BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2315.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775316.1| DNA repair photolyase [Herbaspirillum serope... 315 2e-84 ref|ZP_06841141.1| Radical SAM domain protein [Burkholderia sp. ... 251 3e-65 ref|YP_004753370.1| Radical SAM domain-containing protein [Colli... 251 4e-65 ref|YP_001896598.1| radical SAM protein [Burkholderia phytofirma... 251 4e-65 ref|ZP_02884898.1| Radical SAM domain protein [Burkholderia gram... 250 7e-65 >ref|YP_003775316.1| DNA repair photolyase [Herbaspirillum seropedicae SmR1] gb|ADJ63408.1| DNA repair photolyase protein [Herbaspirillum seropedicae SmR1] Length = 417 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 173/191 (90%), Positives = 175/191 (91%), Gaps = 1/191 (0%) Query: 1 MAAKGQAIVAVTITTLDATIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVT 60 MAAK QAIVAVTITTLD IARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVT Sbjct: 227 MAAKDQAIVAVTITTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVT 286 Query: 61 EPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGK 120 EPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGK Sbjct: 287 EPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGK 346 Query: 121 DYDADFATRMRGTGVWADLLHQRFEKASRRLGIDHRNRAFATLDASRFKRPMVVPAGQRR 180 DYDADFATRMRGTGVWADLL QRFEKASRRLGI HRNRAFATLDAS FKRP P R+ Sbjct: 347 DYDADFATRMRGTGVWADLLQQRFEKASRRLGIHHRNRAFATLDASCFKRPQWAPQAPRQ 406 Query: 181 SA-GDAQLDLF 190 A D Q+DLF Sbjct: 407 PARSDGQMDLF 417 >ref|ZP_06841141.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] gb|EFG71431.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] Length = 381 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 133/191 (69%), Positives = 156/191 (81%), Gaps = 5/191 (2%) Query: 1 MAAKGQAIVAVTITTLDATIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVT 60 MAA+GQ + A+TITTLDA IARTLEPRAA+P+RRLR IRTL+EAGIPV VSIAPVIPFVT Sbjct: 195 MAARGQFMAAITITTLDAGIARTLEPRAATPSRRLRTIRTLSEAGIPVGVSIAPVIPFVT 254 Query: 61 EPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGK 120 EPD+ERV+EA EAGA A YIVLRLPWEV+PLF+ WL AHFPDRA RVM R++DMRGGK Sbjct: 255 EPDMERVLEACAEAGASNASYIVLRLPWEVAPLFKDWLSAHFPDRAERVMGRVRDMRGGK 314 Query: 121 DYDADFATRMRGTGVWADLLHQRFEKASRRLGIDHRNRAFATLDASRFKRPMVVPAGQRR 180 DYD+ F+TRM+G G+WADLL QRF KA RRLG++ R+R LD S F+R V P+ + Sbjct: 315 DYDSSFSTRMKGEGLWADLLKQRFHKAVRRLGLNQRDRGI--LDMSHFRR--VEPSRANQ 370 Query: 181 SA-GDAQLDLF 190 A D+QLDLF Sbjct: 371 PARNDSQLDLF 381 >ref|YP_004753370.1| Radical SAM domain-containing protein [Collimonas fungivorans Ter331] gb|AEK62547.1| Radical SAM domain protein [Collimonas fungivorans Ter331] Length = 401 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 142/190 (74%), Positives = 158/190 (83%), Gaps = 4/190 (2%) Query: 1 MAAKGQAIVAVTITTLDATIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVT 60 MAAK QA+ AVTI TLDATIARTLEPRAA+PARRLR IRTLAEAGIPVSVS+AP+IPF+T Sbjct: 216 MAAKRQAVAAVTIATLDATIARTLEPRAATPARRLRTIRTLAEAGIPVSVSVAPMIPFIT 275 Query: 61 EPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGK 120 EPD+ERV+EAA EAGA +AGY VLRLPWEV+PLF+ WLQAHFP+RA RVMNRI++MRGG Sbjct: 276 EPDMERVIEAAAEAGAVRAGYTVLRLPWEVNPLFKNWLQAHFPERANRVMNRIREMRGGA 335 Query: 121 DYDADFATRMRGTGVWADLLHQRFEKASRRLGIDHRNRAFATLDASRFKRPMVVPAGQRR 180 DYDADFATRMRG GVWADLL QRFEKA R G+ H +F TLD SRFKRP V P R Sbjct: 336 DYDADFATRMRGEGVWADLLRQRFEKAVLRFGMTH-GGSFGTLDTSRFKRPYVQPEKDRL 394 Query: 181 SAGDAQLDLF 190 S Q+ LF Sbjct: 395 S---GQMGLF 401 >ref|YP_001896598.1| radical SAM protein [Burkholderia phytofirmans PsJN] gb|ACD17374.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN] Length = 381 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 132/190 (69%), Positives = 156/190 (82%), Gaps = 3/190 (1%) Query: 1 MAAKGQAIVAVTITTLDATIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVT 60 MAA+GQ + A+TITTLDA IARTLEPRAA+P+RRLR IRTL+EAGIPV VSIAPVIPFVT Sbjct: 195 MAARGQFMAAITITTLDAEIARTLEPRAATPSRRLRAIRTLSEAGIPVGVSIAPVIPFVT 254 Query: 61 EPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGK 120 EPD+ERV+EA EAGA A YIVLRLPWEV+PLF+ WL AHFPDRA RVM+R++DMRGGK Sbjct: 255 EPDMERVLEACAEAGASNASYIVLRLPWEVAPLFKDWLAAHFPDRADRVMSRVRDMRGGK 314 Query: 121 DYDADFATRMRGTGVWADLLHQRFEKASRRLGIDHRNRAFATLDASRFKRPMVVPAGQRR 180 DYD+ F+TRM+G G+WADLL QRF KA RRLG++ R+R LD S F RP+ VP + Sbjct: 315 DYDSSFSTRMKGEGLWADLLKQRFHKAVRRLGLNRRDRGI--LDMSHF-RPVDVPRADKP 371 Query: 181 SAGDAQLDLF 190 + D QL+LF Sbjct: 372 ARDDPQLNLF 381 >ref|ZP_02884898.1| Radical SAM domain protein [Burkholderia graminis C4D1M] gb|EDT09692.1| Radical SAM domain protein [Burkholderia graminis C4D1M] Length = 376 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 134/190 (70%), Positives = 154/190 (81%), Gaps = 3/190 (1%) Query: 1 MAAKGQAIVAVTITTLDATIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVT 60 MAA+GQ + A+TITTLDA IARTLEPRAA+P+RRLR IRTL+EAGIPV VSIAPVIPFVT Sbjct: 190 MAARGQFMAAITITTLDAGIARTLEPRAATPSRRLRTIRTLSEAGIPVGVSIAPVIPFVT 249 Query: 61 EPDLERVMEAAVEAGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGK 120 EPD+ERV+EA EAGA A YIVLRLPWEV+PLF+ WL AHFPDRA RVM R++DMRGGK Sbjct: 250 EPDMERVLEACAEAGASNASYIVLRLPWEVAPLFKDWLAAHFPDRAERVMARVRDMRGGK 309 Query: 121 DYDADFATRMRGTGVWADLLHQRFEKASRRLGIDHRNRAFATLDASRFKRPMVVPAGQRR 180 DYD+ F+TRM+G G+WADLL QRF KA RRLG++ R+R LD S FKR VP Q Sbjct: 310 DYDSSFSTRMKGEGLWADLLKQRFHKAVRRLGLNQRDRGI--LDMSHFKR-HEVPRRQAA 366 Query: 181 SAGDAQLDLF 190 S + QLDLF Sbjct: 367 SGDNPQLDLF 376