BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2301.p (1073 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775302.1| ribonuclease E protein [Herbaspirillum serop... 1239 0.0 ref|YP_004753543.1| ribonuclease E [Collimonas fungivorans Ter33... 959 0.0 ref|YP_001353036.1| ribonuclease E (RNAse E) protein [Janthinoba... 915 0.0 ref|YP_368464.1| ribonuclease E [Burkholderia sp. 383] >gi|77966... 823 0.0 ref|YP_001118876.1| ribonuclease E [Burkholderia vietnamiensis G... 771 0.0 >ref|YP_003775302.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1] gb|ADJ63394.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1] Length = 1062 Score = 1239 bits (3205), Expect = 0.0, Method: Composition-based stats. Identities = 912/1085 (84%), Positives = 944/1085 (87%), Gaps = 35/1085 (3%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 Query: 61 GEERHGFLPFKEVARTYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 GEERHGFLPFKEVAR+YFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS Sbjct: 61 GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ Sbjct: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 Query: 181 WDLNYLMQLWRAIEGAGQTGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 WDLNYLMQLWRAIEGAGQ+ SGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ Sbjct: 181 WDLNYLMQLWRAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV Sbjct: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR Sbjct: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ Sbjct: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH Sbjct: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 Query: 481 YKMERIKHDDPRLDEGQASYTMAEQADTDIGYSKRQKEEERPRQEAVVKGITPDQPAPIV 540 YKMERIKHDDPRLD+ QASYTMAEQADTDIGYSKRQKE+ RPRQEAVVKGITPDQPAPIV Sbjct: 481 YKMERIKHDDPRLDDAQASYTMAEQADTDIGYSKRQKEDVRPRQEAVVKGITPDQPAPIV 540 Query: 541 ERKAPEPVAAPVPPPTLAPESGLLGKIFAFFRKKPVAPVEVPAPVEAKAPAKREGDRNGR 600 ERKAPEPVAAPVPPPTLAPESGLLGKIF+FFRKKPVAPV PAPVEAKAPAKREG+RNGR Sbjct: 541 ERKAPEPVAAPVPPPTLAPESGLLGKIFSFFRKKPVAPVAAPAPVEAKAPAKREGERNGR 600 Query: 601 GGDRNGRNRNRGERGERGERAERGERNAEQRAPRGPAAVELKTGDAAEAKQARAPRGPRE 660 GGDRNGRNRNR ERG+R ER ER ERN EQR R PAA ELK GDAAE KQ RAPR PRE Sbjct: 601 GGDRNGRNRNRNERGDRAERGERAERNGEQRNGRNPAAAELKAGDAAEGKQVRAPRPPRE 660 Query: 661 PKEGREPREGREVREGREPREAREGQEPKEARRNEPREAREPREPREGREPREGREGREP 720 PKEGREPRE RE++ +AR+GQE KE RRNEPREAREPRE REGREPREGRE Sbjct: 661 PKEGREPREPRELQA-----QARDGQEVKETRRNEPREAREPREGREGREPREGRE---- 711 Query: 721 RQPREPRAPRGERKDPKAEEGLPLEAALAAGAATAGVAVAAGAVALSNDEQAAQVEAAQV 780 PR PRAPRGERK+ K+EEGLPLEAALAAG A VA +A +DE A QVEAAQV Sbjct: 712 --PRAPRAPRGERKEAKSEEGLPLEAALAAGTAGVAVAAGTAVIA--SDEAATQVEAAQV 767 Query: 781 EGSEGADGVEGAEAAEGGTEPRRRRRRGGRNRHRRERDENGNVIDNGEGEGSEQSEAAEG 840 E E EGAE AEG TEPRRRRRRGGRNRHRRERDENGN+IDN E ++AEG Sbjct: 768 EAGEAG---EGAETAEGATEPRRRRRRGGRNRHRRERDENGNLIDNAEA-----GDSAEG 819 Query: 841 VDTVVVASAAAASVNVETVAADTSAAPVEVAQAAVAQASFAASPVPEQAP-AEAAVHVES 899 D A A A++ AD +AA + A A + A+ + P E AP AE+A VES Sbjct: 820 -DAAETAEGAEAAIPAFVPVADAAAASAQAAVAQASFAA-SPVPAAEDAPVAESAAKVES 877 Query: 900 GVNSVEAVAAAAAEATQAVFSNQPAIEPAAPSIDASFAPTPAFEPVQAPVAAPAASEAPV 959 GVNSVEAVAAAAAEAT+AVFS+QPAIEP APSIDASFAP P VQAP APAASEAPV Sbjct: 878 GVNSVEAVAAAAAEATEAVFSHQPAIEPVAPSIDASFAPAPVEAAVQAPAQAPAASEAPV 937 Query: 960 EVVHAAPAAPAVP------QQISLLDAVE-----ASPAPVAEAAPAPAAAPAPAVAASTG 1008 EVV A P QQISLLDAVE AS A APA APA A + G Sbjct: 938 EVVPVVAAEPVAAPAPVVQQQISLLDAVEAAPVVASAPAAPAAPAAPAPQAAPAPAQAAG 997 Query: 1009 NAARSESLEQMLSQAGLTLATTDPVKLRAAQEAAAAFVPAPHVPRERKPLPPQSTEPLVQ 1068 N A+ +SL+QMLSQAGLTLATTDPVKLRAAQEAAAAFVPAP VPRERKPLPPQSTEPLVQ Sbjct: 998 NGAQWDSLQQMLSQAGLTLATTDPVKLRAAQEAAAAFVPAPRVPRERKPLPPQSTEPLVQ 1057 Query: 1069 VETRR 1073 VETRR Sbjct: 1058 VETRR 1062 >ref|YP_004753543.1| ribonuclease E [Collimonas fungivorans Ter331] gb|AEK62720.1| Ribonuclease E [Collimonas fungivorans Ter331] Length = 1040 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 685/1092 (62%), Positives = 752/1092 (68%), Gaps = 73/1092 (6%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 Query: 61 GEERHGFLPFKEVARTYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 GEERHGFLPFKEVARTYFKEG+DVR+ASIK+ALREGQEI+VQVEKEERGNKGAALTSF+S Sbjct: 61 GEERHGFLPFKEVARTYFKEGVDVRSASIKDALREGQEIMVQVEKEERGNKGAALTSFVS 120 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMD+LDLP+GMSVIARTAGIGRNVDELQ Sbjct: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDQLDLPSGMSVIARTAGIGRNVDELQ 180 Query: 181 WDLNYLMQLWRAIEGAGQTGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 WDLNYLMQLWRAIEGAG G GAFLIYQESSLVIRAIRDYFQPDIGEILIDTD+IHDQAQ Sbjct: 181 WDLNYLMQLWRAIEGAGTQGKGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIHDQAQ 240 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV Sbjct: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 DVNSARATRG DIETTAFNTN EAA+EVARQLRLRDLGGLIVIDFIDMENSKNQREVE R Sbjct: 301 DVNSARATRGGDIETTAFNTNCEAAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETR 360 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 LKDAL +DRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ Sbjct: 361 LKDALRYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRV +I+IPNKHLETPH Sbjct: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVGIILIPNKHLETPH 480 Query: 481 YKMERIKHDDPRLDEGQASYTMAEQADTDIGYSKRQKEEERPRQEAVVKGITPDQPAPIV 540 YK+ER+KHDDPRL+E QASY MAEQADTDIGYSK QKEE +PRQEAVVKGITPDQPAPIV Sbjct: 481 YKLERLKHDDPRLEETQASYAMAEQADTDIGYSKTQKEEGKPRQEAVVKGITPDQPAPIV 540 Query: 541 ERKAPE--PVAAPVPPPTLAPESGLLGKIFAFFRKKPVAPVEVPAPVEAKAPAKREGDRN 598 ERK E P A P E+G LGKIF FF KP AP PA ++ GDR Sbjct: 541 ERKPVEARPTAVAAASPA---ETGFLGKIFGFFFSKPAAPAATPAATAEAKGPQQRGDR- 596 Query: 599 GRGGDRNGRNRNRGERGERGERAERGERNAEQRAPRGPAAVELKTGDAAEAKQARAPRGP 658 GDRN R + R R E + AVE KT +QAR PR P Sbjct: 597 ---GDRNNRGQRGRNRSGRNRDGSAQETRDDNAKKPLVEAVEAKT------QQARPPRPP 647 Query: 659 REPKEGREPREGREVREGREPREAREGQEPKEARRNEPREAREPREPREGREPREGREGR 718 REPKE RE +E RE + K RN EGR Sbjct: 648 REPKEQRE-----------STKEQREPSDSKAETRN---------------------EGR 675 