR 484 Query: 481 LLRKVDVLARYGGEEFIILLPESDLAQAAAVADKLRAALEERVFETEGDRRINVTASFGV 540 RKVD+LARYGGEEF+++LPE DL+Q A A+KLR A++ + +G +NVTASFGV Sbjct: 485 HHRKVDLLARYGGEEFLLMLPEIDLSQGFAAAEKLRCAIDSCDCQLDGGEIVNVTASFGV 544 Query: 541 ATLAGGEALDKLTKRADIALYRAKRLGRNRVELA 574 L+ L RAD ALY+AK GRN V A Sbjct: 545 VAFECDNDLESLIGRADQALYQAKHSGRNMVVAA 578 >ref|ZP_08504044.1| hypothetical protein METUNv1_01065 [Methyloversatilis universalis FAM5] gb|EGK72655.1| hypothetical protein METUNv1_01065 [Methyloversatilis universalis FAM5] Length = 578 Score = 323 bits (828), Expect = 6e-86, Method: Composition-based stats. Identities = 220/573 (38%), Positives = 317/573 (55%), Gaps = 3/573 (0%) Query: 1 MSLNRLFRLISVALLALFLAFAVALVWTEWNTYRSGANSVPALRKLRLALLAMEKISAER 60 M L+RLF L+ + L L + +V EW + A+ +LR L+A E S ER Sbjct: 1 MRLHRLFWLVCLLLAVTVLVLSAHIVALEWERADRATRGLEAIERLRHMLVAAEMASRER 60 Query: 61 GPANAVMGAGASLPPELQ-ARLATARAQSDAALSQLRAALEADARLRQSWAMDKVRLVQQ 119 GP+N +MG ++ ARL ARA++DAA S L+ AL+A R + VR + Sbjct: 61 GPSNGLMGDITPGGDAVRLARLDEARARTDAAFSTLQQALDASGHRRDDVSA-AVREAAR 119 Query: 120 GLGPARANVDRVARLAPQDRSDVLVVSAVSSMVDLMPLMVRVVSDLSNEADRADPLLRDG 179 L R + R+A +R + +A+ M ++ + + L NEA A P D Sbjct: 120 DLSAGRGEISRIALQPRSERRADDIKAAIGRMFQVIEDLSPGLMHLMNEAQAAYPRASDA 179 Query: 180 LSAVRAVASLREYAGQVGSRFVAPLIAHRQLTQDEVIEIGRLYGRIELLRNFIAGQLGSY 239 LS R A LRE AG++GS+F L A + L E EI RL GR+E LR + + + Sbjct: 180 LSGARLAAELREQAGRLGSQFTVALTARQPLRDSERTEIERLRGRVEQLRQLLVQRTAAA 239 Query: 240 SRAPEFAAALERVEKEYFDSGFQFLDFLLQIGLKSGDFGVTPTDLFKFYVPSMASITDLR 299 A +R+ YF S F++ L G G++ + YVP M +I +LR Sbjct: 240 PERTAVHGATQRMLVRYFGSAMPFVEALTVRGRSDGEYDIDAAGFAARYVPDMDAIIELR 299 Query: 300 DLLLDDLLEQAERHNTRARNLLILVVSLTLVACLFFQMLVVLIGRRVVRPLVQATDLVSG 359 D+LL+ L +A AR L+ + L A + + ++ RVVRPL + T+L+ Sbjct: 300 DVLLEQALTEARVGAAEARTALVWISGGGLAALGLLGLTLWVVHHRVVRPLEETTELIVA 359 Query: 360 LVDGKLEQEIPEARHQDEIGAMMRALRVLKQRMRERNSLAKEREALITQLQTSSNTDFLT 419 + G LE+ +P RH+DE+ +++A+ VL++ R +L ER+ L+ QL+ SNTDFLT Sbjct: 360 IACGDLERTVPVPRHRDEVADVLKAIGVLRENSVARRALEDERQRLVEQLRDQSNTDFLT 419 Query: 420 GVLNRRAFYTHADQQLGVAQRYRRAVSVVLFDIDHFKRINDSYGHQAGDAILIGVSQCVA 479 G+ NRR F+T A++ L QR+ V++ LFDIDHFK++NDS+GH GD +L V++C Sbjct: 420 GLPNRRGFFTLAERHLPNLQRHGYPVAIALFDIDHFKQVNDSWGHAVGDVVLGEVARCCQ 479 Query: 480 QLLRKVDVLARYGGEEFIILLPESDLAQAAAVADKLRAALEERVFETEGDRRINVTASFG 