BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2332.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775325.1| LysR family transcription regulator protein ... 549 e-154 ref|YP_047311.1| transcriptional regulator [Acinetobacter sp. AD... 451 e-125 ref|YP_001629948.1| LysR family transcriptional regulator [Borde... 449 e-124 ref|YP_002986249.1| LysR family transcriptional regulator [Dicke... 446 e-123 ref|ZP_04662884.1| LysR substrate binding domain protein [Acinet... 438 e-121 >ref|YP_003775325.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63417.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 315 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 283/313 (90%), Positives = 298/313 (95%) Query: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTR 60 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSA SRAIARLEKALGTQLLQRTTR Sbjct: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTR 60 Query: 61 KLRLSASGEEIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVSVPKAVGHALVHPHMPDF 120 KLRLS SG++IHARCRDMLNAAQAVLAVS AFDAEPQGQVRVSVPKAVGHALVHPH+PDF Sbjct: 61 KLRLSESGQDIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDF 120 Query: 121 LASYPEVDVLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAA 180 LA++P+VDVLLRLEDRYMDLIDD+VDLAIRITD PPPGLMGRRLMRIDHLLCATP YLA Sbjct: 121 LAAHPKVDVLLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLAT 180 Query: 181 HGTPTHPQALKAHSCIYLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDATLRHV 240 HGTP HPQALK HSCIYLGE+PADA+WRFRR GK+V+VEVRGRYAANHTGVRLDA LRH+ Sbjct: 181 HGTPAHPQALKEHSCIYLGESPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRHL 240 Query: 241 GIASLPYFIARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLGAFVNFLAQR 300 GIASLPYFIARPALEEG LVQVLPQWSF+T YCGELWALYPATRHLPPRLGAFV FLAQR Sbjct: 241 GIASLPYFIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQR 300 Query: 301 LAEEPTLDGAGRA 313 LA+EPTL G G+A Sbjct: 301 LAQEPTLAGGGKA 313 >ref|YP_047311.1| transcriptional regulator [Acinetobacter sp. ADP1] emb|CAG69489.1| putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 318 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 211/307 (68%), Positives = 254/307 (82%) Query: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTR 60 MSTNQ I LL EMA+F KVVETGSFSE +RQ+G+TPSA SRAI+RLEKALGT+LLQRTTR Sbjct: 1 MSTNQGIHLLQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTR 60 Query: 61 KLRLSASGEEIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVSVPKAVGHALVHPHMPDF 120 KLRLS SG++I+ C DM+NAAQAV+ S F AEPQG VR+SVPKAVGH ++HPHMP+F Sbjct: 61 KLRLSESGQQIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEF 120 Query: 121 LASYPEVDVLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAA 180 L YP++DV + LEDRY+D IDD VDLAIRITD+PP GLMGRRL+ I HLLCATP YLA Sbjct: 121 LQRYPKIDVQMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAM 180 Query: 181 HGTPTHPQALKAHSCIYLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDATLRHV 240 HGTP HP LK H+CIYLGE P+D++W+F++ K++ V V+GRY+ANHTG+RLDA L+H+ Sbjct: 181 HGTPEHPHDLKQHACIYLGEQPSDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHL 240 Query: 241 GIASLPYFIARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLGAFVNFLAQR 300 GIASLPYF+AR ALE G L+QVLP W FKT Y G+ W LYP TRHLPP+L + FLA++ Sbjct: 241 GIASLPYFVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLAEK 300 Query: 301 LAEEPTL 307 LA+EP L Sbjct: 301 LAQEPNL 307 >ref|YP_001629948.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP41678.