BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2330.p         (103 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_841388.1| H-NS histone family protein [Nitrosomonas europ...    74   8e-12
ref|ZP_02885516.1| histone family protein nucleoid-structuring p...    64   1e-08
ref|YP_560871.1| HNS-like transcriptional regulator [Burkholderi...    63   1e-08
ref|YP_003908617.1| histone family protein nucleoid-structuring ...    63   2e-08
ref|YP_003747563.1| histone-like nucleoid-structuring protein H-...    63   2e-08

>ref|NP_841388.1| H-NS histone family protein [Nitrosomonas europaea ATCC 19718]
 emb|CAD85250.1| H-NS histone family [Nitrosomonas europaea ATCC 19718]
          Length = 96

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 43/98 (43%), Positives = 66/98 (67%), Gaps = 9/98 (9%)

Query: 3   SYADLQAQIKKLQDQAEKQKAKELESVIAGIKQQIAEYGLTAEQLGLAPARKKTVKKAAA 62
           +Y ++Q +IKKLQ QA + +AKE+  +IA IK +I  YG+T + LG    +KKT+     
Sbjct: 5   TYIEIQEEIKKLQKQANEIRAKEIADIIADIKVKIQLYGITEKDLGFGEKQKKTIFPP-- 62

Query: 63  KTAVVMYRNGDLTWSGAARGRKPGWVKEIMDAGGDIEK 100
                +Y+ G+ TWSG  RGR+PGW+KE ++AGG++E+
Sbjct: 63  -----LYKKGNRTWSG--RGRQPGWIKEHLEAGGNLEE 93


>ref|ZP_02885516.1| histone family protein nucleoid-structuring protein H-NS
          [Burkholderia graminis C4D1M]
 ref|YP_004229896.1| histone family protein nucleoid-structuring protein H-NS
          [Burkholderia sp. CCGE1001]
 gb|EDT08959.1| histone family protein nucleoid-structuring protein H-NS
          [Burkholderia graminis C4D1M]
 gb|ADX56836.1| histone family protein nucleoid-structuring protein H-NS
          [Burkholderia sp. CCGE1001]
          Length = 100

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 5/90 (5%)

Query: 1  MTSYADLQAQIKKLQDQAEKQKAKELESVIAGIKQQIAEYGLTAEQLGLAPA--RKKTVK 58
          M+ YADL+AQI KLQ QAE+ +  E+++VIA I+Q+IAEYGLTA+ LG A A  R +  K
Sbjct: 1  MSQYADLKAQIAKLQAQAEEARRTEIDNVIADIRQKIAEYGLTAQDLGFAVAAKRGRPPK 60

Query: 59 KAAAKTAVVMYRNGDLTWSGAARGRKPGWV 88
          KA         + G+ TWSG  RG+ P W+
Sbjct: 61 KAPLPAKYQDPKTGN-TWSG--RGKPPKWI 87


>ref|YP_560871.1| HNS-like transcriptional regulator [Burkholderia xenovorans
          LB400]
 gb|ABE32819.1| HNS-like transcriptional regulator [Burkholderia xenovorans
          LB400]
          Length = 100

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 61/90 (67%), Gaps = 5/90 (5%)

Query: 1  MTSYADLQAQIKKLQDQAEKQKAKELESVIAGIKQQIAEYGLTAEQLGLAPA--RKKTVK 58
          M+ YADL+AQI KLQ QAE+ +  E+++VIA I+Q+IAEYGLTA+ LG A A  R +  K
Sbjct: 1  MSQYADLKAQIAKLQAQAEEARRTEIDNVIADIRQKIAEYGLTAQDLGFAVAAKRGRPPK 60

Query: 59 KAAAKTAVVMYRNGDLTWSGAARGRKPGWV 88
          KA         ++G+ TWSG  RG+ P W+
Sbjct: 61 KAPLPAKYQDPKSGN-TWSG--RGKPPKWI 87


>ref|YP_003908617.1| histone family protein nucleoid-structuring protein H-NS
          [Burkholderia sp. CCGE1003]
 gb|ADN59326.1| histone family protein nucleoid-structuring protein H-NS
          [Burkholderia sp. CCGE1003]
          Length = 100

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 5/90 (5%)

Query: 1  MTSYADLQAQIKKLQDQAEKQKAKELESVIAGIKQQIAEYGLTAEQLGLAPA--RKKTVK 58
          M+ YADL+AQI KLQ QAE+ +  E+++V+A I+Q+IAEYGLTA+ LG A A  R +  K
Sbjct: 1  MSQYADLKAQIAKLQAQAEEARRTEIDNVVADIRQKIAEYGLTAQDLGFAVAAKRGRPPK 60

Query: 59 KAAAKTAVVMYRNGDLTWSGAARGRKPGWV 88
          KA         + G+ TWSG  RG+ P W+
Sbjct: 61 KAPLPAKYQDPKTGN-TWSG--RGKPPKWI 87


>ref|YP_003747563.1| histone-like nucleoid-structuring protein H-NS [Ralstonia
          solanacearum CFBP2957]
 emb|CBJ53146.1| Histone-like nucleoid-structuring protein H-NS [Ralstonia
          solanacearum CFBP2957]
          Length = 96

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 4/94 (4%)

Query: 1  MTSYADLQAQIKKLQDQAEKQKAKELESVIAGIKQQIAEYGLTAEQLGLAPARKKTVKKA 60
          M +Y +L AQ  KL++Q E  ++KELE+VI  ++Q +AEYGLTAE LGL P R    ++A
Sbjct: 1  MATYKELVAQKAKLEEQIEAARSKELEAVIQQVRQTVAEYGLTAEDLGLVPRRG---RRA 57

Query: 61 AAKTAV-VMYRNGDLTWSGAARGRKPGWVKEIMD 93
           AKT V   YR+     + + RGR P W+ +  D
Sbjct: 58 GAKTPVPPKYRDPKTGATWSGRGRAPAWIGKNRD 91