BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2289.p (470 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum s... 647 0.0 ref|YP_004752987.1| tRNA(Ile)-lysidine synthetase [Collimonas fu... 454 e-125 ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium s... 439 e-121 ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas... 431 e-118 ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacterace... 417 e-114 >ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ63382.1| PP-loop superfamily ATPase, implicated in cell cycle control, protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 360/449 (80%), Positives = 387/449 (86%), Gaps = 4/449 (0%) Query: 26 LAATGFEPAQDTLAVAFSGGLDSTVLLEAAAQWQRESGG--RVVALHVHHGLSPNADAWL 83 ++A+GF+ A DTLAVA+SGGLDSTVLL AAQW RE+GG R+ LHVHHGLSP+ADAWL Sbjct: 1 MSASGFDAAHDTLAVAYSGGLDSTVLLWVAAQWARENGGTSRLAPLHVHHGLSPHADAWL 60 Query: 84 AHAEQACAQRGITCAQERVQLERVADSGVEEAARLARYAALGRLCRAHGARLLLTAHHLD 143 AHA+ CAQ G+ ERVQLE VADSGVEEAARLARYAALGRLCR GAR+LLTAHHLD Sbjct: 61 AHAQACCAQLGLVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLD 120 Query: 144 DQAETVLLQLLRGSGLAGMSGMDQCNAAPGLLDDADTLIARPFLAIPRAQLEEGARAWSL 203 DQAETVLLQLLRGSGLAG+SGMD+CN AP LL D L+ARPFL + RAQLE A A SL Sbjct: 121 DQAETVLLQLLRGSGLAGLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSL 180 Query: 204 AWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLA 263 WIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLA Sbjct: 181 KWIEDESNSDPRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLA 240 Query: 264 QCREDDHLRMPALRGLSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRSQLLQADVEAQLCV 323 CRED+HLRMP LR LSEQRFLNLMRHWFGLRGMRMPSAAWMQEMR QLLQADVEAQLCV Sbjct: 241 HCREDEHLRMPPLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCV 300 Query: 324 SHPDGEVHRYRERVFLAPRRSLPDEGASLSLRWSGQAQVHVPVFHGTLHFEPVSDGDARP 383 SHPDGEVHRYRERVFLAPRR PDEGA +LRW GQAQ +P ++GTLHF+ + DARP Sbjct: 301 SHPDGEVHRYRERVFLAPRRMPPDEGAVATLRWDGQAQWRLPAWYGTLHFDRIGGDDARP 360 Query: 384 GFDAAWLRAQSLLVCGRSGGERIKLGVNRPARSLKQQYQSADVPAWERPFLPLVWAGETL 443 GFD AWL+ QSLL CGRSGGERI+L NRPARSLKQQYQSADVPAWERP+LPLVWAGE+L Sbjct: 361 GFDPAWLQGQSLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESL 420 Query: 444 LFAAGIGMDSAHLVTS--GERIALRWQPD 470 LFAAGIGMD S +RIALRWQPD Sbjct: 421 LFAAGIGMDCGQFAPSATAQRIALRWQPD 449 >ref|YP_004752987.1| tRNA(Ile)-lysidine synthetase [Collimonas fungivorans