BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2304.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775305.1| nitrite reductase ferredoxin subunit [Herbas...   227   6e-58
ref|YP_001353039.1| hypothetical protein mma_1349 [Janthinobacte...   174   3e-42
ref|YP_001100349.1| Rieske family iron-sulfur cluster-binding pr...   174   3e-42
ref|YP_001898490.1| Rieske (2Fe-2S) domain-containing protein [R...   164   3e-39
ref|YP_002980945.1| Rieske (2Fe-2S) domain-containing protein [R...   164   5e-39

>ref|YP_003775305.1| nitrite reductase ferredoxin subunit [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63397.1| nitrite reductase ferredoxin subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 124

 Score =  227 bits (578), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 107/124 (86%), Positives = 114/124 (91%)

Query: 1   MTTPEEIFICPSAALQEGGLGKRFPVQVHGDETTGFVVRYGGVVYGYLNRCAHVPIELDW 60
           MT  + I IC SA L EGGLGKRFPVQV GDE +GFVVRYGGVVYGYLNRCAH+P+ELDW
Sbjct: 1   MTASDAILICASAELVEGGLGKRFPVQVRGDEASGFVVRYGGVVYGYLNRCAHLPVELDW 60

Query: 61  AEGEFFESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKIMAVERDGQVFWRPDDIVQ 120
           AEGEFFESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKIM VER+GQVFWRPDD+V+
Sbjct: 61  AEGEFFESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKIMTVEREGQVFWRPDDVVK 120

Query: 121 PVEA 124
           PVEA
Sbjct: 121 PVEA 124


>ref|YP_001353039.1| hypothetical protein mma_1349 [Janthinobacterium sp. Marseille]
 gb|ABR90725.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 122

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/119 (63%), Positives = 94/119 (78%)

Query: 6   EIFICPSAALQEGGLGKRFPVQVHGDETTGFVVRYGGVVYGYLNRCAHVPIELDWAEGEF 65
           +I IC SAAL++GG G RFP+   G++ TGFVVRY GVVYGYLNRCAH+PIELDW  GEF
Sbjct: 4   DILICDSAALEDGGTGVRFPLTAGGEDATGFVVRYNGVVYGYLNRCAHIPIELDWNNGEF 63

Query: 66  FESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKIMAVERDGQVFWRPDDIVQPVEA 124
           FE+ G YL+C+THGA+Y P+TG+CAGGPC G  LR I+  E+D QVFW+ D+ V+P  A
Sbjct: 64  FETEGRYLICSTHGAIYLPETGRCAGGPCRGGRLRTIVVTEKDNQVFWQADEFVRPARA 122


>ref|YP_001100349.1| Rieske family iron-sulfur cluster-binding protein [Herminiimonas
           arsenicoxydans]
 emb|CAL62226.1| Putative iron-sulfur cluster-binding protein, Rieske family
           [Herminiimonas arsenicoxydans]
          Length = 123

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/118 (66%), Positives = 95/118 (80%)

Query: 7   IFICPSAALQEGGLGKRFPVQVHGDETTGFVVRYGGVVYGYLNRCAHVPIELDWAEGEFF 66
           I IC ++AL+EGG G RFPV   GD+ TGFVVRYGG+   YLNRCAHVPIELDW EG+FF
Sbjct: 6   IPICDASALEEGGKGIRFPVTAGGDDATGFVVRYGGLARAYLNRCAHVPIELDWNEGDFF 65

Query: 67  ESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKIMAVERDGQVFWRPDDIVQPVEA 124
           ESSGLYL+C+THGAVY P+TG+C GGPC G  LR+I  +E+D QVFW+PD+ V+P  A
Sbjct: 66  ESSGLYLICSTHGAVYTPETGRCEGGPCRGRSLRRIEVMEKDNQVFWQPDEYVKPARA 123


>ref|YP_001898490.1| Rieske (2Fe-2S) domain-containing protein [Ralstonia pickettii 12J]
 gb|ACD26058.1| Rieske (2Fe-2S) domain protein [Ralstonia pickettii 12J]
          Length = 130

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/121 (63%), Positives = 95/121 (78%), Gaps = 1/121 (0%)

Query: 5   EEIFICPSAALQEGGLGKRFPVQVHGDETTGFVVRYGGVVYGYLNRCAHVPIELDWAEGE 64
           E + +C SAAL++GGLG RF V V G   + FVVRY G V+GYLN+CAHVP+E+DW EG+
Sbjct: 3   EPVRVCESAALEDGGLGVRFQVDVRGRLVSAFVVRYAGGVHGYLNQCAHVPMEMDWQEGQ 62

Query: 65  FFESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKIMAVERDGQVFWRPDDIVQ-PVE 123
           FFESSGLYLMCATHGA+Y PDTG+C GGPC G+HL K+   ERDG V+W+PD + + PV 
Sbjct: 63  FFESSGLYLMCATHGAIYEPDTGRCVGGPCRGSHLSKLEVAERDGAVWWQPDTLFRAPVS 122

Query: 124 A 124
           A
Sbjct: 123 A 123


>ref|YP_002980945.1| Rieske (2Fe-2S) domain-containing protein [Ralstonia pickettii 12D]
 gb|ACS62273.1| Rieske (2Fe-2S) domain protein [Ralstonia pickettii 12D]
          Length = 130

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/121 (62%), Positives = 94/121 (77%), Gaps = 1/121 (0%)

Query: 5   EEIFICPSAALQEGGLGKRFPVQVHGDETTGFVVRYGGVVYGYLNRCAHVPIELDWAEGE 64
           E + +C SAAL++GGLG RF V V G   + FVVRY G  +GYLN+CAHVP+E+DW EG+
Sbjct: 3   EPVRVCESAALEDGGLGVRFQVDVRGRLVSAFVVRYAGEAHGYLNQCAHVPMEMDWQEGQ 62

Query: 65  FFESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKIMAVERDGQVFWRPDDIVQ-PVE 123
           FFESSGLYLMCATHGA+Y PDTG+C GGPC G+HL K+   ERDG V+W+PD + + PV 
Sbjct: 63  FFESSGLYLMCATHGAIYEPDTGRCVGGPCRGSHLSKLEVAERDGAVWWQPDTLFRAPVS 122

Query: 124 A 124
           A
Sbjct: 123 A 123