BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2293.p         (149 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775295.1| hypothetical protein Hsero_1878 [Herbaspiril...   139   1e-31
emb|CBY27584.1| putative periplasmic protein [Yersinia enterocol...    99   2e-19
ref|YP_004298622.1| hypothetical protein YE105_C2423 [Yersinia e...    95   3e-18
ref|YP_001006025.1| hypothetical protein YE1744 [Yersinia entero...    95   4e-18
ref|ZP_04641563.1| hypothetical protein ymoll0001_17410 [Yersini...    92   3e-17

>ref|YP_003775295.1| hypothetical protein Hsero_1878 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63387.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 94/112 (83%), Positives = 104/112 (92%)

Query: 38  SAFAADCTKAATQAEMNACASQTLTQNDADLNATYMAYRDKLNKAKQNQLREVQLAWLKY 97
           +A AADCTKAATQAEMNACASQTLTQ+DADLNATYMAYRDKL++A+QN+LREVQLAWLKY
Sbjct: 21  AAQAADCTKAATQAEMNACASQTLTQSDADLNATYMAYRDKLDRARQNELREVQLAWLKY 80

Query: 98  RDLSCRFESSASAGGSAASLALQTCLADKTRQRADELKNLAGCQEGDLNCVR 149
           RDLSCRFES+ASAGGS A+   QTCLA+KTRQR DELK LAGCQEGD+ CVR
Sbjct: 81  RDLSCRFESAASAGGSVAATVRQTCLAEKTRQRTDELKALAGCQEGDVACVR 132


>emb|CBY27584.1| putative periplasmic protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 emb|CBX71411.1| hypothetical protein YEW_BD05780 [Yersinia enterocolitica W22703]
          Length = 140

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/127 (41%), Positives = 72/127 (56%)

Query: 21  MKAPLSLLAAALLLCAGSAFAADCTKAATQAEMNACASQTLTQNDADLNATYMAYRDKLN 80
           M+    +LA  L+L    A A DC  A TQ +MN CA+    + DA+LN TY     K  
Sbjct: 12  MRKKKIILATLLILPLSQALAVDCKNAVTQQDMNQCANSDYKKADAELNRTYKDLLAKTT 71

Query: 81  KAKQNQLREVQLAWLKYRDLSCRFESSASAGGSAASLALQTCLADKTRQRADELKNLAGC 140
            A++  L+  QL W+KYRD  C F+SSA+ GGS   + +  CL  KT +R  +LK+   C
Sbjct: 72  VAQRPLLKSAQLIWIKYRDADCTFQSSATEGGSVHPMIISACLTHKTEERTTQLKSFLNC 131

Query: 141 QEGDLNC 147
            EGDL+C
Sbjct: 132 SEGDLSC 138


>ref|YP_004298622.1| hypothetical protein YE105_C2423 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gb|ADZ42919.1| hypothetical protein YE105_C2423 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 129

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/127 (41%), Positives = 72/127 (56%)

Query: 21  MKAPLSLLAAALLLCAGSAFAADCTKAATQAEMNACASQTLTQNDADLNATYMAYRDKLN 80
           M+    +LA  L+L    A A DC  A TQ +MN CA+    + DA+LN TY     K  
Sbjct: 1   MRKKKIILATLLILPLSQALAVDCKNAVTQQDMNQCANSDYKKADAELNRTYKDLLAKTT 60

Query: 81  KAKQNQLREVQLAWLKYRDLSCRFESSASAGGSAASLALQTCLADKTRQRADELKNLAGC 140
            A++  L+  QL W+KYRD  C F+SSA+ GGS   + +  CL  KT +R  +LK+   C
Sbjct: 61  VAQRPLLKSAQLIWIKYRDADCTFQSSATEGGSVHPMIISACLTHKTEERTTQLKSFLNC 120

Query: 141 QEGDLNC 147
            EGDL+C
Sbjct: 121 SEGDLSC 127


>ref|YP_001006025.1| hypothetical protein YE1744 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 emb|CAL11817.1| putative exported protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 129

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/127 (41%), Positives = 72/127 (56%)

Query: 21  MKAPLSLLAAALLLCAGSAFAADCTKAATQAEMNACASQTLTQNDADLNATYMAYRDKLN 80
           M+    +LA  L+L    A A DC  A TQ +MN CA+    + DA+LN TY     K  
Sbjct: 1   MRKKKIILATLLILPLSQALAVDCKNAVTQQDMNQCANSDYKKADAELNRTYKDLLAKTT 60

Query: 81  KAKQNQLREVQLAWLKYRDLSCRFESSASAGGSAASLALQTCLADKTRQRADELKNLAGC 140
            A++  L+  QL W+KYRD  C F+SSA+ GGS   + +  CL  KT +R  +LK+   C
Sbjct: 61  VAQRPLLKSAQLTWIKYRDADCTFQSSATEGGSVHPMIISACLTHKTEERTTQLKSFLNC 120

Query: 141 QEGDLNC 147
            EGDL+C
Sbjct: 121 SEGDLSC 127


>ref|ZP_04641563.1| hypothetical protein ymoll0001_17410 [Yersinia mollaretii ATCC
           43969]
 gb|EEQ09883.1| hypothetical protein ymoll0001_17410 [Yersinia mollaretii ATCC
           43969]
          Length = 128

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 67/121 (55%)

Query: 27  LLAAALLLCAGSAFAADCTKAATQAEMNACASQTLTQNDADLNATYMAYRDKLNKAKQNQ 86
           +L + L+L      A DC  A TQ EMN CA+      D +LN  Y     K + A++  
Sbjct: 6   MLISLLVLPISQVLALDCHNAVTQMEMNQCANSDYKSADTELNRIYKQVLVKTSVAQRPL 65

Query: 87  LREVQLAWLKYRDLSCRFESSASAGGSAASLALQTCLADKTRQRADELKNLAGCQEGDLN 146
           L+  QL W+KYRD  C F+SSA+ GGS   + +  CL  KT +R  +LK+   C EGDL+
Sbjct: 66  LKSAQLTWIKYRDADCTFQSSATEGGSVHPMIISACLTQKTEERTTQLKSFLNCPEGDLS 125

Query: 147 C 147
           C
Sbjct: 126 C 126