BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2294.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_04762704.1| conserved hypothetical protein [Acidovorax de...    76   2e-12
ref|YP_411776.1| hypothetical protein Nmul_A1081 [Nitrosospira m...    74   6e-12
ref|YP_002553999.1| hypothetical protein Dtpsy_2564 [Acidovorax ...    72   2e-11
ref|YP_987410.1| hypothetical protein Ajs_3211 [Acidovorax sp. J...    72   3e-11
ref|YP_995781.1| hypothetical protein Veis_0986 [Verminephrobact...    67   7e-10

>ref|ZP_04762704.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gb|EER60511.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 127

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 6/101 (5%)

Query: 1   MGLSWLSAIKLIPWGDVVQATPGIVKGARDLWSRTRK------AKTAVDAQQVKPVGSDV 54
           M   W++A+KL+PWGDV++A P I++ AR L   TRK      A T VD   + PV   +
Sbjct: 2   MAAGWVAALKLVPWGDVLEAAPQILQAARKLIGATRKGAEEAAAGTLVDGAALPPVAQQL 61

Query: 55  DQLGQRLAQLEAEQLEASQLINTLAEQNAQLVATMDAMRRR 95
           + L QR+A+LE EQLE++ LI +LAEQNA++V  +DA+R R
Sbjct: 62  EHLHQRVARLEQEQLESAALIQSLAEQNARVVQAVDALRAR 102


>ref|YP_411776.1| hypothetical protein Nmul_A1081 [Nitrosospira multiformis ATCC
           25196]
 gb|ABB74384.1| hypothetical protein Nmul_A1081 [Nitrosospira multiformis ATCC
           25196]
          Length = 123

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 5/117 (4%)

Query: 5   WLSAIKLIPWGDVVQATPGIVKGARDLWSRTRKAKTAVDAQ-QVKPVGSDVDQ----LGQ 59
           W++A+K+IPWG+VV++ P IVK A+ L+S T+K      A  Q   +   +D+    L  
Sbjct: 4   WMTALKIIPWGNVVESAPHIVKAAKHLFSATKKETADFSADWQTGDISGSLDKRVRFLEA 63

Query: 60  RLAQLEAEQLEASQLINTLAEQNAQLVATMDAMRRRLRMLGAFSVLLAVGVVAVWLR 116
           +L +L  EQ  +++LI +LAEQNA +V  ++  R R++ML    +LL  G  AV  R
Sbjct: 64  KLIELSDEQRSSAELIKSLAEQNALMVEAIEVFRVRVKMLLTVCILLLGGFAAVIFR 120


>ref|YP_002553999.1| hypothetical protein Dtpsy_2564 [Acidovorax ebreus TPSY]
 gb|ACM33999.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
          Length = 121

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 1  MGLSWLSAIKLIPWGDVVQATPGIVKGARDLWSRTRKAKTA-VDAQQVKPVGSDVDQLGQ 59
          M + W+SA+KL+PWGDV++ATP I++ AR L S TRKA      AQ++      +  L  
Sbjct: 1  MAVGWMSALKLVPWGDVIEATPQIMQAARKLISNTRKAPPPEAPAQRIDSTPDQLAVLQA 60

Query: 60 RLAQLEAEQLEASQLINTLAEQNAQLVATMDA 91
          R+AQLE +Q  ++ LI +LAEQNAQLV  +D 
Sbjct: 61 RMAQLEEDQRASAALIESLAEQNAQLVRAVDG 92


>ref|YP_987410.1| hypothetical protein Ajs_3211 [Acidovorax sp. JS42]
 gb|ABM43334.1| conserved hypothetical protein [Acidovorax sp. JS42]
          Length = 121

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 1  MGLSWLSAIKLIPWGDVVQATPGIVKGARDLWSRTRKAKTA-VDAQQVKPVGSDVDQLGQ 59
          M + W+SA+KL+PWGDV++ATP I++ AR L S TRKA      AQ++      +  L  
Sbjct: 1  MAVGWMSALKLVPWGDVIEATPQIMQAARKLISNTRKAPPPEAPAQRIDSTPDQLAVLQA 60

Query: 60 RLAQLEAEQLEASQLINTLAEQNAQLVATMDA 91
          R+AQLE +Q  ++ LI +LAEQNAQLV  +D 
Sbjct: 61 RMAQLEEDQRASAALIKSLAEQNAQLVRAVDG 92


>ref|YP_995781.1| hypothetical protein Veis_0986 [Verminephrobacter eiseniae
          EF01-2]
 gb|ABM56763.1| conserved hypothetical protein [Verminephrobacter eiseniae
          EF01-2]
          Length = 119

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 3/92 (3%)

Query: 5  WLSAIKLIPWGDVVQATPGIVKGARDLWSRTRKAKTAVDAQQ--VKPVGSDVDQLGQRLA 62
          W++ +KL+PWGDV++ATP I++ A+ L    RK  TAV AQ+  V P  +    L  R+ 
Sbjct: 2  WMAVLKLVPWGDVIKATPQILQAAKKLLGSARK-DTAVAAQEGAVPPADAQWQHLHDRVT 60

Query: 63 QLEAEQLEASQLINTLAEQNAQLVATMDAMRR 94
          QLE EQ + + LI +LA QNAQLV  ++A+RR
Sbjct: 61 QLEQEQRDGALLIESLAAQNAQLVLAIEALRR 92