BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2297.p (495 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775298.1| hypothetical protein Hsero_1881 [Herbaspiril... 645 0.0 ref|YP_004753551.1| DNA recombination protein [Collimonas fungiv... 604 e-171 ref|YP_001353034.1| hypothetical protein mma_1344 [Janthinobacte... 593 e-167 ref|YP_001100355.1| putative signal peptide [Herminiimonas arsen... 591 e-166 ref|ZP_04576547.1| conserved hypothetical protein [Oxalobacter f... 556 e-156 >ref|YP_003775298.1| hypothetical protein Hsero_1881 [Herbaspirillum seropedicae SmR1] gb|ADJ63390.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 455 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 406/454 (89%), Positives = 428/454 (94%) Query: 42 LLQVKQDLQRHQQETGERIERELRSQVQASAQSTRQELGANFAHLQQTLATQLTSVAGLQ 101 L ++Q LQRHQQ+ GERIERELRSQVQASAQSTRQELGA+FA LQQTLATQ+ SVA LQ Sbjct: 2 LAHMQQVLQRHQQDIGERIERELRSQVQASAQSTRQELGASFAQLQQTLATQMASVASLQ 61 Query: 102 NQQIDGFAQQLVKLNESNTQQLESMRQSITLQAQVNREEQAVSLKRFGDTLNQQLSALTE 161 NQQIDGFAQQLVKLNE+N QQL+SMRQSITLQAQV+REEQAVSLKRFGDTLNQQLSALTE Sbjct: 62 NQQIDGFAQQLVKLNETNAQQLDSMRQSITLQAQVSREEQAVSLKRFGDTLNQQLSALTE 121 Query: 162 SNAQRMAEVRATLEAKIKDLQNDNAQKLEEMRKTVDEKLHATLEQRLGESFKLVSDRLDK 221 SNAQRM EVRATLEAKIKDLQ DNAQKL+EMRKTVDEKLHATLEQRLGESFKLVSDRLDK Sbjct: 122 SNAQRMGEVRATLEAKIKDLQTDNAQKLDEMRKTVDEKLHATLEQRLGESFKLVSDRLDK 181 Query: 222 VHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPDQYAKNVETVPASG 281 VHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTP+QY KNVETV SG Sbjct: 182 VHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPEQYGKNVETVRGSG 241 Query: 282 ERVEFAIRLPGAKEDAGQVWMPIDAKFPKEQYERLVDAAERADAEGVATAGRELERAVRG 341 ERVEFAIRLPGAKE+ VWMPIDAKFPKEQYERLV+AAERADA+GVA AG+ELERAVR Sbjct: 242 ERVEFAIRLPGAKEEGEPVWMPIDAKFPKEQYERLVEAAERADADGVAAAGKELERAVRT 301 Query: 342 EAKTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDELQRTCRVTIAGPSTLSALL 401 EA+TIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSD+LQR+CRVTIAGPSTLSALL Sbjct: 302 EARTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDDLQRSCRVTIAGPSTLSALL 361 Query: 402 NSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLAATKTALERAAKNIDQAETRTRQ 461 NSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLA+TKTALERAA+NIDQAETRTRQ Sbjct: 362 NSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLASTKTALERAARNIDQAETRTRQ 421 Query: 462 MTRKLKSVEALPVENAQKLLGTGELDLGEDAEGV 495 MTRKLKSVEALP + AQKLLG E +LGE E + Sbjct: 422 MTRKLKSVEALPADAAQKLLGAAEPELGESDEAL 455 >ref|YP_004753551.1| DNA recombination protein [Collimonas fungivorans Ter331] gb|AEK62728.1| DNA recombination