BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2326.p         (164 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775323.1| recombination factor RarA protein [Herbaspir...   306   9e-82
ref|ZP_00946190.1| ATPase, AAA family [Ralstonia solanacearum UW...   304   3e-81
ref|YP_003004677.1| recombination factor protein RarA [Dickeya z...   303   6e-81
ref|YP_003745024.1| replicatioN-associated recombination protein...   300   4e-80
ref|YP_970231.1| recombination factor protein RarA [Acidovorax c...   295   2e-78

>ref|YP_003775323.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63415.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1]
          Length = 434

 Score =  306 bits (783), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 152/164 (92%), Positives = 156/164 (95%)

Query: 1   MLDGGADPRYLSRRIVRMAWEDIGLADPRAMTIANDAAATYERLGSPEGELALAQAVIYL 60
           MLDGGADPRYLSRRIVRMAWEDIGLADPRAM IANDAA TYERLGSPEGELAL QAVIYL
Sbjct: 271 MLDGGADPRYLSRRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYL 330

Query: 61  AIAAKSNAGYMAYNQARAFVAKDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 120
           A+AAKSNAGY AYN ARAFV +DKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA
Sbjct: 331 AVAAKSNAGYNAYNAARAFVKQDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 390

Query: 121 AGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWDEDARKN 164
           AGETYLPDGI EPGWYQPVPRGLEIKIGEKL TLRQWDE+ARK+
Sbjct: 391 AGETYLPDGIEEPGWYQPVPRGLEIKIGEKLATLRQWDEEARKD 434


>ref|ZP_00946190.1| ATPase, AAA family [Ralstonia solanacearum UW551]
 ref|YP_002259076.1| cog2256 atpase related to the helicase subunit of the holliday
           junction resolvase protein [Ralstonia solanacearum
           IPO1609]
 gb|EAP71305.1| ATPase, AAA family [Ralstonia solanacearum UW551]
 emb|CAQ61005.1| probable cog2256 atpase related to the helicase subunit of the
           holliday junction resolvase protein [Ralstonia
           solanacearum IPO1609]
          Length = 435

 Score =  304 bits (778), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 149/164 (90%), Positives = 156/164 (95%)

Query: 1   MLDGGADPRYLSRRIVRMAWEDIGLADPRAMTIANDAAATYERLGSPEGELALAQAVIYL 60
           MLDGGADPRYLSRRIVRMAWEDIGLADPRAM IANDAA TYERLGSPEGELAL QAVIYL
Sbjct: 272 MLDGGADPRYLSRRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYL 331

Query: 61  AIAAKSNAGYMAYNQARAFVAKDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 120
           A+AAKSNAGY AYNQARAFV +DKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA
Sbjct: 332 AVAAKSNAGYNAYNQARAFVKQDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 391

Query: 121 AGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWDEDARKN 164
           AGETYLP+GI EPGWYQPVPRGLEIKIGEKL  L++WDE+A+KN
Sbjct: 392 AGETYLPEGIEEPGWYQPVPRGLEIKIGEKLSLLKKWDEEAKKN 435


>ref|YP_003004677.1| recombination factor protein RarA [Dickeya zeae Ech1591]
 gb|ACT07198.1| AAA ATPase central domain protein [Dickeya zeae Ech1591]
          Length = 434

 Score =  303 bits (776), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 149/163 (91%), Positives = 153/163 (93%)

Query: 1   MLDGGADPRYLSRRIVRMAWEDIGLADPRAMTIANDAAATYERLGSPEGELALAQAVIYL 60
           MLDGGADPRYLSRRI+RMAWEDIGLADPRAM IANDAA T+ERLGSPEGELAL QAVIYL
Sbjct: 271 MLDGGADPRYLSRRIIRMAWEDIGLADPRAMQIANDAATTFERLGSPEGELALGQAVIYL 330

Query: 61  AIAAKSNAGYMAYNQARAFVAKDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 120
           AIAAKSNAGYMAYNQARAFV +DKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA
Sbjct: 331 AIAAKSNAGYMAYNQARAFVKQDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 390

Query: 121 AGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWDEDARK 163
           AGETYLPDGI EPGWYQPVPRGLEIKI EKL  LR+WDE A K
Sbjct: 391 AGETYLPDGIDEPGWYQPVPRGLEIKIAEKLALLRKWDEKAGK 433


>ref|YP_003745024.1| replicatioN-associated recombination protein a [Ralstonia
           solanacearum CFBP2957]
 emb|CBJ42394.1| Replication-associated recombination protein A [Ralstonia
           solanacearum CFBP2957]
          Length = 434

 Score =  300 bits (769), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 149/163 (91%), Positives = 153/163 (93%)

Query: 1   MLDGGADPRYLSRRIVRMAWEDIGLADPRAMTIANDAAATYERLGSPEGELALAQAVIYL 60
           MLDGGADPRYLSRRIVRMAWEDIGLADPRAM IANDAA TYERLGSPEGELAL QAVIYL
Sbjct: 271 MLDGGADPRYLSRRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYL 330

Query: 61  AIAAKSNAGYMAYNQARAFVAKDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 120
           AIAAKSNAGY AYNQARAFV +DKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA
Sbjct: 331 AIAAKSNAGYNAYNQARAFVKQDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 390

Query: 121 AGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWDEDARK 163
           AGETYLPDGI EPGWYQP PRGLEIKIGEKL  L++WDE+A K
Sbjct: 391 AGETYLPDGIKEPGWYQPTPRGLEIKIGEKLAMLKKWDEEAGK 433


>ref|YP_970231.1| recombination factor protein RarA [Acidovorax citrulli AAC00-1]
 gb|ABM32457.1| Recombination protein MgsA [Acidovorax citrulli AAC00-1]
          Length = 462

 Score =  295 bits (754), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 145/164 (88%), Positives = 153/164 (93%)

Query: 1   MLDGGADPRYLSRRIVRMAWEDIGLADPRAMTIANDAAATYERLGSPEGELALAQAVIYL 60
           MLDGGAD RYL+RRIVRMAWEDIGLADPRAM IANDAA TYERLGSPEGELAL QAVIYL
Sbjct: 299 MLDGGADARYLARRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPEGELALGQAVIYL 358

Query: 61  AIAAKSNAGYMAYNQARAFVAKDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 120
           A+AAKSNAGY AYN ARAFV KDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA
Sbjct: 359 AVAAKSNAGYNAYNAARAFVKKDKSREVPVHLRNAPTKLMKELGYGHEYRYAHDEPNAYA 418

Query: 121 AGETYLPDGIAEPGWYQPVPRGLEIKIGEKLMTLRQWDEDARKN 164
           AGETYLPDG+ EPGWY+PVPRGLE+KI EKL  L++WDE+ARKN
Sbjct: 419 AGETYLPDGMDEPGWYRPVPRGLEVKIAEKLAVLKKWDEEARKN 462