BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2324.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775322.1| ferredoxin protein [Herbaspirillum seropedic...   180   8e-44
ref|YP_004753365.1| ferredoxin [Collimonas fungivorans Ter331] >...   152   1e-35
ref|YP_002004647.1| ferredoxin [Cupriavidus taiwanensis LMG 1942...   139   1e-31
ref|YP_001099919.1| ferredoxin [Herminiimonas arsenicoxydans] >g...   138   2e-31
ref|YP_294841.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralston...   137   5e-31

>ref|YP_003775322.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63414.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  180 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 96/111 (86%), Positives = 104/111 (93%)

Query: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLAIDPDGCIDCSMCVPECPVGAIYNATD 60
           MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFL IDPDGCIDCSMCVPECPVGAIYNATD
Sbjct: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLVIDPDGCIDCSMCVPECPVGAIYNATD 60

Query: 61  LPAALSHFEDLNARLAKLPGWKPITKAQPPLPDHAQWKDVADKLPLLKMPE 111
           LPA L+HFE LNARL++ PGWKPIT+A+PPLP H +WKDVADKLPLL+ P+
Sbjct: 61  LPATLAHFEQLNARLSRQPGWKPITQAKPPLPGHEKWKDVADKLPLLEQPQ 111


>ref|YP_004753365.1| ferredoxin [Collimonas fungivorans Ter331]
 gb|AEK62542.1| Ferredoxin [Collimonas fungivorans Ter331]
          Length = 110

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/108 (72%), Positives = 89/108 (82%)

Query: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLAIDPDGCIDCSMCVPECPVGAIYNATD 60
           MPFVVTDSCI+CKYTDCV VCPMDCF +GPNFL I P+ CIDCSMCVPECPVGAIYN  D
Sbjct: 1   MPFVVTDSCIRCKYTDCVEVCPMDCFRQGPNFLVIVPEDCIDCSMCVPECPVGAIYNQAD 60

Query: 61  LPAALSHFEDLNARLAKLPGWKPITKAQPPLPDHAQWKDVADKLPLLK 108
           LP    HF ++NARLA  P WKPIT++QPPLPDH  W++VA+KL  L+
Sbjct: 61  LPDEQRHFAEINARLAAHPDWKPITRSQPPLPDHEAWREVANKLEFLE 108


>ref|YP_002004647.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 emb|CAQ68578.1| putative FERREDOXIN [Cupriavidus taiwanensis LMG 19424]
          Length = 109

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/108 (66%), Positives = 83/108 (76%)

Query: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLAIDPDGCIDCSMCVPECPVGAIYNATD 60
           M FVVTD+CIQC++TDCV VCPM CF EGPNFLAIDPD CIDCSMCVP CPVGAIY+  D
Sbjct: 1   MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 61  LPAALSHFEDLNARLAKLPGWKPITKAQPPLPDHAQWKDVADKLPLLK 108
           LP    HF  LNA L++ P W P+T+A+ PLPDH QW    D+L LL+
Sbjct: 61  LPEDQRHFLALNAELSRRPDWLPLTQAKGPLPDHEQWAGHPDRLSLLR 108


>ref|YP_001099919.1| ferredoxin [Herminiimonas arsenicoxydans]
 emb|CAL61794.1| Ferredoxin 1 [Herminiimonas arsenicoxydans]
          Length = 109

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/107 (65%), Positives = 85/107 (79%)

Query: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLAIDPDGCIDCSMCVPECPVGAIYNATD 60
           MPFVVT+SCIQCKYTDCV+VCPMDCF EGPNFLAI+PD CIDCS+CVPECPV AI  A +
Sbjct: 1   MPFVVTESCIQCKYTDCVAVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGAAE 60

Query: 61  LPAALSHFEDLNARLAKLPGWKPITKAQPPLPDHAQWKDVADKLPLL 107
           +     HF +LN  L++ P WK I + + PLP+HA+W ++ DKLPLL
Sbjct: 61  ISPEQQHFVELNRTLSRHPDWKRIRQQKEPLPEHAKWAELKDKLPLL 107


>ref|YP_294841.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gb|AAZ59997.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Ralstonia eutropha
           JMP134]
          Length = 109

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/107 (67%), Positives = 81/107 (75%)

Query: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLAIDPDGCIDCSMCVPECPVGAIYNATD 60
           M FVVTD+CIQC++TDCV VCPM CF EGPNFLAIDPD CIDCSMCVP CPVGAIY+  D
Sbjct: 1   MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 61  LPAALSHFEDLNARLAKLPGWKPITKAQPPLPDHAQWKDVADKLPLL 107
           LP    HF  +NA LA+ P W P+ KA+ PL DHA W D  D+L LL
Sbjct: 61  LPEDQRHFVAINAELARRPDWLPLRKAKGPLSDHADWADHPDRLSLL 107