BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2311.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004753401.1| nitrogen regulatory protein P-II [Collimonas...   172   1e-41
ref|ZP_08273094.1| Nitrogen regulatory protein P-II [Oxalobacter...   169   2e-40
ref|YP_001352841.1| nitrogen regulatory protein PII [Janthinobac...   166   1e-39
ref|YP_003775312.1| nitrogen regulatory P-II protein [Herbaspiri...   166   1e-39
ref|ZP_05104290.1| nitrogen regulatory protein P-II [Methylophag...   164   4e-39

>ref|YP_004753401.1| nitrogen regulatory protein P-II [Collimonas fungivorans Ter331]
 gb|AEK62578.1| Nitrogen regulatory protein P-II [Collimonas fungivorans Ter331]
          Length = 118

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 99/112 (88%), Positives = 109/112 (97%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQ+TA+IKPFKLDEVRE+LAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct: 7   MKQITAVIKPFKLDEVREALAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 66

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
           +E+V+DD + E+AVDAIIKAARTGKIGDGKIFV+ +EQVIRIRTGETGPDAV
Sbjct: 67  VELVIDDALTERAVDAIIKAARTGKIGDGKIFVRNIEQVIRIRTGETGPDAV 118


>ref|ZP_08273094.1| Nitrogen regulatory protein P-II [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33439.1| Nitrogen regulatory protein P-II [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 112

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 99/112 (88%), Positives = 106/112 (94%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQ+TAIIKPFKLDEVRE+LAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct: 1   MKQITAIIKPFKLDEVREALAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
           +E +VDD  ++ AVDAIIKAARTGKIGDGKIFVQ VEQV+RIRTGETG DAV
Sbjct: 61  VEAIVDDSAMDAAVDAIIKAARTGKIGDGKIFVQNVEQVVRIRTGETGSDAV 112


>ref|YP_001352841.1| nitrogen regulatory protein PII [Janthinobacterium sp. Marseille]
 gb|ABR90080.1| Nitrogen regulatory protein PII [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/112 (92%), Positives = 107/112 (95%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQVTAIIKPFKLDEVRE+LAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct: 1   MKQVTAIIKPFKLDEVREALAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
           +E VVDD  VEQAVDAIIKAARTGKIGDGKIFVQ VEQVIRIRTGETG +AV
Sbjct: 61  VEAVVDDAGVEQAVDAIIKAARTGKIGDGKIFVQAVEQVIRIRTGETGAEAV 112


>ref|YP_003775312.1| nitrogen regulatory P-II protein [Herbaspirillum seropedicae SmR1]
 pdb|1HWU|A Chain A, Structure Of Pii Protein From Herbaspirillum Seropedicae
 pdb|1HWU|B Chain B, Structure Of Pii Protein From Herbaspirillum Seropedicae
 pdb|1HWU|C Chain C, Structure Of Pii Protein From Herbaspirillum Seropedicae
 pdb|1HWU|D Chain D, Structure Of Pii Protein From Herbaspirillum Seropedicae
 pdb|1HWU|E Chain E, Structure Of Pii Protein From Herbaspirillum Seropedicae
 pdb|1HWU|F Chain F, Structure Of Pii Protein From Herbaspirillum Seropedicae
 gb|AAB46605.1| PII protein [Herbaspirillum seropedicae]
 emb|CAM32567.1| Nitrogen regulatory P-II protein [Herbaspirillum seropedicae]
 gb|ADJ63404.1| nitrogen regulatory P-II protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
           IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV
Sbjct: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112


>ref|ZP_05104290.1| nitrogen regulatory protein P-II [Methylophaga thiooxidans DMS010]
 ref|ZP_08534822.1| nitrogen regulatory protein PII [Methylophaga aminisulfidivorans
           MP]
 gb|EEF79890.1| nitrogen regulatory protein P-II [Methylophaga thiooxydans DMS010]
 gb|EGL54291.1| nitrogen regulatory protein PII [Methylophaga aminisulfidivorans
           MP]
          Length = 112

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/112 (80%), Positives = 103/112 (91%)

Query: 1   MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60
           MKQV AIIKPFKLD+VRESL+E+GV GLTV+EVKGFGRQKGHTELYRGAEYVVDFLPK+K
Sbjct: 1   MKQVVAIIKPFKLDDVRESLSEIGVQGLTVSEVKGFGRQKGHTELYRGAEYVVDFLPKLK 60

Query: 61  IEVVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112
           +E+ VDD +VEQ ++AIIK A TGKIGDGKIFV  +EQV+RIRTGETGPDA+
Sbjct: 61  LEIAVDDDIVEQVIEAIIKGANTGKIGDGKIFVYPLEQVVRIRTGETGPDAL 112