Ter331] gb|AEK62164.1| tRNA(Ile)-lysidine synthetase [Collimonas fungivorans Ter331] Length = 472 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 248/438 (56%), Positives = 306/438 (69%), Gaps = 7/438 (1%) Query: 35 QDTLAVAFSGGLDSTVLLEAAAQWQRESGGRVVALHVHHGLSPNADAWLAHAEQACAQRG 94 Q LAVA+SGGLDS+VLL AAAQ+ G ++ A H+HHG+SPNAD W +H +ACA+ G Sbjct: 32 QARLAVAYSGGLDSSVLLHAAAQYAGAHGAQLFAFHIHHGISPNADQWQSHCAEACARLG 91 Query: 95 ITCAQERVQLERVADSGVEEAARLARYAALGRLCRAHGARLLLTAHHLDDQAETVLLQLL 154 + R+ L SGVEEAAR++RYAALG LCR H LLLT HHLDDQAETVLLQLL Sbjct: 92 VVFDTRRIALRNSDKSGVEEAARISRYAALGDLCRQHQIPLLLTGHHLDDQAETVLLQLL 151 Query: 155 RGSGLAGMSGMDQCNAAPGLLDDADTLIARPFLAIPRAQLEEGARAWSLAWIEDESNSDP 214 RGSG AG+SGMD+ N AP LL DA L+ARP L + RA LE+ A A L +IEDESN DP Sbjct: 152 RGSGAAGLSGMDRWNTAPTLLGDAVLLMARPLLKVSRAALEQYAAAQQLTFIEDESNHDP 211 Query: 215 RYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAQCREDDHLRMP 274 RY RNALR QVMP L Q FPG+Q+R +R+AGH Q Q LL ++A QD+A C + L + Sbjct: 212 RYARNALRQQVMPVLAQHFPGFQERFSRSAGHMQTTQRLLIDLAAQDMAVCADGACLDLE 271 Query: 275 ALRGLSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRSQLLQADVEAQLCVSHPDGEVHRYR 334 +R LS +R NL+R+WFGL +RMPS+AW+ EMR QLL+A +AQLCV+HPD + R+R Sbjct: 272 HVRQLSGERIDNLLRYWFGLHHLRMPSSAWLSEMRQQLLEAKADAQLCVTHPDCHIRRHR 331 Query: 335 ERVFLAPRRSLP-DEGASLSLRWSGQAQVHVPVFHGTLHFEPVSDGDARPGFDAAWLRAQ 393 RVFL PR + E + RW+G+A++ P F G LHF+ A G DA WLRAQ Sbjct: 332 NRVFLTPRDDVDRSEIEPQAFRWNGEAEMRFPQFGGVLHFD-----QAEQGIDADWLRAQ 386 Query: 394 SLLVCGRSGGERIKLGVNRPARSLKQQYQSADVPAWERPFLPLVWAGETLLFAAGIGMDS 453 SL + RSGGER+KL +NRP +S+K YQ+ DVP WER LPLV +G+ +LFAAGIGMD Sbjct: 387 SLQIQYRSGGERLKLALNRPTKSVKYHYQAFDVPPWERERLPLVSSGKQILFAAGIGMDC 446 Query: 454 AHLVTS-GERIALRWQPD 470 L G I+LRWQ D Sbjct: 447 LQLAAGPGLHISLRWQAD 464 >ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] gb|ABR89105.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] Length = 462 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 242/440 (55%), Positives = 300/440 (68%), Gaps = 9/440 (2%) Query: 34 AQDTLAVAFSGGLDSTVLLEAAAQWQRESGGRVVALHVHHGLSPNADAWLAHAEQACAQR 93 A+ +A+A+SGGLDS LL + + A HVHHGLSPNAD WLAH CA Sbjct: 22 AKAKIALAYSGGLDSAALLHLLHAYGLAQQIEIFAFHVHHGLSPNADDWLAHCRAQCAAL 81 Query: 94 GITCAQERVQLERVADSGVEEAARLARYAALGRLCRAHGARLLLTAHHLDDQAETVLLQL 153 G+ +VQ+ R +G+EEAAR +RYAALG +CRAHG LLLTAHHLDDQAETVLLQL Sbjct: 82 GVVFDARQVQVTRQGKNGIEEAARQSRYAALGDMCRAHGVPLLLTAHHLDDQAETVLLQL 