BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2333.p         (207 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775326.1| hypothetical protein Hsero_1909 [Herbaspiril...   335   4e-90
ref|ZP_05055825.1| hypothetical protein VDG1235_582 [Verrucomicr...    61   8e-08

>ref|YP_003775326.1| hypothetical protein Hsero_1909 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63418.1| hypothetical protein Hsero_1909 [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  335 bits (858), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 170/207 (82%), Positives = 186/207 (89%)

Query: 1   MSVQPESRPPREVPVLFSLLGLVAALAVGLWAGIHYMSNEASLFYGLIAGLSFGATFAFG 60
           MS   + R PR+VPVLFSLLGLVAA A+GLWAGIHYMSN+ASLFYGLIAGLSFGA FAFG
Sbjct: 51  MSAPQDPRAPRDVPVLFSLLGLVAAFALGLWAGIHYMSNDASLFYGLIAGLSFGAAFAFG 110

Query: 61  QQIKNRLVPPKVRKTDWKVQAPGAAELSPTRVAAQQARKISVEFDDEEIRTMVRGAKREG 120
           QQIKNR VPPK RK+DWKVQAPGAAELSP R+AAQQARKISVEFDDEEIRTMVRGAKREG
Sbjct: 111 QQIKNRFVPPKARKSDWKVQAPGAAELSPARLAAQQARKISVEFDDEEIRTMVRGAKREG 170

Query: 121 IAWSAIDDVTIRISEDALPQPQWILAGKSAEGIKGVLVPNDADGLEALMEGMKTRLPGYD 180
           IAW+ + DVTIRISE  LPQP+WIL+G+SAEGIKG+LVPNDADGLE LM+ MK RLPGYD
Sbjct: 171 IAWAEVKDVTIRISEGHLPQPEWILSGQSAEGIKGILVPNDADGLEELMQAMKQRLPGYD 230

Query: 181 DDKNYETVIAAMSAMEGSFHIWHRPAA 207
           +D+NY TVIAAMSAMEGSFH+W R  A
Sbjct: 231 NDQNYSTVIAAMSAMEGSFHVWSRQPA 257


>ref|ZP_05055825.1| hypothetical protein VDG1235_582 [Verrucomicrobiae bacterium
           DG1235]
 gb|EDY80965.1| hypothetical protein VDG1235_582 [Verrucomicrobiae bacterium
           DG1235]
          Length = 146

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 98  RKISVEFDDEEIRTMVRGAKREGIAWSAIDDVTIRISEDA--LPQPQWILAGKSAEGIKG 155
           RK  V FDDE+I+       +E I W  +  VTI  +++   LP   WIL GK+ E   G
Sbjct: 25  RKTIVTFDDEQIQVQQSNGNKEQIRWKDLLAVTIETTDEGPFLPDVFWILVGKNME--SG 82

Query: 156 VLVPNDADGLEALMEGMKTRLPGYDDDKNYETVIAAMSAMEGS-FHIWHR 204
            + P D+ G   L+E ++ RLP +D+    E  I AM + + + F +W +
Sbjct: 83  CVFPQDSTGDSDLIEELQKRLPDFDN----EQFIEAMRSTDNNRFVVWKK 128