Query: 719 EPRQPREPRAPRGERKDPKAEEGLPLEAALAAGAATAGVAVAAGAVALSNDEQAAQVEAA 778 R R PR PR ERK+ +E + E L G A + ++ +A Q ++ Sbjct: 676 RERAERPPRPPREERKENLSEIKVD-ETLLKGGVVAAAGVAVSSIAEAADATEAVQADSG 734 Query: 779 QVEGSEGAD--------------GVEGAEAAEGGTEPRRRRRRGGRNRHRRERDENGNVI 824 +VE G D + AEG TE G + + GN Sbjct: 735 RVEAKAGEDEEPRRRRRRGGRNRNRRDRDGAEGTTEGSSDDIETGEAAAAADVADTGNDA 794 Query: 825 DNGEGEGS---EQSEAAEGVDTVVVASAAAASVNVETVAADTSAAPVEVAQAAVAQASFA 881 D E + ++ + G ++ASA + A +T+AAP ++ A A Sbjct: 795 DAPEAVSAPAPAEASSPAGNSVPMMASAVPMAQESAAPAVETTAAPTALSNAIAAPLVPQ 854 Query: 882 ASPVPEQAPAEAAVHVESGVNSVEAVAAAAAEATQAVFSNQPAIEPAAPSIDASFAPTPA 941 E+A A + E V AA A +++P PAA + AP A Sbjct: 855 HIAPQEEAAPVVAEAAPAAAPVQEPVVAAPVVAEPKPAASEPVAVPAAIVPEQPAAPQAA 914 Query: 942 FEPVQAPVAAPAASEAPVEVVHAAPAAPAVPQQISLLDAVEASPAPVAEAAPAPAAAPAP 1001 P+A P E P + AAP V + E + A AA Sbjct: 915 PAVASQPLAEPQIEETPALLAPAAPVVAPVVAPVIAPVVAETAAPVAEAPAVIKAAV--- 971 Query: 1002 AVAASTGNAARSESLEQMLSQAGLTLATTDPVKLRAAQEAAAAFVPAPHVPRERKPLPPQ 1061 + + + E L+ +L+ AGLTLA TDP KLRAAQEA A V APHVPRERKPLP Q Sbjct: 972 -----SSGSPKVEDLQSVLAAAGLTLAATDPSKLRAAQEATANIVAAPHVPRERKPLPAQ 1026 Query: 1062 STEPLVQVETRR 1073 S+EPLVQ+ET+R Sbjct: 1027 SSEPLVQIETQR 1038 >ref|YP_001353036.1| ribonuclease E (RNAse E) protein [Janthinobacterium sp. Marseille] gb|ABR88437.1| ribonuclease E (RNAse E) protein [Janthinobacterium sp. Marseille] Length = 974 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 534/613 (87%), Positives = 561/613 (91%), Gaps = 9/613 (1%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRMLFNATQQEELRVAIV+GQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFV+Y Sbjct: 1 MKRMLFNATQQEELRVAIVNGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSY 60 Query: 61 GEERHGFLPFKEVARTYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 GE+RHGFLPFKEVARTYFKEG+DVRNASIK+ALREGQEI+VQVEKEERGNKGAALTSFIS Sbjct: 61 GEDRHGFLPFKEVARTYFKEGVDVRNASIKDALREGQEIMVQVEKEERGNKGAALTSFIS 120 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLP GMSVIARTAGIGRNVDELQ Sbjct: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPQGMSVIARTAGIGRNVDELQ 180 Query: 181 WDLNYLMQLWRAIEGAGQTGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 WDLNYLMQLWRAIEGAGQ+G GAFLIYQESSLVIRAIRDYFQPDIGEILIDTD+I++QAQ Sbjct: 181 WDLNYLMQLWRAIEGAGQSGGGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAQ 240 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 QFM+HVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV Sbjct: 241 QFMSHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 DVNSARATRGSDIETTAF+TN EAA+EVARQLRLRDLGGLIVIDFIDMEN+KNQREVE R Sbjct: 301 DVNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMENAKNQREVETR 360 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 LKDALH+DRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ Sbjct: 361 LKDALHYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 VLRIIQEEAMKENSA+IHVQAPVDVAAFLLNEKRGEILKIETRHRV+VI+IPNKHLETPH Sbjct: 421 VLRIIQEEAMKENSASIHVQAPVDVAAFLLNEKRGEILKIETRHRVSVILIPNKHLETPH 480 Query: 