539 Q R+ DV+ARYGGEEFI+L+P DLA A A A++LR A+E V + + VTASFG Sbjct: 480 QHSRRGDVIARYGGEEFILLMPHCDLASATAQAERLRVAIESTVMQAGDAGGLKVTASFG 539 Query: 540 VAT-LAGGEALDKLTKRADIALYRAKRLGRNRV 571 VA L + LD + RAD LYRAKR GRNRV Sbjct: 540 VAECLLEDDTLDPVIARADACLYRAKREGRNRV 572 >ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium violaceum ATCC 12472] gb|AAQ60916.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 573 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 214/571 (37%), Positives = 324/571 (56%), Gaps = 8/571 (1%) Query: 5 RLFRLISVALLALFLAFAVALVWT---EWNTYRSGANSVPALRKLRLALLAMEKISAERG 61 RL ++ +V L LF+ + L W EW YR+ + +++ LA++A+EKIS ERG Sbjct: 2 RLSKIFTVVTLVLFVLACLPLAWIVNGEWAVYRAADEGLASIQIAHLAMVAVEKISFERG 61 Query: 62 PANAVMGAGASLPPELQARLATARAQSDAALSQLRAALEADARLRQSWAMDKVRLVQQGL 121 PAN ++G+ A + + RL AR SD AL L +AL + A+ VR +Q L Sbjct: 62 PANVLIGSPAD--QDARERLRRARQTSDRALQDLVSALSPSSSAYHRQALAAVRSARQRL 119 Query: 122 GPARANVDRVARLAPQDRSDVLVVSAVSSMVDLMPLMVRVVSDLSNEADRADPLLRDGLS 181 AR +DRV +A + ++ ++ M D++P ++ V+ LS++A P L LS Sbjct: 120 SEARLGMDRV--IASPRPASAGIMPSIRRMFDVVPAILEAVTALSSQASSVYPQLSHPLS 177 Query: 182 AVRAVASLREYAGQVGSRFVAPLIAHRQLTQDEVIEIGRLYGRIELLRNFIAGQLGSYSR 241 R LREYAG++GS L R L + E +I L GRIE LR I +L + S Sbjct: 178 GARMATELREYAGRLGSTLTPALAEQRPLAESETRDIHILRGRIEQLRGTILQRLNAPSL 237 Query: 242 APEFAAALERVEKEYFDSGFQFLDFLLQIGLKSGDFGVTPTDLFKFYVPSMASITDLRDL 301 P A+ +E YF G +D +L + V+ + YVP++ SI +LRD Sbjct: 238 QPGPRQAVGDMESLYFREGLAQVDDILLDSHLGRPYRVSLAEFTAGYVPTLYSIVELRDA 297 Query: 302 LLDDLLEQAERHNTRARNLLILVVSLTLVACLFFQMLVVLIGRRVVRPLVQATDLVSGLV 361 +L E+A + A L+ ++L +VA + L I + RPL+ A+ L+S L Sbjct: 298 MLTAAAEEARVQRSAAFRHLLGTIALGVVALIAQLALFAYIRWLIARPLLAASRLLSDLA 357 Query: 362 DGKLEQEIPEARHQDEIGAMMRALRVLKQRMRERNSLAKEREALITQLQTSSNTDFLTGV 421 DGKL+ +IP++ +DEIG ++RA+ +L++ +E+ +L ER+ LI +L S DFLTG+ Sbjct: 358 DGKLDADIPDSHRKDEIGDVLRAIAILRRNSQEKRALEHERQRLIDELTEMSRIDFLTGI 417 Query: 422 LNRRAFYTHADQQLGVAQRYRRAVSVVLFDIDHFKRINDSYGHQAGDAILIGVSQCVAQL 481 NRRAF A ++ A R + +++LFDIDHFK++ND YGH GDA+L+ V+ V ++ Sbjct: 418 TNRRAFTQAAHAEIARAGLARESATLILFDIDHFKQVNDLYGHDCGDAVLVHVAAIVERV 477 Query: 482 LRKVDVLARYGGEEFIILLPESDLAQAAAVADKLRAALEERVFETEGDRRINVTASFGVA 541 R+ D+ RYGGEEF++L + A+A++LRAA+ E +++ VTASFGVA Sbjct: 478 CREGDLAGRYGGEEFVVLACYRGASNGEALAERLRAAIAESPCLLPSGQKLAVTASFGVA 537 Query: 542 TLA-GGEALDKLTKRADIALYRAKRLGRNRV 571 TL +L++L + AD ALY AKRLGRNRV Sbjct: 538 TLGEAAPSLERLLQAADRALYAAKRLGRNRV 568 >ref|YP_552717.1| diguanylate cyclase [Burkholderia xenovorans LB400] gb|ABE33367.