BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2334.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775327.1| seryl-tRNA synthetase [Herbaspirillum serope... 843 0.0 ref|YP_001352847.1| seryl-tRNA synthetase [Janthinobacterium sp.... 756 0.0 ref|YP_001099331.1| seryl-tRNA synthetase [Herminiimonas arsenic... 747 0.0 ref|YP_004753331.1| seryl-tRNA synthetase [Collimonas fungivoran... 733 0.0 ref|ZP_08275424.1| Seryl-tRNA synthetase [Oxalobacteraceae bacte... 714 0.0 >ref|YP_003775327.1| seryl-tRNA synthetase [Herbaspirillum seropedicae SmR1] emb|CAM32540.1| Seryl-tRNA synthetase [Herbaspirillum seropedicae] gb|ADJ63419.1| seryl-tRNA synthetase [Herbaspirillum seropedicae SmR1] Length = 433 Score = 843 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 422/433 (97%), Positives = 426/433 (98%) Query: 1 MIDIQLLRKDIENVAARLAARKFVLDVAGFNALEAERKQIQTRTEELQGKRNSLSKQIGM 60 MIDIQLLRKDIENVAARLAARKFVLDVAGFNALEAERKQIQTRTEELQGKRNSLSKQIGM Sbjct: 1 MIDIQLLRKDIENVAARLAARKFVLDVAGFNALEAERKQIQTRTEELQGKRNSLSKQIGM 60 Query: 61 LKGKGEDASAVMAEVNGIGDELKASATRLEEVQQQMTLFLQAVPNLPHESVPAGNDESGN 120 LKGK EDASAVMAEVNGIGDELKASATRLEEVQQQM LFLQAVPNLPHESVP GNDESGN Sbjct: 61 LKGKCEDASAVMAEVNGIGDELKASATRLEEVQQQMNLFLQAVPNLPHESVPVGNDESGN 120 Query: 121 VELRKVGTPRSFDFEIKDHVDVGAPLGLDFDTATKLTGSRFAVLKGGIARLHRALAQFML 180 VELRKVGTPR FDFEIKDHVDVGA LGLDFDTATKLTGSRFAVLKGGIARLHRALAQFML Sbjct: 121 VELRKVGTPRQFDFEIKDHVDVGAALGLDFDTATKLTGSRFAVLKGGIARLHRALAQFML 180 Query: 181 NTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGEAENAALYLIPTAE 240 NTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGEAENAALYLIPTAE Sbjct: 181 NTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGEAENAALYLIPTAE 240 Query: 241 VPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHPE 300 VPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHPE Sbjct: 241 VPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHPE 300 Query: 301 KSYEALDEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVWLPAQNTYREISSV 360 +SY+ALDEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVWLPAQ TYREISSV Sbjct: 301 QSYDALDEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVWLPAQKTYREISSV 360 Query: 361 SNCEAFQARRMQARFRNAQGKPELLHTLNGSGLAVGRTLVAVLENYQQADGSVEIPEVLQ 420 SNCEAFQARRMQARFRNAQGKPELLHTLNGSGLAVGRTLVAVLENYQQADGSV+IPE LQ Sbjct: 361 SNCEAFQARRMQARFRNAQGKPELLHTLNGSGLAVGRTLVAVLENYQQADGSVDIPEALQ 420 Query: 421 PYMGGVTKLVPGA 433 PYMGGVT+LVPGA Sbjct: 421 PYMGGVTRLVPGA 433 >ref|YP_001352847.1| seryl-tRNA synthetase [Janthinobacterium sp. Marseille] sp|A6SX50|SYS_JANMA RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase gb|ABR89147.1| Seryl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 431 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 373/433 (86%), Positives = 399/433 (92%), Gaps = 2/433 (0%) Query: 1 MIDIQLLRKDIENVAARLAARKFVLDVAGFNALEAERKQIQTRTEELQGKRNSLSKQIGM 60 MIDIQLLRKDI++VAARLA RKF LDVA FNALEAERKQIQ+ TE+LQ KRN+LSKQIG Sbjct: 1 MIDIQLLRKDIDSVAARLAGRKFKLDVAAFNALEAERKQIQSSTEDLQNKRNTLSKQIGA 60 Query: 61 LKGKGEDASAVMAEVNGIGDELKASATRLEEVQQQMTLFLQAVPNLPHESVPAGNDESGN 120 LKGKGED SAVMAEV GIGDELKASA RL+ VQ +++ F+ ++PNLPHESVP G DE+GN Sbjct: 61 LKGKGEDTSAVMAEVAGIGDELKASAARLDIVQAKISEFMLSIPNLPHESVPVGTDEAGN 120 Query: 121 VELRKVGTPRSFDFEIKDHVDVGAPLGLDFDTATKLTGSRFAVLKGGIARLHRALAQFML 180 VELRKVGTPRSFDFEI+DHVDVGA LGLDFD A K+TGSRF+V+KGGIARLHRALAQFML Sbjct: 121 VELRKVGTPRSFDFEIRDHVDVGAALGLDFDVAAKITGSRFSVMKGGIARLHRALAQFML 180 Query: 181 NTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGEAENAALYLIPTAE 240 +THT EHGYTECYTPYIVNADSL+GTGQLPKFEADLFA KKGGQEGE E ALYLIPTAE Sbjct: 181 DTHTAEHGYTECYTPYIVNADSLQGTGQLPKFEADLFAVKKGGQEGEGE--ALYLIPTAE 238 Query: 241 VPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHPE 300 VPLTN VRDEIVAGDALP++ TAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQ+VHPE Sbjct: 239 VPLTNIVRDEIVAGDALPIRMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVHPE 298 Query: 301 KSYEALDEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVWLPAQNTYREISSV 360 KSYEALDEM GHAE ILKKLGLPYRVITLCTGDMGFGA KTYD+EVWLPAQNTYREISSV Sbjct: 299 KSYEALDEMCGHAENILKKLGLPYRVITLCTGDMGFGATKTYDLEVWLPAQNTYREISSV 358 Query: 361 SNCEAFQARRMQARFRNAQGKPELLHTLNGSGLAVGRTLVAVLENYQQADGSVEIPEVLQ 420 SNCEAFQARRMQARFRNAQGKPE +HTLNGSGLAVGRTLVAVLENYQQADGSV IPEVL Sbjct: 359 SNCEAFQARRMQARFRNAQGKPESVHTLNGSGLAVGRTLVAVLENYQQADGSVTIPEVLH 418 Query: 421 PYMGGVTKLVPGA 433 PYMGG+ +L P A Sbjct: 419 PYMGGLQRLTPQA 431 >ref|YP_001099331.1| seryl-tRNA synthetase [Herminiimonas arsenicoxydans] sp|A4G3W7|SYS_HERAR RecName: Full=Seryl-tRNA synthetase; AltName: Full=Serine--tRNA ligase; Short=SerRS; AltName: Full=Seryl-tRNA(Ser/Sec) synthetase emb|CAL61204.1| serine tRNA synthetase (Serine--tRNA ligase) (SerRS) [Herminiimonas arsenicoxydans] Length = 431 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 369/433 (85%), Positives = 397/433 (91%), Gaps = 2/433 (0%) Query: 1 MIDIQLLRKDIENVAARLAARKFVLDVAGFNALEAERKQIQTRTEELQGKRNSLSKQIGM 60 MIDIQLLRKDIE VAARLA RKF LDV FNALEAERKQIQ+ TEELQ +RN+LSKQIG Sbjct: 1 MIDIQLLRKDIETVAARLAGRKFQLDVNTFNALEAERKQIQSGTEELQNRRNTLSKQIGA 60 Query: 61 