481 YKMERIKHDDPRLDEGQASYTMAEQADTDIGYSKRQKEEERPRQEAVVKGITPDQPAPIV 540 YK+ERIKHDDPRL+E QASY M E+ADTDI Y KRQKEE +PRQEA+VKGITPDQPAPIV Sbjct: 481 YKLERIKHDDPRLEETQASYAMTEEADTDISYGKRQKEEGKPRQEAMVKGITPDQPAPIV 540 Query: 541 ERKAPEPVAAPVPPPTLAPESGLLGKIFAFF--RKKPVAPVEVPAPVEAKAPAKRE-GDR 597 ERK PV A P A G K+FAF + E K RE G+R Sbjct: 541 ERK---PVEAAKAAPVEA--KGFFQKLFAFLGGGAEQPKAAAAQPAAEDKQQRSRERGER 595 Query: 598 NGRGGDRNGRNRN 610 N GG RN RNR+ Sbjct: 596 NANGG-RNQRNRS 607 >ref|YP_368464.1| ribonuclease E [Burkholderia sp. 383] gb|ABB07820.1| RNAse E [Burkholderia sp. 383] Length = 1053 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 532/736 (72%), Positives = 601/736 (81%), Gaps = 35/736 (4%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRMLFNATQQEELRVAIVDGQKLIDIDIET GREQRK NIYKGVITRIEPSLEACFVNY Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY 60 Query: 61 GEERHGFLPFKEVARTYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 GE+RHGFLPFKEVAR YFKEGID+R+A I++ALREGQE+IVQVEKEERGNKGAALT+FIS Sbjct: 61 GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS 120 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPRGGGVSRR+EG++RQELRETM +L +P+GMS+IARTAGIGR+ +ELQ Sbjct: 121 LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ 180 Query: 181 WDLNYLMQLWRAIEGAGQTGSGA--FLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQ 238 WDLNYL+QLWRAIE A Q+G+ LIY ESSLVIRAIRDYFQPDIGEILIDT++IHDQ Sbjct: 181 WDLNYLLQLWRAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQ 240 Query: 239 AQQFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV 298 A+ FM VMPD V +VKRY DDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV Sbjct: 241 ARAFMDIVMPDNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV 300 Query: 299 SVDVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVE 358 ++DVNSARAT+G+DIE TA TNLEAADEVARQLRLRDLGGLIVIDFIDME++K+QREVE Sbjct: 301 AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE 360 Query: 359 GRLKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSA 418 RLKDAL HDRARVQMGKISRFGLMELSRQRLRP+LSEGSHVTCPRCNGTGHIRDTESSA Sbjct: 361 QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA 420 Query: 419 LQVLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLET 478 LQVLRIIQEEAMKEN+AAIH Q PV+V AFLLNEKR EI KIE+R +V +++IPNKHL+T Sbjct: 421 LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT 480 Query: 479 PHYKMERIKHDDPRLDEGQASYTMAEQA----DTDIGYSKRQKEEERPRQEAVVKGITPD 534 PHYK+ER++HDD RLD+ +AS+ MAE+A +++ GYSKR E +P+QEA VKGITP+ Sbjct: 481 PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAA-EVKPKQEAAVKGITPE 539 Query: 535 QPAPIVERKAP-EPVAAPVPPPTLAPES-GLLGKIFAFFRKKPVAPVEVPAPVEAKAPAK 592 +PAP + P EPVAAP P +AP S G +G + F P AP AK A Sbjct: 540 RPAPSPAPQRPVEPVAAPTP---VAPASGGFIGWLKGLFGVSPAPAPAPVAPAPAKEQAA 596 Query: 593 REGDRNGRGGDRNGRNRNRGERGERGERAERGERNAEQRAPRGPAAVELKTG-DAAEAKQ 651 R RGER E+ E +RGER ++ R A + + G D A A + Sbjct: 597 RPA---------------RGERTEKSE--QRGERGGDRNRNRRGGAQQAQGGRDQAVAGR 639 Query: 652 ARAPRGPREPKEGREPREGREVREGREPREAREGQEPKEARRNEPREAREPREPREGREP 