BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2305.p (352 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775306.1| periplasmic serine protease [Herbaspirillum ... 584 e-165 ref|YP_004753538.1| putative signal peptide peptidase [Collimona... 471 e-131 ref|ZP_08272643.1| Peptidase S49 [Oxalobacteraceae bacterium IMC... 452 e-125 ref|YP_001100348.1| putative signal peptide peptidase [Herminiim... 434 e-120 ref|YP_001353040.1| U7 family peptidase [Janthinobacterium sp. M... 427 e-117 >ref|YP_003775306.1| periplasmic serine protease [Herbaspirillum seropedicae SmR1] gb|ADJ63398.1| periplasmic serine protease (ClpP class) protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 303/352 (86%), Positives = 325/352 (92%), Gaps = 9/352 (2%) Query: 1 MSNNESDNPQDRPPQSSSSSPASPPPAAPSSSIPASVREDKKSGWERDVLEKLALFAVKE 60 MSNNES++P+ S P S PPA PSSSIPASVR+DKKSGWERDVLEKLALFAVKE Sbjct: 1 MSNNESEHPE--------SQPQSTPPA-PSSSIPASVRDDKKSGWERDVLEKLALFAVKE 51 Query: 61 QRARRRWGIFFRIAILVVIVLGGWMAFTYNKIESEPLGTHTALVEIRGTIESEGQGSAGV 120 QRARRRWG+FFRIA+L V+VLG WMAFT+N+IE+EPLG HTALVEI+G I+SEGQGSAGV Sbjct: 52 QRARRRWGVFFRIALLAVVVLGVWMAFTFNRIENEPLGPHTALVEIKGAIDSEGQGSAGV 111 Query: 121 VIPALDKAFAASDSVGVILKINSPGGSPVQAGMINDEITRLRKAYPKKPIYVVVEEMCAS 180 VIPALDKAFAA+DSVGVILKINSPGGSPVQAGMINDEITRLRK YPKKPIYVVVEE+CAS Sbjct: 112 VIPALDKAFAANDSVGVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCAS 171 Query: 181 GGYYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSP 240 GGYYIA AADKI+VNKASL+GSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSP Sbjct: 172 GGYYIAAAADKIFVNKASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSP 231 Query: 241 QSPKQREYAQSMLQEIHQQFIEVVRQGRGTRLKETPDTFSGLVWTGSKAVELGLADGYGT 300 QSPKQREYAQSMLQEIHQQFIEVVRQGRG RLKETPDTFSGLVWTGSKAVELGLADG+GT Sbjct: 232 QSPKQREYAQSMLQEIHQQFIEVVRQGRGARLKETPDTFSGLVWTGSKAVELGLADGFGT 291 Query: 301 VDSVARDVIKAEDVVDYTQTEGFSERVLKKFGVAVGSGVAKSMVGSNGLQLR 352 VDSVARD IKAEDVVDYTQTE SERVLKKFGVA G+G AK+++ S+ QLR Sbjct: 292 VDSVARDEIKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKTVMSSSLPQLR 343 >ref|YP_004753538.1| putative signal peptide peptidase [Collimonas fungivorans Ter331] gb|AEK62715.1| putative signal peptide peptidase [Collimonas fungivorans Ter331] Length = 325 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 230/312 (73%), Positives = 269/312 (86%) Query: 41 KKSGWERDVLEKLALFAVKEQRARRRWGIFFRIAILVVIVLGGWMAFTYNKIESEPLGTH 100 KK GWER+VLEKLA +++EQRARRRWGIFF++ ++ +IV G W+ Y +++ +G H Sbjct: 14 KKEGWEREVLEKLAFASLREQRARRRWGIFFKLTVIGLIVFGVWLGMNYEGSDTQTVGAH 73 Query: 101 TALVEIRGTIESEGQGSAGVVIPALDKAFAASDSVGVILKINSPGGSPVQAGMINDEITR 