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 328 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 220/312 (70%), Positives = 255/312 (81%) Query: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTR 60 MSTN+ IAL+ EMAVF KVVETGSFSE ARQLGATPSA SR++ARLEKALGT+LLQRTTR Sbjct: 1 MSTNKMIALMGEMAVFVKVVETGSFSETARQLGATPSAISRSVARLEKALGTRLLQRTTR 60 Query: 61 KLRLSASGEEIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVSVPKAVGHALVHPHMPDF 120 KLRLS G E+HARC DM++AAQAVL VS F EPQG VRVSVPKAVG ++HPH+PDF Sbjct: 61 KLRLSEGGHEVHARCLDMVSAAQAVLEVSGQFSPEPQGLVRVSVPKAVGRFVIHPHIPDF 120 Query: 121 LASYPEVDVLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAA 180 LA YP+VDV L+L DRY+DLIDD+VDLAIRITD+P PGLMGRRL+ IDH+LCATP YLA Sbjct: 121 LARYPKVDVQLQLNDRYVDLIDDEVDLAIRITDRPSPGLMGRRLVDIDHMLCATPEYLAN 180 Query: 181 HGTPTHPQALKAHSCIYLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDATLRHV 240 G P HP LKAH+C++LGE P D++W+F R K V V V GRYA NHTG RLDA L H+ Sbjct: 181 RGMPAHPHDLKAHTCVFLGEEPGDSRWKFLRGDKRVSVSVHGRYAVNHTGARLDAVLHHL 240 Query: 241 GIASLPYFIARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLGAFVNFLAQR 300 GI SLPYF AR AL++G++VQVLP+W FKT YCGE W LYP RHLPP+L AF+NF+A+R Sbjct: 241 GIGSLPYFTARHALQQGQIVQVLPEWEFKTNYCGEAWILYPPNRHLPPKLSAFINFMAER 300 Query: 301 LAEEPTLDGAGR 312 L+ EPTL R Sbjct: 301 LSGEPTLSRPAR 312 >ref|YP_002986249.1| LysR family transcriptional regulator [Dickeya dadantii Ech703] gb|ACS84427.1| transcriptional regulator, LysR family [Dickeya dadantii Ech703] Length = 320 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 211/309 (68%), Positives = 251/309 (81%) Query: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTR 60 M TN+ + LL EMAVFAKVVETGSFSEAARQLGATPSA SR+I RLEKAL T+LLQRTTR Sbjct: 8 MFTNKELGLLEEMAVFAKVVETGSFSEAARQLGATPSAISRSINRLEKALNTRLLQRTTR 67 Query: 61 KLRLSASGEEIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVSVPKAVGHALVHPHMPDF 120 KLRLS SG+ I+ C++M+N A A ++ S F+ P G VR+SVPKAVGH L+HPH+PDF Sbjct: 68 KLRLSDSGQVIYQHCQNMVNEALAAISTSGVFNDAPAGIVRLSVPKAVGHFLIHPHIPDF 127 Query: 121 LASYPEVDVLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAA 180 L YP+VD+++RLEDRYMDLIDDQ+D+AIRIT++PPPGLMGR+L IDH+LCATPAYL Sbjct: 128 LEQYPKVDIVMRLEDRYMDLIDDQIDVAIRITNQPPPGLMGRKLTTIDHVLCATPAYLEK 187 Query: 181 HGTPTHPQALKAHSCIYLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDATLRHV 240 G P HP LK H CIYLGE P DA+W+F R K V V V GRYAANHTGVRLDA RH+ Sbjct: 188 QGIPQHPHDLKQHCCIYLGETPGDARWKFSRENKTVSVAVHGRYAANHTGVRLDAIRRHI 247 Query: 241 GIASLPYFIARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLGAFVNFLAQR 300 GI SLP+F AR ALE+G +VQVLP+W+FKT Y GE+W LYP TRHLPPR+ A + FL+++ Sbjct: 248 GIGSLPWFTAREALEQGDIVQVLPEWNFKTDYSGEIWLLYPPTRHLPPRISALIGFLSEQ 307 Query: 301 LAEEPTLDG 309 LA+EPTL G Sbjct: 308 LAKEPTLLG 316 >ref|ZP_04662884.1| LysR substrate binding domain protein [Acinetobacter baumannii AB900] Length = 311 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 206/307 (67%), Positives = 252/307 (82%) Query: 1 MSTNQSIALLNEMAVFAKVVETGSFSEAARQLGATPSATSRAIARLEKALGTQLLQRTTR 60 MSTNQS+ LLNEMA F KVVE+ SFSE ARQLG TPSA SRAIARLE+ALGT+LL RTTR Sbjct: 1 MSTNQSLVLLNEMATFVKVVESESFSETARQLGTTPSAVSRAIARLERALGTRLLYRTTR 60 Query: 61 KLRLSASGEEIHARCRDMLNAAQAVLAVSAAFDAEPQGQVRVSVPKAVGHALVHPHMPDF 120 KLRLS SG++++ RC DM+NAAQAV+ S F EP+G +R+SVPKAVGH ++HPH+P+F Sbjct: 61 KLRLSESGQQVYQRCLDMVNAAQAVMESSGQFHVEPEGIIRMSVPKAVGHFMIHPHLPEF 120 Query: 121 LASYPEVDVLLRLEDRYMDLIDDQVDLAIRITDKPPPGLMGRRLMRIDHLLCATPAYLAA 180 L YP++D+ + LEDRY+DLIDD VDLA+RIT++PP GLMGR+L+ IDHL+CATP YLA Sbjct: 121 LERYPKIDIQMLLEDRYVDLIDDGVDLALRITEQPPGGLMGRKLIDIDHLVCATPKYLAK 180 Query: 181 HGTPTHPQALKAHSCIYLGEAPADAQWRFRRHGKAVHVEVRGRYAANHTGVRLDATLRHV 240 HGTP HP LK H CIYLGE +D++W+F++ K++ V VRGRYAANHTGVRL A L+H+ Sbjct: 181 HGTPNHPHNLKQHECIYLGEQASDSKWKFQQGNKSISVAVRGRYAANHTGVRLSAALQHL 240 Query: 241 GIASLPYFIARPALEEGRLVQVLPQWSFKTRYCGELWALYPATRHLPPRLGAFVNFLAQR 300 GIASLPYF+AR AL++G LVQVLP W FKT Y G LW LYP TRH+PP+L F+ +LA + Sbjct: 241 GIASLPYFVARHALQQGTLVQVLPDWYFKTYYSGGLWLLYPPTRHVPPKLSVFIQYLADK 300 Query: 301 LAEEPTL 307 LA EPTL Sbjct: 301 LAAEPTL 307