BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2313.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775314.1| hypothetical protein Hsero_1897 [Herbaspiril...   246   1e-63
ref|YP_003694330.1| hypothetical protein Snov_2416 [Starkeya nov...   181   3e-44
ref|ZP_08072168.1| protein of unknown function DUF779 [Methylocy...   181   3e-44
gb|ADI18840.1| uncharacterized protein conserved in bacteria [un...   180   5e-44
ref|ZP_08821768.1| protein of unknown function DUF779 [Thiorhodo...   175   2e-42

>ref|YP_003775314.1| hypothetical protein Hsero_1897 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63406.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 128

 Score =  246 bits (627), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 116/126 (92%), Positives = 122/126 (96%)

Query: 1   MNALPRVTATEATVELLRQLKARHGELIFFQSGGCCDGSAPMCYPAGDFTLGDTDVHLGE 60
           M ALPRVTAT+ATV+LLRQLK RHG LIFFQSGGCCDGSAPMCYP GDFTLGDTDV+LG+
Sbjct: 3   MTALPRVTATDATVDLLRQLKTRHGALIFFQSGGCCDGSAPMCYPEGDFTLGDTDVYLGD 62

Query: 61  IDGVPFYIGADQFEYWKHTQLIIDVVSGNGGMFSLENGSGKRFLTRSRLFSDEEYDALAP 120
           IDGVPFYIGADQFEYWKHTQLIIDVV+GNGGMFSLENGSGKRFLTRSRLF+DEEYDALAP
Sbjct: 63  IDGVPFYIGADQFEYWKHTQLIIDVVNGNGGMFSLENGSGKRFLTRSRLFTDEEYDALAP 122

Query: 121 LSARVT 126
           LSARVT
Sbjct: 123 LSARVT 128


>ref|YP_003694330.1| hypothetical protein Snov_2416 [Starkeya novella DSM 506]
 gb|ADH89711.1| protein of unknown function DUF779 [Starkeya novella DSM 506]
          Length = 149

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/118 (70%), Positives = 95/118 (80%)

Query: 4   LPRVTATEATVELLRQLKARHGELIFFQSGGCCDGSAPMCYPAGDFTLGDTDVHLGEIDG 63
           +PRV AT A +EL+  L+A HG L+F QSGGCCDGS+PMCYP GDF +GD DVH+GEI G
Sbjct: 26  VPRVLATPAALELIAALRADHGALLFHQSGGCCDGSSPMCYPVGDFIVGDRDVHMGEIGG 85

Query: 64  VPFYIGADQFEYWKHTQLIIDVVSGNGGMFSLENGSGKRFLTRSRLFSDEEYDALAPL 121
            PFY+   QF+YWKHTQLIIDVV G GGMFSLENG   RFLTRSRLF+DEE D LAP+
Sbjct: 86  APFYMSPSQFDYWKHTQLIIDVVPGRGGMFSLENGRDVRFLTRSRLFADEELDRLAPV 143


>ref|ZP_08072168.1| protein of unknown function DUF779 [Methylocystis sp. ATCC 49242]
 gb|EFY00371.1| protein of unknown function DUF779 [Methylocystis sp. ATCC 49242]
          Length = 124

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/124 (66%), Positives = 101/124 (81%)

Query: 1   MNALPRVTATEATVELLRQLKARHGELIFFQSGGCCDGSAPMCYPAGDFTLGDTDVHLGE 60
           M A  RV AT A ++L+ +L+  HG+++F QSGGCCDGSAPMCYP G+F +GD DV LGE
Sbjct: 1   MEAPLRVVATPAALDLIERLRREHGDILFHQSGGCCDGSAPMCYPQGEFLVGDNDVRLGE 60

Query: 61  IDGVPFYIGADQFEYWKHTQLIIDVVSGNGGMFSLENGSGKRFLTRSRLFSDEEYDALAP 120
           I G PFYIGA QF+YWKHTQLIIDVV G GGMFSLENG+G+RFLTRSRLFSD+E   LA 
Sbjct: 61  IGGAPFYIGAAQFDYWKHTQLIIDVVPGQGGMFSLENGTGQRFLTRSRLFSDDELTMLAL 120

Query: 121 LSAR 124
           ++++
Sbjct: 121 ITSQ 124


>gb|ADI18840.1| uncharacterized protein conserved in bacteria [uncultured beta
           proteobacterium HF0010_04H24]
          Length = 131

 Score =  180 bits (457), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 98/112 (87%)

Query: 3   ALPRVTATEATVELLRQLKARHGELIFFQSGGCCDGSAPMCYPAGDFTLGDTDVHLGEID 62
           A+ RV AT+A +E++ +L+ RHG L+FFQSGGCCDGSAPMCY  G+F + DTD++LG ++
Sbjct: 4   AIARVVATDAALEMMDKLRQRHGPLMFFQSGGCCDGSAPMCYALGEFDVSDTDIYLGNLN 63

Query: 63  GVPFYIGADQFEYWKHTQLIIDVVSGNGGMFSLENGSGKRFLTRSRLFSDEE 114
           G PFY+G +QFEYW+HTQLIIDVV GNGGMFSL+NG+GKRFLTRSRLF+DEE
Sbjct: 64  GTPFYMGLEQFEYWEHTQLIIDVVDGNGGMFSLDNGTGKRFLTRSRLFTDEE 115


>ref|ZP_08821768.1| protein of unknown function DUF779 [Thiorhodococcus drewsii AZ1]
 gb|EGV33373.1| protein of unknown function DUF779 [Thiorhodococcus drewsii AZ1]
          Length = 128

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/117 (70%), Positives = 94/117 (80%)

Query: 5   PRVTATEATVELLRQLKARHGELIFFQSGGCCDGSAPMCYPAGDFTLGDTDVHLGEIDGV 64
           PRV ATEAT+EL+ +LK  HGEL+F QSGGCCDGSAPMC+PAGDF  G +DV LGEI G 
Sbjct: 6   PRVVATEATLELIERLKEMHGELMFHQSGGCCDGSAPMCWPAGDFRTGASDVKLGEIGGC 65

Query: 65  PFYIGADQFEYWKHTQLIIDVVSGNGGMFSLENGSGKRFLTRSRLFSDEEYDALAPL 121
           PF++   QFEYW+HTQLIIDVV G GGMFSLE   G RFLTRSRLF+DEE   +AP+
Sbjct: 66  PFWMSESQFEYWQHTQLIIDVVPGRGGMFSLEGPEGVRFLTRSRLFTDEESAGVAPV 122