160 TALV+I G IESEG GSAGVV+PALD AFAA DSVGVIL+INSPGGSPVQAG+INDEI R Sbjct: 74 TALVKINGAIESEGNGSAGVVVPALDNAFAADDSVGVILRINSPGGSPVQAGIINDEIAR 133 Query: 161 LRKAYPKKPIYVVVEEMCASGGYYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMDKLG 220 LRK YP KP+YVVV+EMCASGGYYIA AADKIYVNKAS++GS+GVLMDGFGFTGLMDK+G Sbjct: 134 LRKEYPNKPLYVVVDEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVG 193 Query: 221 VERRLLTAGENKSFLDPFSPQSPKQREYAQSMLQEIHQQFIEVVRQGRGTRLKETPDTFS 280 VERRLLTAGENK FLDPFSP S Q+ YAQ+ML EIHQQFI+VVR+GRG RLKETP+TFS Sbjct: 194 VERRLLTAGENKGFLDPFSPMSATQKGYAQTMLAEIHQQFIDVVRKGRGARLKETPETFS 253 Query: 281 GLVWTGSKAVELGLADGYGTVDSVARDVIKAEDVVDYTQTEGFSERVLKKFGVAVGSGVA 340 GL W+GSKAVE+GLADGYGTVDSVARDV+K ED+VDYT++EG ERVLKKFGVA+G+GV Sbjct: 254 GLFWSGSKAVEMGLADGYGTVDSVARDVLKQEDIVDYTKSEGLPERVLKKFGVAMGAGVV 313 Query: 341 KSMVGSNGLQLR 352 +S+ LR Sbjct: 314 QSLANDIKPSLR 325 >ref|ZP_08272643.1| Peptidase S49 [Oxalobacteraceae bacterium IMCC9480] gb|EGF33895.1| Peptidase S49 [Oxalobacteraceae bacterium IMCC9480] Length = 313 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 226/311 (72%), Positives = 263/311 (84%), Gaps = 1/311 (0%) Query: 42 KSGWERDVLEKLALFAVKEQRARRRWGIFFRIAILVVIVLGGWMAFTYNKIESEPLGTHT 101 K GWERDV+EKLA A++EQRARRRWGIFFR+A L +V G W ++ K ++E L THT Sbjct: 2 KDGWERDVIEKLAYEALREQRARRRWGIFFRLATLAAVVFGIWAFVSFGKTDTEVLTTHT 61 Query: 102 ALVEIRGTIESEGQGSAGV-VIPALDKAFAASDSVGVILKINSPGGSPVQAGMINDEITR 160 AL++I GTIES G + VIPAL+KA+A + +VG+IL+INSPGGSPVQAGMINDEI R Sbjct: 62 ALIDIDGTIESGGGSGSAESVIPALNKAYADTAAVGIILRINSPGGSPVQAGMINDEIGR 121 Query: 161 LRKAYPKKPIYVVVEEMCASGGYYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMDKLG 220 L K YPKKP+YVVV+EMCASGGYYIAVAADKI+VNKAS++GS+GVLMDGFGFTGLMDK+G Sbjct: 122 LHKLYPKKPLYVVVDEMCASGGYYIAVAADKIFVNKASIVGSIGVLMDGFGFTGLMDKVG 181 Query: 221 VERRLLTAGENKSFLDPFSPQSPKQREYAQSMLQEIHQQFIEVVRQGRGTRLKETPDTFS 280 VERRL TAG NK F+DPFSPQS KQ+ YAQ ML EIHQQFI+VVR+GRG RLKETP+TFS Sbjct: 182 VERRLQTAGVNKGFMDPFSPQSEKQKAYAQEMLDEIHQQFIDVVRKGRGKRLKETPETFS 241 Query: 281 GLVWTGSKAVELGLADGYGTVDSVARDVIKAEDVVDYTQTEGFSERVLKKFGVAVGSGVA 340 GL WTG+KAVE+GLADG+GT+DSVARD KAEDVVDYTQ EG ERVLKKFG A+G+G Sbjct: 242 GLFWTGTKAVEMGLADGFGTIDSVARDEFKAEDVVDYTQHEGLPERVLKKFGAAMGAGAM 301 Query: 341 KSMVGSNGLQL 351 KS+V GLQL Sbjct: 302 KSIVSGAGLQL 312 >ref|YP_001100348.1| putative signal peptide peptidase [Herminiimonas arsenicoxydans] emb|CAL62225.1| Putative peptidase S49 [Herminiimonas arsenicoxydans] Length = 334 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 222/350 (63%), Positives = 267/350 (76%), Gaps = 17/350 (4%) Query: 