protein [Collimonas fungivorans Ter331] Length = 488 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 380/488 (77%), Positives = 419/488 (85%), Gaps = 7/488 (1%) Query: 6 MILAGLVVAGLVLQVLILLRGSQRQEDDTALVIEDALLQVKQDLQRHQQETGERIERELR 65 +IL + +VLQ++ +LR S+ + L Q++ DLQRHQQ+ GER +RELR Sbjct: 7 LILLAVAAVLIVLQIIAILRSSRGADP------AQQLTQLQNDLQRHQQDIGERQQRELR 60 Query: 66 SQVQASAQSTRQELGANFAHLQQTLATQLTSVAGLQNQQIDGFAQQLVKLNESNTQQLES 125 S+VQ SAQ RQELG++F LQQTLA Q+TSVA LQN QID FAQQLVKLNE+N QQL+S Sbjct: 61 SEVQTSAQGMRQELGSSFGQLQQTLAAQMTSVATLQNNQIDTFAQQLVKLNETNAQQLDS 120 Query: 126 MRQSITLQAQVNREEQAVSLKRFGDTLNQQLSALTESNAQRMAEVRATLEAKIKDLQNDN 185 MR ++ QAQ NREEQA SL+RFGDTLNQ L+ALTESNAQRMAEVRATLEAKIKDLQNDN Sbjct: 121 MRLAMNQQAQTNREEQAQSLQRFGDTLNQTLAALTESNAQRMAEVRATLEAKIKDLQNDN 180 Query: 186 AQKLEEMRKTVDEKLHATLEQRLGESFKLVSDRLDKVHQGLGEMQQLATGVGDLKRVLTN 245 +LEEMRKTVDEKLHATLEQRLGESFK+VSDRL+KVHQGLGEMQQLA GVGDLKRVLTN Sbjct: 181 GLRLEEMRKTVDEKLHATLEQRLGESFKIVSDRLEKVHQGLGEMQQLAIGVGDLKRVLTN 240 Query: 246 VKTRGTWGEVQLEILLEQMLTPDQYAKNVETVPASGERVEFAIRLPGAKEDAGQVWMPID 305 VKTRGTWGEVQLE+LLEQ+LTP+QYAKNVETVP SGERVEFAI+LPG + VWMPID Sbjct: 241 VKTRGTWGEVQLEMLLEQVLTPEQYAKNVETVPGSGERVEFAIKLPGNDDGGTPVWMPID 300 Query: 306 AKFPKEQYERLVDAAERADAEGVATAGRELERAVRGEAKTIAEKYLSPPLTTDFAILFLP 365 AKFPKEQYERL +AA+RADAEGVA A RELERAVRGEAKTIAEKYLSPPLTTDFAILFLP Sbjct: 301 AKFPKEQYERLAEAADRADAEGVAVASRELERAVRGEAKTIAEKYLSPPLTTDFAILFLP 360 Query: 366 TEGLYAEVMRRPGLSDELQRTCRVTIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLG 425 TEGLYAEVMRR GL+DELQR R++IAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLG Sbjct: 361 TEGLYAEVMRRSGLADELQRVHRISIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLG 420 Query: 426 AVKTEFGKFGEVLAATKTALERAAKNIDQAETRTRQMTRKLKSVEALPVENAQKLLGTGE 485 AVKTEFGKFG+VLAATK LERAAKNIDQAE R+RQM RKLKSVEALP + AQ LLG E Sbjct: 421 AVKTEFGKFGDVLAATKLTLERAAKNIDQAEVRSRQMARKLKSVEALPSDAAQLLLGK-E 479 Query: 486 LDLGEDAE 493 +L D E Sbjct: 480 PELAPDDE 487 >ref|YP_001353034.1| hypothetical protein mma_1344 [Janthinobacterium sp. Marseille] gb|ABR89532.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 493 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 376/477 (78%), Positives = 415/477 (87%), Gaps = 3/477 (0%) Query: 6 MILAGLVVAGLVLQVLILLRGSQRQEDDTALVIEDALLQVKQDLQRHQQETGERIERELR 65 +ILA L V + LQV++LLR + D A I L Q++ ++Q HQQ+ ERIERELR Sbjct: 7 IILAVLAVVVIALQVVLLLRA---RGTDLASQITPQLKQLQNEVQAHQQQGSERIERELR 63 Query: 66 SQVQASAQSTRQELGANFAHLQQTLATQLTSVAGLQNQQIDGFAQQLVKLNESNTQQLES 125 QVQ++AQSTRQELG+NF QQ L+TQ+TSVA LQN QID FAQQL KLNE+N QQLE+ Sbjct: 64 EQVQSTAQSTRQELGSNFTQFQQALSTQMTSVATLQNNQIDSFAQQLAKLNEANAQQLEA 