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 591 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 206/573 (35%), Positives = 309/573 (53%), Gaps = 4/573 (0%) Query: 1 MSLNRLFRLISVALLALFLAFAVALVWTEWNTYRSGANSVPALRKLRLALLAMEKISAER 60 MS++R F + A L L LV EW+ Y +++ A + R LLA+E +SAER Sbjct: 9 MSIDRRFGISVAAALLPVLLLCGRLVVHEWHAYMVADDALYAFQTYRAGLLAIESVSAER 68 Query: 61 GPANAVMGAGASLPPELQARLATARAQSDAALSQLRAALEADARLRQSWAMDKVRLVQQG 120 GP N+V+G +P +A L AR +SDA + +L L++ + + ++ + Sbjct: 69 GPTNSVLGENLPIPEARRASLLRARGESDARIEKLLEMLQSSRCPGCATELARIENARAE 128 Query: 121 LGPARANVDRVARLAPQDRSDVLVVSAVSSMVDLMPLMVRVVSDLSNEADRADPLLRDGL 180 L ARANVD++ L R + + SAV M+ ++P V+ L+ R D + L Sbjct: 129 LTGARANVDQLIGLPLAQRRERALSSAVDRMIKVIPQFSPVIDALAANVVRGDTRALNCL 188 Query: 181 SAVRAVASLREYAGQVGSRFVAPLIAHRQLTQDEVIEIGRLYGRIELLRNFIAGQLGSYS 240 A LRE AGQ+GS F A L A R L + + + I R GRI+ LR I + Sbjct: 189 ILATLTADLREAAGQLGSHFTAALTARRALGEGDQLAIERTEGRIDQLRELIDSHI--RD 246 Query: 241 RAPEFAAALERVEKEYFDSGFQFLDFLLQIGLKSGDFGVTPTDLFKFYVPSMASITDLRD 300 R+ +A +R+ ++YF G ++ + + + G ++P L YVP M IT RD Sbjct: 247 RSMLESAPFDRMNRQYFGEGMAYITDVRSLATRPGGVAISPAQLADHYVPMMRPITAFRD 306 Query: 301 LLLDDLLEQAERHNTRARNLLILVVSLTLVACLFFQMLVVLIGRRVVRPLVQATDLVSGL 360 +LD + H + A LL + + + + +L RRV+RPLV AT ++ + Sbjct: 307 QVLDLADTEIRFHRSNALGLLAVSALAAFLLIMILLSMAMLFRRRVIRPLVDATHVIGAI 366 Query: 361 VDGKLEQEIPEARHQDEIGAMMRALRVLKQRMRERNSLAKEREALITQLQTSSNTDFLTG 420 +G L EIP AR++ EI AM A+ VLK ER L +ER LI +L+ ++ TDFLT Sbjct: 367 ANGDLTAEIPAARYRGEIKAMFNAIGVLKANSVERQQLERERGRLIQELKATAETDFLTH 426 Query: 421 VLNRRAFYTHADQQLGVAQRYRRAVSVVLFDIDHFKRINDSYGHQAGDAILIGVSQCVAQ 480 +LNRRAF + A +++++FDIDHFK+IND+YGH GD L V++ + Sbjct: 427 LLNRRAFESRARLSCAERNAAEPELALIMFDIDHFKKINDTYGHATGDHALQLVARLCRE 486 Query: 481 LLRKVDVLARYGGEEFIILLPESDLAQAAAVADKLRAALEERVFETEGDRRINVTASFGV 540 R+ DV+AR+GGEEF +L D AQA AVA++LR + E G N+TASFGV Sbjct: 487 TCRQADVVARWGGEEFAVLSRVQDAAQALAVAERLRCRIRETRIPVSGGDGFNITASFGV 546 Query: 541 ATLAGGEA--LDKLTKRADIALYRAKRLGRNRV 571 A + ++ +D+L +RAD LY+AK GR+R+ Sbjct: 547 AFASACDSRDVDRLFRRADRLLYQAKEAGRDRI 579