BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2302.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775303.1| ribosomal large subunit pseudouridine syntha... 593 e-167 ref|YP_004753541.1| ribosomal large subunit pseudouridine syntha... 543 e-152 ref|YP_001353037.1| ribosomal large subunit pseudouridine syntha... 530 e-148 ref|YP_001100351.1| 23S rRNA pseudouridylate synthase [Herminiim... 507 e-141 ref|ZP_04576496.1| ribosomal large subunit pseudouridine synthas... 437 e-120 >ref|YP_003775303.1| ribosomal large subunit pseudouridine synthase C [Herbaspirillum seropedicae SmR1] gb|ADJ63395.1| ribosomal large subunit pseudouridine synthase C protein [Herbaspirillum seropedicae SmR1] Length = 355 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 305/355 (85%), Positives = 331/355 (93%), Gaps = 1/355 (0%) Query: 22 MKDLARFSRGASESAAAAPASRSEAASQNLPQVQLLTISDEEAGQRIDNFLLRICKGVPK 81 MKDLARFSRGASESA AAPASR+ ASQ++PQVQLLTISDEEAGQRIDNFLLR+CKGVPK Sbjct: 1 MKDLARFSRGASESAKAAPASRNATASQSVPQVQLLTISDEEAGQRIDNFLLRVCKGVPK 60 Query: 82 SHIYRVLRSGEVRVNKGRIDQTYRLQDGDILRVPPIRIAEKASAAVAPGAEFKILLEDNH 141 SHIYRVLRSGEVRVNKGRIDQTYRL +GD++RVPPIR+AEK V PGAEF+ILLED+H Sbjct: 61 SHIYRVLRSGEVRVNKGRIDQTYRLAEGDVVRVPPIRVAEKQETVV-PGAEFRILLEDSH 119 Query: 142 LLIIDKPAGVAVHGGSGVSYGVIEQLRASRPDAKFLELVHRLDRDTSGVLLLAKKRSALT 201 LL+IDKPAGVAVHGGSGVSYGVIEQLRA+RP AKFLELVHRLDRDTSGVLL+AKKRSALT Sbjct: 120 LLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQAKFLELVHRLDRDTSGVLLIAKKRSALT 179 Query: 202 NRHEQIRDGLTDKRYLTLVQGDWKNARQHVKLPLHKYSTAEGERRVRVQEDGQASHTVFS 261 N H+Q+R+G TDKRY TLVQGDWKNARQHVKLPL KYST +GERRVRVQ DGQ SHTVFS Sbjct: 180 NLHDQMREGTTDKRYFTLVQGDWKNARQHVKLPLFKYSTPDGERRVRVQADGQPSHTVFS 239 Query: 262 LIRRYGEFALLEAELKTGRTHQIRVHLSSSGFPIVGDDKYGDFTLNKSLQKADGNRVAFK 321 L+RR+G+FALLEAELKTGRTHQIRVHLSSSGFPIVGDDKYGDF LNK+LQKADG R+AFK Sbjct: 240 LLRRFGDFALLEAELKTGRTHQIRVHLSSSGFPIVGDDKYGDFALNKALQKADGRRIAFK 299 Query: 322 RMFLHAWRISFRHPESGETVTLKAGLPEECARFLRSLEGGAEGDLLPHNMLAGTE 376 RMFLHAWRISFRHPESG+TVTLKAGLP+ECA FLRSLEGG EG+LLP+ MLA E Sbjct: 300 RMFLHAWRISFRHPESGDTVTLKAGLPQECASFLRSLEGGEEGELLPYGMLACAE 354 >ref|YP_004753541.1| ribosomal large subunit pseudouridine synthase C [Collimonas fungivorans Ter331] gb|AEK62718.1| Ribosomal large subunit pseudouridine synthase C [Collimonas fungivorans Ter331] Length = 379 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 273/362 (75%), Positives = 311/362 (85%), Gaps = 22/362 (6%) Query: 16 NDYIFKMKDLARFSRGASESAAAAPASRSEAASQNLPQ-------------------VQL 56 N+YIFKMKDLARFS G ++ P R++AA ++ + VQ+ Sbjct: 3 NNYIFKMKDLARFSGGRVKTR---PEPRTQAAGKHKAEPKVAVEQGIQLTAIAPPLAVQM 59 Query: 57 LTISDEEAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLQDGDILRVPP 116 LTI++++AGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRL +GD++RVPP Sbjct: 60 LTIAEDDAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVIRVPP 119 Query: 117 IRIAEKASAAVAPGAEFKILLEDNHLLIIDKPAGVAVHGGSGVSYGVIEQLRASRPDAKF 176 IRIAEK + AVAPGAEFKILLEDNHLL+IDKPAGVAVHGGSGVSYGVIEQLRA+RP AKF Sbjct: 120 IRIAEKQTQAVAPGAEFKILLEDNHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQAKF 179 Query: 177 LELVHRLDRDTSGVLLLAKKRSALTNRHEQIRDGLTDKRYLTLVQGDWKNARQHVKLPLH 236 LELVHRLDRDTSG+LLLAKKRSALTN HEQ+RDG TDKRYL LV GDW+N RQHVKLPLH Sbjct: 180 LELVHRLDRDTSGILLLAKKRSALTNLHEQMRDGDTDKRYLVLVHGDWQNERQHVKLPLH 239 Query: 237 KYSTAEGERRVRVQEDGQASHTVFSLIRRYGEFALLEAELKTGRTHQIRVHLSSSGFPIV 296 KY+ A+GERRVRVQ DGQASHT+F+LIRRYG++ALLEAELKTGRTHQIRVHLS+SGF I Sbjct: 240 KYTAADGERRVRVQADGQASHTIFNLIRRYGDYALLEAELKTGRTHQIRVHLSASGFAIA 299 Query: 297 GDDKYGDFTLNKSLQKADGNRVAFKRMFLHAWRISFRHPESGETVTLKAGLPEECARFLR 356 GDDKYGDF+LN++LQKADG RVA KRMFLHA++I+F HPE+G+ VTLKA LP EC RFL+ Sbjct: 300 GDDKYGDFSLNRALQKADGQRVALKRMFLHAYQITFAHPETGKPVTLKAPLPPECERFLK 359 Query: 357 SL 358 SL Sbjct: 360 SL 361 >ref|YP_001353037.1| ribosomal large subunit pseudouridine synthase C [Janthinobacterium sp. Marseille] gb|ABR89694.1| ribosomal large subunit pseudouridine synthase C [Janthinobacterium sp. Marseille] Length = 339 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 270/341 (79%), Positives = 296/341 (86%), Gaps = 3/341 (0%) Query: 22 MKDLARFSRGASESAAAAPASRSEAASQNLPQVQLLTISDEEAGQRIDNFLLRICKGVPK 81 MKDLA FS E+ +P+ S+ SQ QVQL+TI+DE+AGQRIDNFLLRICKGVPK Sbjct: 1 MKDLAIFS--GKEAQTLSPSRSSQVHSQVPAQVQLVTINDEDAGQRIDNFLLRICKGVPK 58 Query: 82 SHIYRVLRSGEVRVNKGRIDQTYRLQDGDILRVPPIRIAEKASAAVAPGAEFKILLEDNH 141 SHIYRVLRSGEVRVNKGRIDQTYRL +GDI+R+PPIRIAEKA + APGAEFKILLEDNH Sbjct: 59 SHIYRVLRSGEVRVNKGRIDQTYRLVEGDIVRIPPIRIAEKAPST-APGAEFKILLEDNH 117 Query: 142 LLIIDKPAGVAVHGGSGVSYGVIEQLRASRPDAKFLELVHRLDRDTSGVLLLAKKRSALT 201 LL+IDKPAGVAVHGGSGVSYGVIEQLRA+RPDAKFLELVHRLDRDTSGVL+LAKKRSALT Sbjct: 118 LLVIDKPAGVAVHGGSGVSYGVIEQLRAARPDAKFLELVHRLDRDTSGVLVLAKKRSALT 177 Query: 202 NRHEQIRDGLTDKRYLTLVQGDWKNARQHVKLPLHKYSTAEGERRVRVQEDGQASHTVFS 261 N HEQIR G DKRYL LV GDWKNARQH+KLPLHKY+T EGERRVRVQ DG SHTVF+ Sbjct: 178 NLHEQIRGGEPDKRYLVLVHGDWKNARQHIKLPLHKYTTPEGERRVRVQADGMESHTVFN 237 Query: 262 LIRRYGEFALLEAELKTGRTHQIRVHLSSSGFPIVGDDKYGDFTLNKSLQKADGNRVAFK 321 LI+RYG F+LLEAELKTGRTHQIRVHL+SSGF I GDDKYGDF LN+ LQKADG RVA K Sbjct: 238 LIQRYGPFSLLEAELKTGRTHQIRVHLASSGFAIAGDDKYGDFALNRDLQKADGERVALK 297 Query: 322 RMFLHAWRISFRHPESGETVTLKAGLPEECARFLRSLEGGA 362 RMFLHA +I+F HPESG+ VTL A LP EC RFL+SL+ A Sbjct: 298 RMFLHAHQITFIHPESGKPVTLNAPLPPECERFLKSLKKTA 338 >ref|YP_001100351.1| 23S rRNA pseudouridylate synthase [Herminiimonas arsenicoxydans] emb|CAL62228.