123 Query: 126 MRQSITLQAQVNREEQAVSLKRFGDTLNQQLSALTESNAQRMAEVRATLEAKIKDLQNDN 185 MR +I QAQ REEQA +LK FGDTLNQ L+ LTESNAQRMAEVRATLEAKIKDLQ DN Sbjct: 124 MRLAIGAQAQAGREEQATALKHFGDTLNQTLTTLTESNAQRMAEVRATLEAKIKDLQTDN 183 Query: 186 AQKLEEMRKTVDEKLHATLEQRLGESFKLVSDRLDKVHQGLGEMQQLATGVGDLKRVLTN 245 +LEEMRKTVDEKLHATLEQRLGESFKLVSDRL+KVHQGLGEMQQLA GVGDLKRVLTN Sbjct: 184 GTRLEEMRKTVDEKLHATLEQRLGESFKLVSDRLEKVHQGLGEMQQLAIGVGDLKRVLTN 243 Query: 246 VKTRGTWGEVQLEILLEQMLTPDQYAKNVETVPASGERVEFAIRLPGAKEDAGQVWMPID 305 VKTRGTWGEVQLE+LLEQ+LTPDQYAKNVETVP +GERVEFAI+LPG + +WMPID Sbjct: 244 VKTRGTWGEVQLEMLLEQVLTPDQYAKNVETVPGTGERVEFAIKLPGTDDGQTPIWMPID 303 Query: 306 AKFPKEQYERLVDAAERADAEGVATAGRELERAVRGEAKTIAEKYLSPPLTTDFAILFLP 365 AKFPKEQYERL +AA+RADA+GV+ AGRELER VR EAK IAEKYLSPPLTTDFAILFLP Sbjct: 304 AKFPKEQYERLAEAADRADADGVSLAGRELERVVRFEAKKIAEKYLSPPLTTDFAILFLP 363 Query: 366 TEGLYAEVMRRPGLSDELQRTCRVTIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLG 425 TEGLYAEVMRRPGL+D+LQRT RV+IAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLG Sbjct: 364 TEGLYAEVMRRPGLADDLQRTHRVSIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLG 423 Query: 426 AVKTEFGKFGEVLAATKTALERAAKNIDQAETRTRQMTRKLKSVEALPVENAQKLLG 482 AVKTEFGKFG+VLAATK LERAAKNI+QAETR+RQMTRKLKSVEALP E AQ+LLG Sbjct: 424 AVKTEFGKFGDVLAATKATLERAAKNIEQAETRSRQMTRKLKSVEALPSETAQQLLG 480 >ref|YP_001100355.1| putative signal peptide [Herminiimonas arsenicoxydans] emb|CAL62232.1| Putative RmuC family protein [Herminiimonas arsenicoxydans] Length = 489 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 374/477 (78%), Positives = 415/477 (87%), Gaps = 9/477 (1%) Query: 6 MILAGLVVAGLVLQVLILLRGSQRQEDDTALVIEDALLQVKQDLQRHQQETGERIERELR 65 ++LA +VV + LQ++ +LR + A+ I L ++ +LQRHQQ+ ER+ERELR Sbjct: 9 LLLAAVVV--IALQIVAMLR-------NRAVDIMPQLATLQNELQRHQQQGSERMERELR 59 Query: 66 SQVQASAQSTRQELGANFAHLQQTLATQLTSVAGLQNQQIDGFAQQLVKLNESNTQQLES 125 QVQ++AQ+TRQELG+NF QQ LATQLTSVA LQN QID FAQQL KLNE N QLE+ Sbjct: 60 EQVQSTAQATRQELGSNFTQFQQALATQLTSVATLQNNQIDSFAQQLAKLNEVNGLQLEA 119 Query: 126 MRQSITLQAQVNREEQAVSLKRFGDTLNQQLSALTESNAQRMAEVRATLEAKIKDLQNDN 185 MRQ+ITLQAQ REEQA +LKRFGDTLNQ L+ LTESNAQRMAEVRATLEAKIKDLQ DN Sbjct: 120 MRQAITLQAQTGREEQASALKRFGDTLNQTLTTLTESNAQRMAEVRATLEAKIKDLQTDN 179 Query: 186 AQKLEEMRKTVDEKLHATLEQRLGESFKLVSDRLDKVHQGLGEMQQLATGVGDLKRVLTN 245 +LEEMRKTVDEKLHATLEQRLGESFKLVSDRL+KVHQGLGEMQQLA GVGDLKRVLTN Sbjct: 180 GARLEEMRKTVDEKLHATLEQRLGESFKLVSDRLEKVHQGLGEMQQLAIGVGDLKRVLTN 239 Query: 246 VKTRGTWGEVQLEILLEQMLTPDQYAKNVETVPASGERVEFAIRLPGAKEDAGQVWMPID 305 VKTRGTWGEVQLE+LLEQ+LTPDQYAKNVET+P SG RVEFAI+LPG + +WMPID Sbjct: 240 VKTRGTWGEVQLEMLLEQVLTPDQYAKNVETIPGSGARVEFAIKLPGNDDGHTPIWMPID 