BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2323.p (418 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775323.1| recombination factor RarA protein [Herbaspir... 493 e-137 ref|YP_004235755.1| AAA ATPase central domain-containing protein... 472 e-131 ref|YP_970231.1| recombination factor protein RarA [Acidovorax c... 469 e-130 ref|YP_001352846.1| recombination factor protein RarA [Janthinob... 468 e-130 ref|YP_001566373.1| recombination factor protein RarA [Delftia a... 457 e-126 >ref|YP_003775323.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1] gb|ADJ63415.1| recombination factor RarA protein [Herbaspirillum seropedicae SmR1] Length = 434 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 250/258 (96%), Positives = 253/258 (98%) Query: 1 MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK Sbjct: 1 MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 Query: 61 TTLARLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120 TTLARLTATAF+CEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ Sbjct: 61 TTLARLTATAFECEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120 Query: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQDKALG 180 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQDKALG Sbjct: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQDKALG 180 Query: 181 DLAFDDQATDTIIGYADGDARRFLNLLEQTQTAAHTTGTQVVTAEFLQNALTLNSRRFDK 240 DL FD QATDTIIGYADGDARRFLNLLEQT TAA TTGT++VTAEFLQNALTLNSRRFDK Sbjct: 181 DLQFDQQATDTIIGYADGDARRFLNLLEQTDTAARTTGTRLVTAEFLQNALTLNSRRFDK 240 Query: 241 GGDNFYDQISALHKSVRA 258 GGDNFYDQISALHKSVR Sbjct: 241 GGDNFYDQISALHKSVRG 258 >ref|YP_004235755.1| AAA ATPase central domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47188.1| AAA ATPase central domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 434 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 238/258 (92%), Positives = 244/258 (94%) Query: 1 MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 MADLFAQEP+APLAEALRPKTLDEV+GQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK Sbjct: 1 MADLFAQEPSAPLAEALRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 Query: 61 TTLARLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120 TTLARLTATAF CEFIALSAVFSGVKDIRAAMEQA+QNLAMGKHTILFVDEIHRFNKSQQ Sbjct: 61 TTLARLTATAFKCEFIALSAVFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQ 120 Query: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQDKALG 180 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELK LLKRAQD ALG Sbjct: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKLLLKRAQDIALG 180 Query: 181 DLAFDDQATDTIIGYADGDARRFLNLLEQTQTAAHTTGTQVVTAEFLQNALTLNSRRFDK 240 L FDD A DTIIGYADGDARRFLNLLEQT TAA +G +TA+FLQNALTLNSRRFDK Sbjct: 181 HLVFDDLARDTIIGYADGDARRFLNLLEQTSTAAKASGITEITADFLQNALTLNSRRFDK 240 Query: 241 GGDNFYDQISALHKSVRA 258 GGDNFYDQISALHKSVR Sbjct: 241 GGDNFYDQISALHKSVRG 258 >ref|YP_970231.1| recombination factor protein RarA [Acidovorax citrulli AAC00-1] gb|ABM32457.1| Recombination protein MgsA [Acidovorax citrulli AAC00-1] Length = 462 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 234/258 (90%), Positives = 243/258 (94%) Query: 1 MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 MADLF+ P APLAEALRP +LDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK Sbjct: 29 MADLFSTPPVAPLAEALRPASLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 88 Query: 