3 NNESDNPQDRPPQSSSSSPASPPPAAPSSSIPASVREDKKSGWERDVLEKLALFAVKEQR 62 +N+SD ++PP +++PA P KK GWER+VLEKLA +KEQR Sbjct: 2 SNDSDQ-LNQPPSWQAATPAIP----------------KKEGWEREVLEKLAFATIKEQR 44 Query: 63 ARRRWGIFFRIAILVVIVLGGWMAFTYNKIESEPLGTHTALVEIRGTIESEGQGSAGVVI 122 ARRRWGIFF+ L++I W +F + + E +G HTAL++I GTIE++G G A VI Sbjct: 45 ARRRWGIFFKFTTLLLIAFALWTSFGPSVSDMENVGPHTALIKIEGTIEAKGAGDAETVI 104 Query: 123 PALDKAFAASDSVGVILKINSPGGSPVQAGMINDEITRLRKAYPKKPIYVVVEEMCASGG 182 AL KA+A SVG+IL+INSPGGSPVQAG+INDEITRLRK YPKKP+YVVV E+CASGG Sbjct: 105 SALTKAYADPGSVGLILQINSPGGSPVQAGIINDEITRLRKKYPKKPLYVVVNEICASGG 164 Query: 183 YYIAVAADKIYVNKASLIGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQS 242 YYIA AAD+IYVNKAS++GS+GVLMDGFGFTG M+KLGVERRLLTAGENK FLDPFSPQ+ Sbjct: 165 YYIASAADRIYVNKASIVGSIGVLMDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQT 224 Query: 243 PKQREYAQSMLQEIHQQFIEVVRQGRGTRLKETPDTFSGLVWTGSKAVELGLADGYGTVD 302 KQ+EYAQ ML EIHQQFI+VVR GRG RLKETP+ FSGL W+G+K+VELGLADG+GTV+ Sbjct: 225 EKQKEYAQGMLNEIHQQFIDVVRTGRGKRLKETPEIFSGLFWSGAKSVELGLADGFGTVE 284 Query: 303 SVARDVIKAEDVVDYTQTEGFSERVLKKFGVAVGSGVAKSMVGSNGLQLR 352 SVARD KA ++VDYTQ EG S+RVL+KFG A G KS L+ Sbjct: 285 SVARDEFKATNIVDYTQREGLSDRVLRKFGAAAGESAVKSFAAQTAPSLK 334 >ref|YP_001353040.1| U7 family peptidase [Janthinobacterium sp. Marseille] gb|ABR88514.1| peptidase U7 family [Janthinobacterium sp. Marseille] Length = 334 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 208/304 (68%), Positives = 252/304 (82%) Query: 29 PSSSIPASVREDKKSGWERDVLEKLALFAVKEQRARRRWGIFFRIAILVVIVLGGWMAFT 88 PS+ ++ KK GWER+VLEKLA +KEQRARRRWGIFF+ + +I WM+F Sbjct: 11 PSAWQASTAAAPKKEGWEREVLEKLAFATLKEQRARRRWGIFFKFVTVALIAFALWMSFG 70 Query: 89 YNKIESEPLGTHTALVEIRGTIESEGQGSAGVVIPALDKAFAASDSVGVILKINSPGGSP 148 + + E +G HTAL++I GTIE++G G A VI AL KA+A SVG+IL+INSPGGSP Sbjct: 71 PSVGDMENVGPHTALIKIDGTIEAKGAGDADSVISALTKAYADPGSVGLILQINSPGGSP 130 Query: 149 VQAGMINDEITRLRKAYPKKPIYVVVEEMCASGGYYIAVAADKIYVNKASLIGSVGVLMD 208 VQAG+INDE+TRLRK YP+KP+YVVV EMCASGGYYIAVAAD+IYVNKASL+GS+GVLMD Sbjct: 131 VQAGIINDEMTRLRKKYPQKPLYVVVNEMCASGGYYIAVAADRIYVNKASLVGSIGVLMD 190 Query: 209 GFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQSPKQREYAQSMLQEIHQQFIEVVRQGR 268 GFGFTG M+KLGVERR+LTAG NK F+DPFSPQ+ Q+ YAQ ML EIHQQFI+VVR+GR Sbjct: 191 GFGFTGTMEKLGVERRMLTAGNNKGFMDPFSPQTETQKHYAQDMLNEIHQQFIDVVRKGR 250 Query: 269 GTRLKETPDTFSGLVWTGSKAVELGLADGYGTVDSVARDVIKAEDVVDYTQTEGFSERVL 328 G RLKETP+TFSGLVWTG+K++ELGLADG+GTV+SVARD K+ ++VDYTQ EG S+RVL Sbjct: 251 GKRLKETPETFSGLVWTGAKSIELGLADGFGTVESVARDEFKSTNIVDYTQREGLSDRVL 310 Query: 329 KKFG 332 +KFG Sbjct: 311 RKFG 314