299 Query: 306 AKFPKEQYERLVDAAERADAEGVATAGRELERAVRGEAKTIAEKYLSPPLTTDFAILFLP 365 AKFPKEQYERL +AA+RADA+GV AG+ELE VRGEAK IAEKYLSPPLTTDFAILFLP Sbjct: 300 AKFPKEQYERLAEAADRADADGVLLAGKELEAVVRGEAKKIAEKYLSPPLTTDFAILFLP 359 Query: 366 TEGLYAEVMRRPGLSDELQRTCRVTIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLG 425 TEGLYAEVMRRPGL+D+LQRT RV+IAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLG Sbjct: 360 TEGLYAEVMRRPGLADDLQRTHRVSIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLG 419 Query: 426 AVKTEFGKFGEVLAATKTALERAAKNIDQAETRTRQMTRKLKSVEALPVENAQKLLG 482 AVKTEFGKFG+VLAATK LERAAKNI+QAETR+RQMTRKLKSVEALP E AQ+LLG Sbjct: 420 AVKTEFGKFGDVLAATKATLERAAKNIEQAETRSRQMTRKLKSVEALPSEAAQQLLG 476 >ref|ZP_04576547.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gb|EEO27509.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 503 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 329/476 (69%), Positives = 391/476 (82%), Gaps = 6/476 (1%) Query: 7 ILAGLVVAGLVLQVLILLRGSQRQEDDTALVIEDALLQVKQDLQRHQQETGERIERELRS 66 +L L A L+L ++ L R +++ +L +Q L++ Q GER ER+LR Sbjct: 8 LLIFLATACLILLLIQLFRQARQPASSVSLD------GWRQQLEQAMQAVGERTERQLRE 61 Query: 67 QVQASAQSTRQELGANFAHLQQTLATQLTSVAGLQNQQIDGFAQQLVKLNESNTQQLESM 126 QV SAQ TRQEL A+ A QQ + Q+T+V+ LQN QI F++QL +L N +QLE M Sbjct: 62 QVLMSAQGTRQELTASLAQFQQGVTQQMTNVSTLQNGQIRAFSEQLARLTAGNAEQLEKM 121 Query: 127 RQSITLQAQVNREEQAVSLKRFGDTLNQQLSALTESNAQRMAEVRATLEAKIKDLQNDNA 186 R++I QA R+EQ+ ++KRFGDTL+Q L++LTESNA+RM EVRA LE KI++LQ DNA Sbjct: 122 RENIAAQALFTRQEQSDAMKRFGDTLHQTLTSLTESNAKRMTEVRAVLEEKIRELQTDNA 181 Query: 187 QKLEEMRKTVDEKLHATLEQRLGESFKLVSDRLDKVHQGLGEMQQLATGVGDLKRVLTNV 246 KLEEMRKTVDEKLHATLEQRLGESF+LVS+RL+KVHQGLGEM QLA GVGDLKRVLTNV Sbjct: 182 AKLEEMRKTVDEKLHATLEQRLGESFRLVSERLEKVHQGLGEMHQLAMGVGDLKRVLTNV 241 Query: 247 KTRGTWGEVQLEILLEQMLTPDQYAKNVETVPASGERVEFAIRLPGAKEDAGQVWMPIDA 306 KTRGTWGEVQLE+LLEQ++TP+QYAKNVETVP SG VEFAIRLPG +++ VW+P+DA Sbjct: 242 KTRGTWGEVQLEMLLEQLMTPNQYAKNVETVPGSGAFVEFAIRLPGKHDESAPVWLPVDA 301 Query: 307 KFPKEQYERLVDAAERADAEGVATAGRELERAVRGEAKTIAEKYLSPPLTTDFAILFLPT 366 KFPKEQYERL++A+E ADA+GVA AGRELERA+R +AKTIA+KYLSPP TTDFA+LFLPT Sbjct: 302 KFPKEQYERLMEASEAADADGVAQAGRELERAIRLQAKTIADKYLSPPHTTDFALLFLPT 361 Query: 367 EGLYAEVMRRPGLSDELQRTCRVTIAGPSTLSALLNSLQMGFRTLALEKRSSEVWQVLGA 426 EGLYAEVMRRPGLSDELQRTCR++IAGPSTLSALLNSLQMGFRTLALEKRSSEVW++LGA Sbjct: 362 EGLYAEVMRRPGLSDELQRTCRISIAGPSTLSALLNSLQMGFRTLALEKRSSEVWEILGA 421 Query: 427 VKTEFGKFGEVLAATKTALERAAKNIDQAETRTRQMTRKLKSVEALPVENAQKLLG 482 VKTEF KFG VL ATK LERAAKNID A+ RTRQM+RKLK+VEALP A++LLG Sbjct: 422 VKTEFAKFGSVLDATKKVLERAAKNIDDAQIRTRQMSRKLKTVEALPENRAEELLG 477