61 TTLARLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120 TTLARLTATAF CEFIALSAVFSGVKDIRAAMEQA+QNLAMGKHTILFVDEIHRFNKSQQ Sbjct: 89 TTLARLTATAFQCEFIALSAVFSGVKDIRAAMEQAQQNLAMGKHTILFVDEIHRFNKSQQ 148 Query: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQDKALG 180 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEEL+ LLKRAQ+ ALG Sbjct: 149 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELRLLLKRAQEMALG 208 Query: 181 DLAFDDQATDTIIGYADGDARRFLNLLEQTQTAAHTTGTQVVTAEFLQNALTLNSRRFDK 240 L FDD ATDTIIGYADGDARRFLNLLEQT TAA+ +GT +TA+FLQNALTLNSRRFDK Sbjct: 209 HLRFDDLATDTIIGYADGDARRFLNLLEQTSTAANASGTTAITADFLQNALTLNSRRFDK 268 Query: 241 GGDNFYDQISALHKSVRA 258 GGDNFYDQISALHKSVR Sbjct: 269 GGDNFYDQISALHKSVRG 286 >ref|YP_001352846.1| recombination factor protein RarA [Janthinobacterium sp. Marseille] gb|ABR89459.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 433 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 242/258 (93%), Positives = 254/258 (98%) Query: 1 MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 M+DLFA+EPAAPLAEALRPKTLDEV+GQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK Sbjct: 1 MSDLFAREPAAPLAEALRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 Query: 61 TTLARLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120 TTLARLTA+AF+CEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ Sbjct: 61 TTLARLTASAFECEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120 Query: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQDKALG 180 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSL+DEELKQLL+RAQ+KALG Sbjct: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLSDEELKQLLQRAQEKALG 180 Query: 181 DLAFDDQATDTIIGYADGDARRFLNLLEQTQTAAHTTGTQVVTAEFLQNALTLNSRRFDK 240 DL FD+QATDTIIGYADGDARRFLNLLEQT TAA+TTGT+ VTA+FLQNALTLNSRRFDK Sbjct: 181 DLQFDEQATDTIIGYADGDARRFLNLLEQTNTAANTTGTKKVTADFLQNALTLNSRRFDK 240 Query: 241 GGDNFYDQISALHKSVRA 258 GGDNFYDQISALHKSVR Sbjct: 241 GGDNFYDQISALHKSVRG 258 >ref|YP_001566373.1| recombination factor protein RarA [Delftia acidovorans SPH-1] ref|YP_004486639.1| AAA ATPase central domain-containing protein [Delftia sp. Cs1-4] gb|ABX37988.1| AAA ATPase central domain protein [Delftia acidovorans SPH-1] gb|AEF88284.1| AAA ATPase central domain protein [Delftia sp. Cs1-4] Length = 434 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 230/258 (89%), Positives = 242/258 (93%) Query: 1 MADLFAQEPAAPLAEALRPKTLDEVIGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 MADLF QEP+APLAEALRPKTLDEV+GQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK Sbjct: 1 MADLFTQEPSAPLAEALRPKTLDEVVGQSHLLGEGKPLRLAFQSGKPHSMIFWGPPGVGK 60 Query: 61 TTLARLTATAFDCEFIALSAVFSGVKDIRAAMEQAEQNLAMGKHTILFVDEIHRFNKSQQ 120 TTLARLTATAF CEFIALSAVFSGVKDIRAAMEQA+QNLAMG+HTILFVDEIHRFNKSQQ Sbjct: 61 TTLARLTATAFKCEFIALSAVFSGVKDIRAAMEQAQQNLAMGRHTILFVDEIHRFNKSQQ 120 Query: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDEELKQLLKRAQDKALG 180 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVL+SLTD+EL+QLL RAQ+KALG Sbjct: 121 DALLPYAESGLVTFIGATTENPSFEVNSALLSRAQVYVLQSLTDDELRQLLLRAQEKALG 180 Query: 181 DLAFDDQATDTIIGYADGDARRFLNLLEQTQTAAHTTGTQVVTAEFLQNALTLNSRRFDK 240 L FDD A DTI+GYADGDARRFLNLLEQ QTAA G + AEF+QNALTLN+RRFDK Sbjct: 181 GLEFDDLARDTIVGYADGDARRFLNLLEQCQTAAGAAGVTRIDAEFVQNALTLNARRFDK 240 Query: 241 GGDNFYDQISALHKSVRA 258 GGDNFYDQISALHKSVR Sbjct: 241 GGDNFYDQISALHKSVRG 258