711 + R RE KE REPRE RE REGREPRE+RE +EP+E RE RE R PREGREP Sbjct: 640 GQPQRQEREGKEVREPREAREPREGREPRESREPREPREN-----REGREGRGPREGREP 694 Query: 712 REGREGREPRQPREPR 727 REGRE REPR+ REPR Sbjct: 695 REGREPREPRENREPR 710 >ref|YP_001118876.1| ribonuclease E [Burkholderia vietnamiensis G4] gb|ABO54041.1| RNAse E [Burkholderia vietnamiensis G4] Length = 1074 Score = 771 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 501/751 (66%), Positives = 566/751 (75%), Gaps = 59/751 (7%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRMLFNATQQEELRVAIVDGQKLIDIDIET GREQRK NIYKGV+TRIEPSLEACFVNY Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY 60 Query: 61 GEERHGFLPFKEVARTYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 GE+RHGFLPFKEVAR YFKEGID+R+A I++ALREGQE+IVQVEKEERGNKGAALT+FIS Sbjct: 61 GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS 120 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPRGGGVSRR+EG++RQELRETM +L +P+GMS+IARTAGIGR+ +ELQ Sbjct: 121 LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ 180 Query: 181 WDLNYLMQLWRAIEGAGQTGSGA--FLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQ 238 WDLNYL+QLWRAIE A Q+G+ LIY ESSLVIRAIRDYFQPDIGEILIDT +I+DQ Sbjct: 181 WDLNYLLQLWRAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ 240 Query: 239 AQQFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV 298 A+ FM VMPD V +VKRY DDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV Sbjct: 241 ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV 300 Query: 299 SVDVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVE 358 ++DVNSARAT+G+DIE TA TNLEAADEVARQLRLRDLGGLIVIDFIDME++K+QREVE Sbjct: 301 AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE 360 Query: 359 GRLKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSA 418 RLKDAL HDRARVQMGKISRFGLMELSRQRLRP+LSEGSHVTCPRCNGTGHIRDTESSA Sbjct: 361 QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA 420 Query: 419 LQVLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLET 478 LQVLRIIQEEAMKEN+AAIH Q PV+V AFLLNEKR EI KIE+R +V +++IPNKHL+T Sbjct: 421 LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT 480 Query: 479 PHYKMERIKHDDPRLDEGQASYTMAEQA----DTDIGYSKRQKEEERPRQEAVVKGIT-- 532 PHYK+ER++HDD RLD+ +AS+ MAE+A +++ GYSKR + +P+QEA VKGIT Sbjct: 481 PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTA-DVKPKQEAAVKGITPE 539 Query: 533 --PDQPAPIVERKAPEPVAAPVPPPTLAPESGLLGKIFAFF--RKKPVAPVEVPAPVEAK 588 PA + AP P P G +G + F AP Sbjct: 540 RPAPSPAAPRPAEPVAVAPAPAPAPVAPASGGFIGWLKGLFGMAPAAAPAPAPVAPAPVS 599 Query: 589 APAKREGDRNGRGGDRNGRNRNRGERGERGERAERGERNAEQRAPRGPAAVELKTGDAAE 648 PA R ER E+ E+ + P+ D A Sbjct: 600 EPAARPAR----------------ERTEKSEQRGGDRNRNRRGGPQAQGG-----RDQAA 638 Query: 649 AKQARAPRGPREPKEGREPREGREVREGREPREAREGQEPKEARR--------------- 693 A + ++PR RE KE REPRE RE RE RE RE REG+EP+E R Sbjct: 639 AGRGQSPRLEREGKEAREPREPREGREPREAREPREGREPRENREGREGREGREGRGPRE 698 Query: 694 ----------NEPREAREPREPREGREPREG 714 EPREAREPREPRE E E Sbjct: 699 GREPREPREIREPREAREPREPRERAEQLEA 729