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) [Herminiimonas arsenicoxydans] Length = 326 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 253/302 (83%), Positives = 275/302 (91%), Gaps = 1/302 (0%) Query: 58 TISDEEAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLQDGDILRVPPI 117 TIS+EEAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRL +GD++R+PPI Sbjct: 22 TISEEEAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLTEGDVVRIPPI 81 Query: 118 RIAEKASAAVAPGAEFKILLEDNHLLIIDKPAGVAVHGGSGVSYGVIEQLRASRPDAKFL 177 RIAEKA + APGAEFKILLEDNHLL+IDKPAGVAVHGGSGVSYGVIEQLRA+RPDAKFL Sbjct: 82 RIAEKAPST-APGAEFKILLEDNHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPDAKFL 140 Query: 178 ELVHRLDRDTSGVLLLAKKRSALTNRHEQIRDGLTDKRYLTLVQGDWKNARQHVKLPLHK 237 ELVHRLDRDTSGVL+LAKKRSALTN HEQIR G DKRYL LV GDWKNARQH+KL LHK Sbjct: 141 ELVHRLDRDTSGVLVLAKKRSALTNLHEQIRGGEPDKRYLVLVHGDWKNARQHIKLALHK 200 Query: 238 YSTAEGERRVRVQEDGQASHTVFSLIRRYGEFALLEAELKTGRTHQIRVHLSSSGFPIVG 297 YSTA+GERRVRVQ DG SHT+F+LI+RYGEFALLEAELKTGRTHQIRVHL+SSGF I G Sbjct: 201 YSTADGERRVRVQADGMESHTIFNLIQRYGEFALLEAELKTGRTHQIRVHLASSGFAIAG 260 Query: 298 DDKYGDFTLNKSLQKADGNRVAFKRMFLHAWRISFRHPESGETVTLKAGLPEECARFLRS 357 DDKYGDF LN+ LQKA+G RVA KRMFLHA +I+F HPESG+ VTL A LP EC RFL+S Sbjct: 261 DDKYGDFALNRELQKANGERVALKRMFLHAHQITFIHPESGKPVTLNAPLPPECERFLKS 320 Query: 358 LE 359 L+ Sbjct: 321 LK 322 >ref|ZP_04576496.1| ribosomal large subunit pseudouridine synthase C [Oxalobacter formigenes HOxBLS] gb|EEO27458.1| ribosomal large subunit pseudouridine synthase C [Oxalobacter formigenes HOxBLS] Length = 340 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 211/319 (66%), Positives = 259/319 (81%), Gaps = 1/319 (0%) Query: 48 SQNLPQVQLLTISDEEAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLQ 107 + + QV+L+T ++ E GQRIDN+L R KGVPKSH+YR+LRSGE+RVNK R+DQTYR++ Sbjct: 22 NSQMRQVRLITATENEDGQRIDNYLFRTFKGVPKSHVYRILRSGEIRVNKKRVDQTYRIR 81 Query: 108 DGDILRVPPIRIAEKASAAVAPGAEFKILLEDNHLLIIDKPAGVAVHGGSGVSYGVIEQL 167 GDI+R+PP++ AE+ + P A F IL ED+ +L+I+KPAGVAVHGGSGVSYGVIEQL Sbjct: 82 TGDIIRIPPVKTAEQKEKHIPP-AGFDILYEDDSVLVINKPAGVAVHGGSGVSYGVIEQL 140 Query: 168 RASRPDAKFLELVHRLDRDTSGVLLLAKKRSALTNRHEQIRDGLTDKRYLTLVQGDWKNA 227 RA RP AKFLELVHRLD++TSG+L+LAKKRSALT HEQIRDG DKRY LV GDWKN Sbjct: 141 RAMRPGAKFLELVHRLDKETSGILVLAKKRSALTRLHEQIRDGSVDKRYQALVHGDWKNP 200 Query: 228 RQHVKLPLHKYSTAEGERRVRVQEDGQASHTVFSLIRRYGEFALLEAELKTGRTHQIRVH 287 RQHV+LPL KY TAEGERRVRV E GQASHT+F++++ Y +F LLEAELKTGRTHQIRVH Sbjct: 201 RQHVRLPLLKYHTAEGERRVRVDESGQASHTIFNVLKHYPDFTLLEAELKTGRTHQIRVH 260 Query: 288 LSSSGFPIVGDDKYGDFTLNKSLQKADGNRVAFKRMFLHAWRISFRHPESGETVTLKAGL 347 L+SSGF I GDDKYGDF LN+ LQK A KRMFLHA++I+F HPE+G+ +T+ A L Sbjct: 261 LASSGFVIAGDDKYGDFELNRQLQKGKKGEDALKRMFLHAYKITFIHPETGKPLTISAPL 320 Query: 348 PEECARFLRSLEGGAEGDL 366 P+EC +L++LE G D+ Sbjct: 321 PDECIGYLKTLESGNSKDM 339