BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2318.p         (90 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_347660.1| hypothetical protein Pfl01_1928 [Pseudomonas fl...    62   3e-08
ref|YP_002440940.1| hypothetical protein PLES_33541 [Pseudomonas...    60   8e-08
gb|AAT49731.1| PA1969 [synthetic construct]                            60   8e-08
ref|NP_250659.1| hypothetical protein PA1969 [Pseudomonas aerugi...    60   8e-08
ref|YP_791271.1| hypothetical protein PA14_39070 [Pseudomonas ae...    60   9e-08

>ref|YP_347660.1| hypothetical protein Pfl01_1928 [Pseudomonas fluorescens Pf0-1]
 gb|ABA73671.1| putative lipoprotein [Pseudomonas fluorescens Pf0-1]
          Length = 105

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 3   LGAVLVACSASRETPVA-DATAGQCDASRADHLIGENYSGYVERQALAESGATEIRVLKP 61
           LG      S S++ PVA +A  G+C+ S A+  +G+  S  +  QA  ++GA   R LKP
Sbjct: 17  LGGCTTTSSESQKDPVATEAGHGRCEVSAAEFALGKKASPELLEQARKKAGAQNARFLKP 76

Query: 62  DDAATMDFNPRRLNLHVDPGLVIIKVACG 90
           +D  T+++   RLNL+ D  LV+ +V+CG
Sbjct: 77  NDMITLEYRSDRLNLNTDQNLVVTRVSCG 105


>ref|YP_002440940.1| hypothetical protein PLES_33541 [Pseudomonas aeruginosa LESB58]
 emb|CAW28081.1| hypothetical protein PLES_33541 [Pseudomonas aeruginosa LESB58]
          Length = 130

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 24  GQCDASRADHLIGENYSGYVERQALAESGATEIRVLKPDDAATMDFNPRRLNLHVDPGLV 83
           G+CDA+     +G+  S  +  +A   +GA   R L+P DA TMD+NPRRLN+ VD  LV
Sbjct: 64  GRCDANAVQAYVGKQASAAIVEEARRAAGAEVARALRPHDAVTMDYNPRRLNIDVDDTLV 123

Query: 84  IIKVACG 90
           I +++CG
Sbjct: 124 IKRLSCG 130


>gb|AAT49731.1| PA1969 [synthetic construct]
          Length = 131

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 24  GQCDASRADHLIGENYSGYVERQALAESGATEIRVLKPDDAATMDFNPRRLNLHVDPGLV 83
           G+CDA+     +G+  S  +  +A   +GA   R L+P DA TMD+NPRRLN+ VD  LV
Sbjct: 64  GRCDANAVQAYVGKQASAAIVEEARRAAGAEVARALRPHDAVTMDYNPRRLNIDVDDTLV 123

Query: 84  IIKVACG 90
           I +++CG
Sbjct: 124 IKRLSCG 130


>ref|NP_250659.1| hypothetical protein PA1969 [Pseudomonas aeruginosa PAO1]
 ref|ZP_04928377.1| hypothetical protein PACG_00935 [Pseudomonas aeruginosa C3719]
 ref|ZP_04933731.1| hypothetical protein PA2G_01056 [Pseudomonas aeruginosa 2192]
 gb|AAG05357.1|AE004623_7 hypothetical protein PA1969 [Pseudomonas aeruginosa PAO1]
 gb|EAZ52496.1| hypothetical protein PACG_00935 [Pseudomonas aeruginosa C3719]
 gb|EAZ57850.1| hypothetical protein PA2G_01056 [Pseudomonas aeruginosa 2192]
          Length = 130

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 24  GQCDASRADHLIGENYSGYVERQALAESGATEIRVLKPDDAATMDFNPRRLNLHVDPGLV 83
           G+CDA+     +G+  S  +  +A   +GA   R L+P DA TMD+NPRRLN+ VD  LV
Sbjct: 64  GRCDANAVQAYVGKQASAAIVEEARRAAGAEVARALRPHDAVTMDYNPRRLNIDVDDTLV 123

Query: 84  IIKVACG 90
           I +++CG
Sbjct: 124 IKRLSCG 130


>ref|YP_791271.1| hypothetical protein PA14_39070 [Pseudomonas aeruginosa UCBPP-PA14]
 gb|ABJ11156.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 130

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 24  GQCDASRADHLIGENYSGYVERQALAESGATEIRVLKPDDAATMDFNPRRLNLHVDPGLV 83
           G+CDA+     +G+  S  +  +A   +GA   R L+P DA TMD+NPRRLN+ VD  LV
Sbjct: 64  GRCDANAVQAYVGKQASAAIVEEARRAAGAEVARALRPHDAVTMDYNPRRLNIDVDDTLV 123

Query: 84  IIKVACG 90
           I +++CG
Sbjct: 124 IKRLSCG 130