141 Query: 154 LRGSGLAGMSGMDQCNAAPGLLDDADTLIARPFLAIPRAQLEEGARAWSLAWIEDESNSD 213 LRGSG+AG+SGMD N A LL DA+ L+ RP L + R L+ A ++ ++EDESN D Sbjct: 142 LRGSGVAGLSGMDSANHAADLLGDANLLMGRPLLQVRREDLQAYVTAHAIQFVEDESNLD 201 Query: 214 PRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAQCREDDHLRM 273 PRY RNALRHQVMP L + FPG+QQR AR A HAQ AQ LL E+A +DL QC + + + + Sbjct: 202 PRYARNALRHQVMPKLEEYFPGFQQRFARTAEHAQSAQRLLIELAAEDLQQCLDGECVDV 261 Query: 274 PALRGLSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRSQLLQADVEAQLCVSHPDGEVHRY 333 LR S R N++R+WFGLRG+RMPS AW+ EMR+QLL+A +AQLCV+H D + R+ Sbjct: 262 TKLRQFSADRIDNMLRYWFGLRGVRMPSTAWLNEMRTQLLEAKHDAQLCVTHADCHIRRH 321 Query: 334 RERVFLAPRRSLPD--EGASLSLRWSGQAQVHVPVFHGTLHFEPVSDGDARPGFDAAWLR 391 R+RV++ P+ PD S W G+A +H P F GTL+F+ A G A WL Sbjct: 322 RDRVYITPKFD-PDLLLQPPRSFNWQGEASLHFPSFGGTLYFD-----QAEQGIAAEWLG 375 Query: 392 AQSLLVCGRSGGERIKLGVNRPARSLKQQYQSADVPAWERPFLPLVWAGETLLFAAGIGM 451 AQ+LL+ RSGGER+K NRP +SLK QYQ+ DVPAWER LPLV+AG+ LLFAAGIGM Sbjct: 376 AQTLLIQLRSGGERLKPAWNRPTKSLKYQYQACDVPAWERERLPLVFAGKQLLFAAGIGM 435 Query: 452 DSAHLVT-SGERIALRWQPD 470 D L T +G I LRWQ D Sbjct: 436 DCHPLNTETGGNIQLRWQFD 455 >ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas arsenicoxydans] emb|CAL61462.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS [Herminiimonas arsenicoxydans] Length = 465 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 241/439 (54%), Positives = 293/439 (66%), Gaps = 7/439 (1%) Query: 34 AQDTLAVAFSGGLDSTVLLEAAAQWQRESGGRVVALHVHHGLSPNADAWLAHAEQACAQR 93 A +A+A+SGGLDS LL + + G + A HVHHGLS NAD WLAH +Q CA Sbjct: 30 AAQKIAIAYSGGLDSAALLYLLRAYATQHGLELFAFHVHHGLSLNADQWLAHCQQQCAGL 89 Query: 94 GITCAQERVQLERVADSGVEEAARLARYAALGRLCRAHGARLLLTAHHLDDQAETVLLQL 153 G+ RVQ+ SGVEEAAR +RYAALG +CRAH LLLTAHH DDQAETVLLQL Sbjct: 90 GVAFDARRVQIANQDKSGVEEAARHSRYAALGEMCRAHDVPLLLTAHHQDDQAETVLLQL 149 Query: 154 LRGSGLAGMSGMDQCNAAPGLLDDADTLIARPFLAIPRAQLEEGARAWSLAWIEDESNSD 213 LRGSG+AG+SGMD N A LL DA L+ RP L + RA LE+ + ++A++EDESN D Sbjct: 150 LRGSGVAGLSGMDSVNHAADLLGDATLLMGRPLLQLARADLEKIVTSNAIAFVEDESNLD 209 Query: 214 PRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAQCREDDHLRM 273 PRY RNALRHQVMP L Q FPG+QQR AR A HAQ AQ LL E+A QDL C + D L + Sbjct: 210 PRYARNALRHQVMPTLAQHFPGFQQRFARTAQHAQSAQRLLIELAAQDLTVCLDGDCLDI 269 Query: 274 PALRGLSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRSQLLQADVEAQLCVSHPDGEVHRY 333 