LKGKGEDASAVMAEVNGIGDELKASATRLEEVQQQMTLFLQAVPNLPHESVPAGNDESGN 120 LKGKGED SAVMAEV GIGDELKASA RL+ +Q +++ F+ A+PNLPHESVP G DE N Sbjct: 61 LKGKGEDTSAVMAEVAGIGDELKASAARLDVLQAEISKFMLAIPNLPHESVPVGKDEEDN 120 Query: 121 VELRKVGTPRSFDFEIKDHVDVGAPLGLDFDTATKLTGSRFAVLKGGIARLHRALAQFML 180 VELRKVGTPR+FDFE++DHVD+GA LGLDFD A K+TGSRF+V+KGGIARLHRALAQFML Sbjct: 121 VELRKVGTPRAFDFEVRDHVDIGAALGLDFDVAAKITGSRFSVMKGGIARLHRALAQFML 180 Query: 181 NTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGEAENAALYLIPTAE 240 +THT EHGYTECYTPYIVNADSL+GTGQLPKFEADLFA KKGGQEGE E ALYLIPTAE Sbjct: 181 DTHTEEHGYTECYTPYIVNADSLQGTGQLPKFEADLFAVKKGGQEGEGE--ALYLIPTAE 238 Query: 241 VPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHPE 300 VPLTN VRDEI+A DALP++ TAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQ+VHPE Sbjct: 239 VPLTNIVRDEILAADALPVRMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVHPE 298 Query: 301 KSYEALDEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVWLPAQNTYREISSV 360 KSYEALDEM GHAE ILKKLGLPYRVITLCTGDMGFGA+KTYD+EVWLPAQNTYREISSV Sbjct: 299 KSYEALDEMCGHAENILKKLGLPYRVITLCTGDMGFGASKTYDLEVWLPAQNTYREISSV 358 Query: 361 SNCEAFQARRMQARFRNAQGKPELLHTLNGSGLAVGRTLVAVLENYQQADGSVEIPEVLQ 420 SNCEAFQARRMQARFRNAQGKPEL HTLNGSGLAVGRTLVAVLENYQQADGSV IPEVL Sbjct: 359 SNCEAFQARRMQARFRNAQGKPELTHTLNGSGLAVGRTLVAVLENYQQADGSVIIPEVLH 418 Query: 421 PYMGGVTKLVPGA 433 PYMGG+T+L+P A Sbjct: 419 PYMGGLTRLLPQA 431 >ref|YP_004753331.1| seryl-tRNA synthetase [Collimonas fungivorans Ter331] gb|AEK62508.1| Seryl-tRNA synthetase [Collimonas fungivorans Ter331] Length = 449 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 364/431 (84%), Positives = 394/431 (91%), Gaps = 2/431 (0%) Query: 1 MIDIQLLRKDIENVAARLAARKFVLDVAGFNALEAERKQIQTRTEELQGKRNSLSKQIGM 60 MIDIQLLRKDI + A RLA RKF LDV FNALEAERKQIQTRTEELQG+RNSLSKQIGM Sbjct: 16 MIDIQLLRKDIASAADRLATRKFKLDVNSFNALEAERKQIQTRTEELQGQRNSLSKQIGM 75 Query: 61 LKGKGEDASAVMAEVNGIGDELKASATRLEEVQQQMTLFLQAVPNLPHESVPAGNDESGN 120 LKG+GEDASAVMAEV GIGDELKASAT+L+ VQ+Q++ FL +VPN+PHESVP G DE+ N Sbjct: 76 LKGRGEDASAVMAEVAGIGDELKASATKLDLVQEQVSAFLLSVPNIPHESVPVGADEAAN 135 Query: 121 VELRKVGTPRSFDFEIKDHVDVGAPLGLDFDTATKLTGSRFAVLKGGIARLHRALAQFML 180 VE+RKVGTP SF FE++DHVDVGA LGLDFDTA K+TGSRF VLKGGIARLHRAL QFML Sbjct: 136 VEVRKVGTPPSFGFEVRDHVDVGAALGLDFDTAAKITGSRFVVLKGGIARLHRALGQFML 195 Query: 181 NTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGE--AENAALYLIPT 238 +TH EHGYTECYTPYIVNADSLRGTGQLPKFE DLFA KKGGQEGE A+ AALYLIPT Sbjct: 196 DTHGAEHGYTECYTPYIVNADSLRGTGQLPKFEEDLFAVKKGGQEGEQGADAAALYLIPT 255 Query: 239 AEVPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVH 298 AEVPLTN VRDEIVAG+ LP+K AHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVH Sbjct: 256 AEVPLTNIVRDEIVAGETLPIKMAAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVH 315 Query: 299 PEKSYEALDEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVWLPAQNTYREIS 358 PEKSYE L+EM+GHAE ILKKLGLPYRV++LCTGD+GFGAAKTYD+EVWLPAQNTYREIS Sbjct: 316 PEKSYEVLEEMVGHAENILKKLGLPYRVVSLCTGDIGFGAAKTYDLEVWLPAQNTYREIS 375 Query: 359 SVSNCEAFQARRMQARFRNAQGKPELLHTLNGSGLAVGRTLVAVLENYQQADGSVEIPEV 418 SVSN EAFQARR+QARFRNAQGK EL+HTLNGSGLAVGRTLVA+LEN+QQADGSVEIP V Sbjct: 376 SVSNFEAFQARRLQARFRNAQGKTELVHTLNGSGLAVGRTLVAILENFQQADGSVEIPAV 435 Query: 419 LQPYMGGVTKL 429 L PYMGG+TKL Sbjct: 436 LHPYMGGITKL 446 >ref|ZP_08275424.1| Seryl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31113.1| Seryl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 431 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 344/432 (79%), Positives = 387/432 (89%), Gaps = 2/432 (0%) Query: 1 MIDIQLLRKDIENVAARLAARKFVLDVAGFNALEAERKQIQTRTEELQGKRNSLSKQIGM 60 MIDIQLLRKDI++VAARLA RKFVLDVAGFN LE ERKQIQ R E+LQGKRN+LSKQIG+ Sbjct: 1 MIDIQLLRKDIDSVAARLATRKFVLDVAGFNLLEGERKQIQIRAEDLQGKRNALSKQIGI 60 Query: 61 LKGKGEDASAVMAEVNGIGDELKASATRLEEVQQQMTLFLQAVPNLPHESVPAGNDESGN 120 LKGKGED+SAVMAEV GI DELK+SA RLE VQ Q++ F+ +PNLPHES P G +E+ N Sbjct: 61 LKGKGEDSSAVMAEVAGIADELKSSADRLEAVQLQLSEFMLQIPNLPHESTPVGKEEADN 120 Query: 121 VELRKVGTPRSFDFEIKDHVDVGAPLGLDFDTATKLTGSRFAVLKGGIARLHRALAQFML 180 VE+R+VG PR+ DF + DHVD+GAPLGLDFD A KLTGSRF+V+KGGIARLHRALAQFML Sbjct: 121 VEVRRVGVPRNVDFTVLDHVDIGAPLGLDFDVAVKLTGSRFSVMKGGIARLHRALAQFML 180 Query: 181 NTHTMEHGYTECYTPYIVNADSLRGTGQLPKFEADLFAAKKGGQEGEAENAALYLIPTAE 240 +THT EHGYTECYTPYIVNADSLRGTGQLPKFEA+LFA KKGGQEGE E LYLIPT+E Sbjct: 181 DTHTGEHGYTECYTPYIVNADSLRGTGQLPKFEAELFAVKKGGQEGEGE--TLYLIPTSE 238 Query: 241 VPLTNFVRDEIVAGDALPMKFTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHPE 300 V LTN VRD+I+A D LP+K TAH+PCFRSEAGSYGRDTRGMIRQHQFDKVEMVQ+VHPE Sbjct: 239 VSLTNIVRDQIIAIDDLPVKMTAHTPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVHPE 298 Query: 301 KSYEALDEMLGHAETILKKLGLPYRVITLCTGDMGFGAAKTYDIEVWLPAQNTYREISSV 360 +S+ L+EM+GHAE IL+KLGLPYRV++LCTGD+GF A KTYDIEVWLPAQ TYREISS+ Sbjct: 299 QSFAVLEEMVGHAEVILQKLGLPYRVVSLCTGDIGFSATKTYDIEVWLPAQKTYREISSL 358 Query: 361 SNCEAFQARRMQARFRNAQGKPELLHTLNGSGLAVGRTLVAVLENYQQADGSVEIPEVLQ 420 SNC++FQARRMQ RFRNAQGKPELLHTLNGSGLAVGRTLVAVLEN+QQADGSV+IPEVL Sbjct: 359 SNCDSFQARRMQTRFRNAQGKPELLHTLNGSGLAVGRTLVAVLENFQQADGSVDIPEVLW 418 Query: 421 PYMGGVTKLVPG 432 YMGG+ +LVP Sbjct: 419 NYMGGLKRLVPA 430