LR S R +++R+WFG RG+RMPS +W+ EMR+QLL+A +AQLCV+H D + R+ Sbjct: 270 TKLRQFSTDRIDSMLRYWFGSRGVRMPSTSWLNEMRTQLLEAKHDAQLCVTHADCHIRRH 329 Query: 334 RERVFLAPRRSLPD-EGASLSLRWSGQAQVHVPVFHGTLHFEPVSDGDARPGFDAAWLRA 392 R+RV+L P+ E A L+ RW G + F GTL FE +A G A WLR Sbjct: 330 RDRVYLTPKLDPASLEQAPLAFRWDGTTAMQFAEFGGTLFFE-----EAEQGVSAEWLRG 384 Query: 393 QSLLVCGRSGGERIKLGVNRPARSLKQQYQSADVPAWERPFLPLVWAGETLLFAAGIGMD 452 Q+L + RSGGER+K NRP +SLK YQ+ DVPAWER LPLV+A + LLFAAGIGMD Sbjct: 385 QALTMQLRSGGERLKPAWNRPTKSLKYHYQAGDVPAWERERLPLVFAEKQLLFAAGIGMD 444 Query: 453 SAHLVT-SGERIALRWQPD 470 T +G I LRWQ D Sbjct: 445 CHSFSTQAGTHIQLRWQFD 463 >ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32180.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 467 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 238/437 (54%), Positives = 296/437 (67%), Gaps = 8/437 (1%) Query: 34 AQDTLAVAFSGGLDSTVLLEAAAQWQRESGGRVVALHVHHGLSPNADAWLAHAEQACAQR 93 A D LA+A+SGGLDS+ LL A + +++G R+ A HVHHGLS +AD WL H CA+ Sbjct: 31 AGDALAIAYSGGLDSSALLYLAHRHAQKNGIRLFAFHVHHGLSADADDWLQHCAGECARL 90 Query: 94 GITCAQERVQLERVADSGVEEAARLARYAALGRLCRAHGARLLLTAHHLDDQAETVLLQL 153 G+T A +RVQL SG+E AAR +RYAALG +CRAHG LLLTAHH DDQAETVLLQL Sbjct: 91 GVTFAAQRVQLADTGVSGIEAAARSSRYAALGAMCRAHGVPLLLTAHHQDDQAETVLLQL 150 Query: 154 LRGSGLAGMSGMDQCNAAPGLLDDADTLIARPFLAIPRAQLEEGARAWSLAWIEDESNSD 213 LRGSG+AG+SGMD N AP LL DA ++ARP L+ R QL + ++D SN D Sbjct: 151 LRGSGVAGLSGMDTANCAPDLLGDAVLVMARPLLSFSRMQLATLVAKEGITHVDDASNLD 210 Query: 214 PRYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAQCREDDHLRM 273 RY RNALRH+VMPAL + FPG+Q RLAR A HAQ AQ LL E+A QDLA C D L + Sbjct: 211 TRYARNALRHEVMPALAKFFPGFQHRLARTASHAQSAQRLLIELATQDLALCAAGDALDI 270 Query: 274 PALRGLSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRSQLLQADVEAQLCVSHPDGEVHRY 333 LR LS R NL+R+WFG RG+RMPS +W+ EMR+QL +A +AQLCV+H D + R+ Sbjct: 271 SRLRLLSPDRADNLLRYWFGSRGVRMPSTSWLHEMRTQLFEAKPDAQLCVTHADCHIRRH 330 Query: 334 RERVFLAPRRSL--PDEGASLSLRWSGQAQVHVPVFHGTLHFEPVSDGDARPGFDAAWLR 391 R+ VF+ P R P+E + RWSG+AQ+ P +G+L FE G A A WL Sbjct: 331 RDHVFITPHRIEFDPEELPVIGFRWSGEAQLDFPDLNGSLMFEAAEQGVA-----ADWLT 385 Query: 392 AQSLLVCGRSGGERIKLGVNRPARSLKQQYQSADVPAWERPFLPLVWAGETLLFAAGIGM 451 Q+L + RSGGER+K NR R+LK YQ+ +VPAWER LP+V G+ LLFAAG+GM Sbjct: 386 GQALAISLRSGGERLKPAPNRSTRALKYHYQAGNVPAWERERLPVVRVGKKLLFAAGVGM 445 Query: 452 DSAHLVTSGE-RIALRW 467 D H ++ E RIALRW Sbjct: 446 DCHHFSSADEPRIALRW 462